Miyakogusa Predicted Gene

Lj0g3v0018509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0018509.1 Non Chatacterized Hit- tr|K3XFY2|K3XFY2_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000801,36.6,1e-18,seg,NULL,CUFF.1073.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58720.2 | Symbols:  | smr (Small MutS Related) domain-contai...    84   5e-17
AT5G58720.3 | Symbols:  | smr (Small MutS Related) domain-contai...    84   5e-17
AT5G58720.1 | Symbols:  | smr (Small MutS Related) domain-contai...    84   6e-17

>AT5G58720.2 | Symbols:  | smr (Small MutS Related)
           domain-containing protein | chr5:23720334-23722974
           REVERSE LENGTH=471
          Length = 471

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 17/189 (8%)

Query: 30  EEEETKRIVLEALVEAFSLSSIDEAAMAYTVAGGDPGKASEILRRGLTDTAEXXXXXXXX 89
           E E   +  +E+L+EAF   S++EA  AY  AGGD  KA+EI    L+D  E        
Sbjct: 45  EIENVGKNFIESLMEAFCSVSMEEAMAAYKEAGGDLNKAAEI----LSDLVESGDDPSTS 100

Query: 90  XXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPSFGDFXXXXXXXXXXXXXXXXSTVLGKEY 149
                                       L  +   +                S+V+ K+Y
Sbjct: 101 SVASGSSGQETASTSEYGAGSSSSCSEDL--TRDRWFKGSKQSRVIAATGMVSSVIAKDY 158

Query: 150 VRRNATRNK-----------GFRNGFVEKEDAEQFLCSMLGDDCDLNLAVVRDVLCQCGY 198
           ++ N  R +           G      ++E AEQFL SMLGDDC+L++AVVRDVLCQCGY
Sbjct: 159 LKPNPVRKEFPMMERSKELCGNGKKAADREKAEQFLSSMLGDDCELSMAVVRDVLCQCGY 218

Query: 199 DIEKAMDVL 207
           D++ A++VL
Sbjct: 219 DVDMALNVL 227


>AT5G58720.3 | Symbols:  | smr (Small MutS Related)
           domain-containing protein | chr5:23720109-23722974
           REVERSE LENGTH=506
          Length = 506

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 17/189 (8%)

Query: 30  EEEETKRIVLEALVEAFSLSSIDEAAMAYTVAGGDPGKASEILRRGLTDTAEXXXXXXXX 89
           E E   +  +E+L+EAF   S++EA  AY  AGGD  KA+EI    L+D  E        
Sbjct: 45  EIENVGKNFIESLMEAFCSVSMEEAMAAYKEAGGDLNKAAEI----LSDLVESGDDPSTS 100

Query: 90  XXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPSFGDFXXXXXXXXXXXXXXXXSTVLGKEY 149
                                       L  +   +                S+V+ K+Y
Sbjct: 101 SVASGSSGQETASTSEYGAGSSSSCSEDL--TRDRWFKGSKQSRVIAATGMVSSVIAKDY 158

Query: 150 VRRNATRNK-----------GFRNGFVEKEDAEQFLCSMLGDDCDLNLAVVRDVLCQCGY 198
           ++ N  R +           G      ++E AEQFL SMLGDDC+L++AVVRDVLCQCGY
Sbjct: 159 LKPNPVRKEFPMMERSKELCGNGKKAADREKAEQFLSSMLGDDCELSMAVVRDVLCQCGY 218

Query: 199 DIEKAMDVL 207
           D++ A++VL
Sbjct: 219 DVDMALNVL 227


>AT5G58720.1 | Symbols:  | smr (Small MutS Related)
           domain-containing protein | chr5:23719976-23722974
           REVERSE LENGTH=519
          Length = 519

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 17/189 (8%)

Query: 30  EEEETKRIVLEALVEAFSLSSIDEAAMAYTVAGGDPGKASEILRRGLTDTAEXXXXXXXX 89
           E E   +  +E+L+EAF   S++EA  AY  AGGD  KA+EI    L+D  E        
Sbjct: 45  EIENVGKNFIESLMEAFCSVSMEEAMAAYKEAGGDLNKAAEI----LSDLVESGDDPSTS 100

Query: 90  XXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPSFGDFXXXXXXXXXXXXXXXXSTVLGKEY 149
                                       L  +   +                S+V+ K+Y
Sbjct: 101 SVASGSSGQETASTSEYGAGSSSSCSEDL--TRDRWFKGSKQSRVIAATGMVSSVIAKDY 158

Query: 150 VRRNATRNK-----------GFRNGFVEKEDAEQFLCSMLGDDCDLNLAVVRDVLCQCGY 198
           ++ N  R +           G      ++E AEQFL SMLGDDC+L++AVVRDVLCQCGY
Sbjct: 159 LKPNPVRKEFPMMERSKELCGNGKKAADREKAEQFLSSMLGDDCELSMAVVRDVLCQCGY 218

Query: 199 DIEKAMDVL 207
           D++ A++VL
Sbjct: 219 DVDMALNVL 227