Miyakogusa Predicted Gene

Lj0g3v0017229.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0017229.2 CUFF.963.2
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08240.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   121   2e-28
AT4G08240.2 | Symbols:  | unknown protein; Has 33 Blast hits to ...   121   2e-28

>AT4G08240.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:5194713-5195756 FORWARD LENGTH=136
          Length = 136

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 86/137 (62%), Gaps = 14/137 (10%)

Query: 26  PLLCIGDLLGDVXXXXXXXXXXXXXSLRRETSPPPPASDLSNAPPL---PLPDLTKLFQE 82
           PLL IGDLL D+                 +  P P  S  S +      PL DLT+LFQE
Sbjct: 7   PLLSIGDLLADLGDETGHSP---------QNHPNPEVSSKSYSDDTISGPL-DLTRLFQE 56

Query: 83  NYEHLNSALAGTDHTWPSLTLKLCTALETANQLVQCTNSNVASLLEKVEELQKIVKRGDS 142
           NY+ LN A AG+DH+W SLTL+LCT+LETAN+LV  T +N   L EKVEEL+KIVKRGDS
Sbjct: 57  NYDKLNDAFAGSDHSWTSLTLELCTSLETANKLVHATTTNARLLSEKVEELEKIVKRGDS 116

Query: 143 AIVAAKAVYVTQDNQSG 159
           A+ AA+ V+ T  NQ G
Sbjct: 117 AVAAARTVHATV-NQKG 132


>AT4G08240.2 | Symbols:  | unknown protein; Has 33 Blast hits to 33
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:5194713-5195756 FORWARD LENGTH=136
          Length = 136

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 86/137 (62%), Gaps = 14/137 (10%)

Query: 26  PLLCIGDLLGDVXXXXXXXXXXXXXSLRRETSPPPPASDLSNAPPL---PLPDLTKLFQE 82
           PLL IGDLL D+                 +  P P  S  S +      PL DLT+LFQE
Sbjct: 7   PLLSIGDLLADLGDETGHSP---------QNHPNPEVSSKSYSDDTISGPL-DLTRLFQE 56

Query: 83  NYEHLNSALAGTDHTWPSLTLKLCTALETANQLVQCTNSNVASLLEKVEELQKIVKRGDS 142
           NY+ LN A AG+DH+W SLTL+LCT+LETAN+LV  T +N   L EKVEEL+KIVKRGDS
Sbjct: 57  NYDKLNDAFAGSDHSWTSLTLELCTSLETANKLVHATTTNARLLSEKVEELEKIVKRGDS 116

Query: 143 AIVAAKAVYVTQDNQSG 159
           A+ AA+ V+ T  NQ G
Sbjct: 117 AVAAARTVHATV-NQKG 132