Miyakogusa Predicted Gene

Lj0g3v0019949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0019949.1 Non Chatacterized Hit- tr|D8U9J1|D8U9J1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,37.9,1e-18,TAFII55_N,TAFII55 protein, conserved region;
TRANSCRIPTION INITIATION FACTOR TFIID 55 KD
SUBUNIT-REL,NODE_21185_length_1088_cov_106.576286.path1.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55300.1 | Symbols: TAF7 | TBP-associated factor 7 | chr1:206...   191   1e-49
AT1G55300.2 | Symbols: TAF7 | TBP-associated factor 7 | chr1:206...   190   2e-49

>AT1G55300.1 | Symbols: TAF7 | TBP-associated factor 7 |
           chr1:20628170-20629490 REVERSE LENGTH=203
          Length = 203

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 111/124 (89%), Gaps = 1/124 (0%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPP+V+ERI+RLL+E+  S+S++  LDL F+EDGR+GTF I ++ FPASLLD
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDA-STSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLD 59

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LP VVES+KTYDD +L+K+ADIGQMIMVRE GD AP+ +EYRHGLTPPM+DARKRRFRRE
Sbjct: 60  LPAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRRE 119

Query: 121 PDLN 124
           PDLN
Sbjct: 120 PDLN 123


>AT1G55300.2 | Symbols: TAF7 | TBP-associated factor 7 |
           chr1:20628154-20629490 REVERSE LENGTH=239
          Length = 239

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 111/124 (89%), Gaps = 1/124 (0%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPP+V+ERI+RLL+E+  S+S++  LDL F+EDGR+GTF I ++ FPASLLD
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSED-ASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLD 59

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LP VVES+KTYDD +L+K+ADIGQMIMVRE GD AP+ +EYRHGLTPPM+DARKRRFRRE
Sbjct: 60  LPAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRRE 119

Query: 121 PDLN 124
           PDLN
Sbjct: 120 PDLN 123