Miyakogusa Predicted Gene

Lj0g3v0013779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0013779.1 Non Chatacterized Hit- tr|I3S6Y1|I3S6Y1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,100,0.000000000000009,no
description,NULL,NODE_41960_length_159_cov_729.698120.path2.1
         (41 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubiq...    60   3e-10
AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiq...    54   2e-08

>AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small
          ubiquitin-like modifier 1 | chr4:13497466-13498458
          FORWARD LENGTH=100
          Length = 100

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 30/34 (88%), Gaps = 1/34 (2%)

Query: 8  TNNEEDKKPTDQGGAHINLKVKGQDGNEVFFRIK 41
           N EEDKKP D GGAHINLKVKGQDGNEVFFRIK
Sbjct: 3  ANQEEDKKPGD-GGAHINLKVKGQDGNEVFFRIK 35


>AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small
          ubiquitin-like modifier 2 | chr5:22383747-22384772
          REVERSE LENGTH=103
          Length = 103

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 29/31 (93%), Gaps = 2/31 (6%)

Query: 11 EEDKKPTDQGGAHINLKVKGQDGNEVFFRIK 41
          EEDKKP DQG AHINLKVKGQDGNEVFFRIK
Sbjct: 6  EEDKKP-DQG-AHINLKVKGQDGNEVFFRIK 34