Miyakogusa Predicted Gene
- Lj0g3v0018339.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0018339.1 Non Chatacterized Hit- tr|J3LF66|J3LF66_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G3,34.62,0.000000000000007,seg,NULL; DUF1771,Domain of unknown
function DUF1771; Smr,Smr protein/MutS2 C-terminal; SMR,Smr
prot,CUFF.1060.1
(164 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58720.1 | Symbols: | smr (Small MutS Related) domain-contai... 196 8e-51
AT5G58720.3 | Symbols: | smr (Small MutS Related) domain-contai... 195 1e-50
AT5G58720.2 | Symbols: | smr (Small MutS Related) domain-contai... 166 5e-42
AT3G15390.2 | Symbols: SDE5 | silencing defective 5 | chr3:51966... 57 6e-09
AT3G15390.1 | Symbols: SDE5 | silencing defective 5 | chr3:51966... 57 6e-09
AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-contai... 47 4e-06
>AT5G58720.1 | Symbols: | smr (Small MutS Related)
domain-containing protein | chr5:23719976-23722974
REVERSE LENGTH=519
Length = 519
Score = 196 bits (497), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 115/151 (76%), Gaps = 3/151 (1%)
Query: 2 NWRNVAKKLQSLGPGFDVCPNVAES-QKRTYPKGDEYLVCREDAKQHWGSMKSYYQKAAT 60
+WRNVAKK+QSLG D + E T+ K D Y R+ A W KSYYQKAA
Sbjct: 322 SWRNVAKKMQSLG--IDASSSSGEEPHPNTFVKDDSYHELRKGANDQWNVTKSYYQKAAE 379
Query: 61 AFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAM 120
A+++G RA+AAYLSD+G+ +K AQ+AD +AS DIFVARNK IENV+TIDLHGQHVKPAM
Sbjct: 380 AYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVARNKGIENVVTIDLHGQHVKPAM 439
Query: 121 RMLKLHLLFGSYVPSVQTLRVITGCGSHGVG 151
++LKLHLLFGSYVPS+QTLRVITGCG+ G G
Sbjct: 440 KLLKLHLLFGSYVPSIQTLRVITGCGASGFG 470
>AT5G58720.3 | Symbols: | smr (Small MutS Related)
domain-containing protein | chr5:23720109-23722974
REVERSE LENGTH=506
Length = 506
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 115/151 (76%), Gaps = 3/151 (1%)
Query: 2 NWRNVAKKLQSLGPGFDVCPNVAES-QKRTYPKGDEYLVCREDAKQHWGSMKSYYQKAAT 60
+WRNVAKK+QSLG D + E T+ K D Y R+ A W KSYYQKAA
Sbjct: 322 SWRNVAKKMQSLG--IDASSSSGEEPHPNTFVKDDSYHELRKGANDQWNVTKSYYQKAAE 379
Query: 61 AFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAM 120
A+++G RA+AAYLSD+G+ +K AQ+AD +AS DIFVARNK IENV+TIDLHGQHVKPAM
Sbjct: 380 AYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVARNKGIENVVTIDLHGQHVKPAM 439
Query: 121 RMLKLHLLFGSYVPSVQTLRVITGCGSHGVG 151
++LKLHLLFGSYVPS+QTLRVITGCG+ G G
Sbjct: 440 KLLKLHLLFGSYVPSIQTLRVITGCGASGFG 470
>AT5G58720.2 | Symbols: | smr (Small MutS Related)
domain-containing protein | chr5:23720334-23722974
REVERSE LENGTH=471
Length = 471
Score = 166 bits (421), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 100/134 (74%), Gaps = 3/134 (2%)
Query: 2 NWRNVAKKLQSLGPGFDVCPNVAES-QKRTYPKGDEYLVCREDAKQHWGSMKSYYQKAAT 60
+WRNVAKK+QSLG D + E T+ K D Y R+ A W KSYYQKAA
Sbjct: 322 SWRNVAKKMQSLG--IDASSSSGEEPHPNTFVKDDSYHELRKGANDQWNVTKSYYQKAAE 379
Query: 61 AFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAM 120
A+++G RA+AAYLSD+G+ +K AQ+AD +AS DIFVARNK IENV+TIDLHGQHVKPAM
Sbjct: 380 AYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVARNKGIENVVTIDLHGQHVKPAM 439
Query: 121 RMLKLHLLFGSYVP 134
++LKLHLLFGSYVP
Sbjct: 440 KLLKLHLLFGSYVP 453
>AT3G15390.2 | Symbols: SDE5 | silencing defective 5 |
chr3:5196689-5198445 REVERSE LENGTH=299
Length = 299
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 35 DEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHD 94
+E+ R+ ++H MK YY AA AF++G+ A L ++G + A++AD K+
Sbjct: 135 NEFKAHRKAVREHLNQMKEYYGAAAEAFSKGETERAHRLVEKGHFFGQKAREADDKSVAK 194
Query: 95 IFVARNKD-----IENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQTLRVITG 144
+ +D + V+T++++ K A+R+LK L++ S + S + LRV G
Sbjct: 195 MIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYFSGISSFKYLRVQLG 249
>AT3G15390.1 | Symbols: SDE5 | silencing defective 5 |
chr3:5196689-5199531 REVERSE LENGTH=490
Length = 490
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 35 DEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHD 94
+E+ R+ ++H MK YY AA AF++G+ A L ++G + A++AD K+
Sbjct: 326 NEFKAHRKAVREHLNQMKEYYGAAAEAFSKGETERAHRLVEKGHFFGQKAREADDKSVAK 385
Query: 95 IFVARNKD-----IENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQTLRVITG 144
+ +D + V+T++++ K A+R+LK L++ S + S + LRV G
Sbjct: 386 MIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYFSGISSFKYLRVQLG 440
>AT5G23520.1 | Symbols: | smr (Small MutS Related)
domain-containing protein | chr5:7929591-7931296 REVERSE
LENGTH=435
Length = 435
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 31 YPKGDEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTK 90
+ + D YL R+DA + S ++ + A AF R D A A SD+ +E A+K + +
Sbjct: 237 WEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKLNAE 296
Query: 91 ASHDIFVARNKDIENVITIDLHGQHVKPAMRML--KLHLLFGSYV 133
A+ I NKD ++ +DLHG H A++ L +L ++ G +
Sbjct: 297 AAKKIIGITNKD-NDIWKLDLHGLHATEAVQALQERLQMIEGHFT 340