Miyakogusa Predicted Gene
- Lj0g3v0018799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0018799.1 tr|E0X6S2|E0X6S2_GLYUR
3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Glycyrrhiza
uralensis GN=H,93.52,0,seg,NULL; Substrate-binding domain of HMG-CoA
reductase,Hydroxymethylglutaryl-CoA reductase, class I,CUFF.1079.1
(293 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76490.1 | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglut... 479 e-135
AT2G17370.1 | Symbols: HMG2, HMGR2 | 3-hydroxy-3-methylglutaryl-... 434 e-122
>AT1G76490.1 | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy
methylglutaryl CoA reductase 1 | chr1:28695801-28698206
FORWARD LENGTH=642
Length = 642
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/289 (80%), Positives = 256/289 (88%)
Query: 1 MTRAPVVRFATAKRAAQLKFYLEDPLNFDSLAVVFNRSSRFARLQSIQPAIAGKNLYIRF 60
MTRAPVVRFA+A+RA++LKF+LE+P NFD+LAVVFNRSSRFARLQS++ IAGKN Y+RF
Sbjct: 344 MTRAPVVRFASARRASELKFFLENPENFDTLAVVFNRSSRFARLQSVKCTIAGKNAYVRF 403
Query: 61 RCSTGDAMGMNIVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSXX 120
CSTGDAMGMN+VSKGVQNVL++L DFPDMDVIGISGNFCSDKK AAVNWIEGRGKS
Sbjct: 404 CCSTGDAMGMNMVSKGVQNVLEYLTDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVV 463
Query: 121 XXXXXXXXXXXXXXXXXXXALVELNMLKNLTGSAIAGALGGFNAHASNIVTAVFLATGQD 180
ALVELNMLKNL GSA+AG+LGGFNAHASNIV+AVF+ATGQD
Sbjct: 464 CEAVIRGEIVNKVLKTSVAALVELNMLKNLAGSAVAGSLGGFNAHASNIVSAVFIATGQD 523
Query: 181 PAQNVESSQCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASK 240
PAQNVESSQCITMMEA+NDGKD+HISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGAS
Sbjct: 524 PAQNVESSQCITMMEAINDGKDIHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGAST 583
Query: 241 EAPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDIS 289
E+PG N+R LATIVAG+VLAGELSLMSAIAAGQLV+SHMKYNRSS+DIS
Sbjct: 584 ESPGMNARRLATIVAGAVLAGELSLMSAIAAGQLVRSHMKYNRSSRDIS 632
>AT2G17370.1 | Symbols: HMG2, HMGR2 | 3-hydroxy-3-methylglutaryl-CoA
reductase 2 | chr2:7550007-7551981 FORWARD LENGTH=562
Length = 562
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/288 (73%), Positives = 244/288 (84%), Gaps = 2/288 (0%)
Query: 1 MTRAPVVRFATAKRAAQLKFYLEDPLNFDSLAVVFNRSSRFARLQSIQPAIAGKNLYIRF 60
MTRAPVVRF +A+RAA + FYL+DP NF+ L+++FN+SSRFARLQSI IAG+NLY RF
Sbjct: 269 MTRAPVVRFPSARRAALVMFYLQDPSNFERLSLIFNKSSRFARLQSITCTIAGRNLYPRF 328
Query: 61 RCSTGDAMGMNIVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSXX 120
CSTGDAMGMN+VSKGVQNVLDF++S+FPDMDVIGISGN+CSDKKA+AVNWIEGRGK
Sbjct: 329 ACSTGDAMGMNMVSKGVQNVLDFVKSEFPDMDVIGISGNYCSDKKASAVNWIEGRGKHVV 388
Query: 121 XXXXXXXXXXXXXXXXXXXALVELNMLKNLTGSAIAGALGGFNAHASNIVTAVFLATGQD 180
ALVELN LKNL GSA+AG+LGGFNAH+SNIV+AVF+ATGQD
Sbjct: 389 CEAFIKAEIVEKVLKTSVEALVELNTLKNLVGSAMAGSLGGFNAHSSNIVSAVFIATGQD 448
Query: 181 PAQNVESSQCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASK 240
PAQNVESS C+TM+ + DG DLHISV+MP IEVGTVGGGTQLASQ+ACLNLLGVKG++
Sbjct: 449 PAQNVESSHCMTMI--LPDGDDLHISVSMPCIEVGTVGGGTQLASQAACLNLLGVKGSNN 506
Query: 241 EAPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDI 288
E PG+N++ LA IVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSS+DI
Sbjct: 507 EKPGSNAQQLARIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDI 554