Miyakogusa Predicted Gene

Lj0g3v0012939.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0012939.3 tr|Q0JHE8|Q0JHE8_ORYSJ Os01g0867800 protein
OS=Oryza sativa subsp. japonica GN=Os01g0867800 PE=2
SV=,57.89,2e-18,RRM_5,NULL; seg,NULL; HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN,NULL; RRM,RNA recognition motif domain,CUFF.702.3
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43190.2 | Symbols: PTB3 | polypyrimidine tract-binding prote...   141   2e-34
AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding prote...   141   2e-34
AT1G43190.3 | Symbols: PTB3 | polypyrimidine tract-binding prote...   131   2e-31
AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-bindi...    50   4e-07

>AT1G43190.2 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=432
          Length = 432

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 75/84 (89%), Gaps = 1/84 (1%)

Query: 15  FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
            S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAVSALQF+ NVQP+IRGRNVYVQ
Sbjct: 17  ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQ 76

Query: 75  FSSHQELTTMDQT-QAREDEAFRL 97
           FSSHQELTT++Q    REDE  R+
Sbjct: 77  FSSHQELTTIEQNIHGREDEPNRI 100


>AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=432
          Length = 432

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 75/84 (89%), Gaps = 1/84 (1%)

Query: 15  FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
            S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAVSALQF+ NVQP+IRGRNVYVQ
Sbjct: 17  ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQ 76

Query: 75  FSSHQELTTMDQT-QAREDEAFRL 97
           FSSHQELTT++Q    REDE  R+
Sbjct: 77  FSSHQELTTIEQNIHGREDEPNRI 100


>AT1G43190.3 | Symbols: PTB3 | polypyrimidine tract-binding
          protein 3 | chr1:16275432-16278185 REVERSE LENGTH=430
          Length = 430

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 73/84 (86%), Gaps = 3/84 (3%)

Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
           S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAVSALQF+ NVQP+I  RNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTI--RNVYVQ 74

Query: 75 FSSHQELTTMDQT-QAREDEAFRL 97
          FSSHQELTT++Q    REDE  R+
Sbjct: 75 FSSHQELTTIEQNIHGREDEPNRI 98


>AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding
           protein 2 | chr5:21568393-21571537 REVERSE LENGTH=429
          Length = 429

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 8/78 (10%)

Query: 16  SQNDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
           ++ +L++L +PFG +  TK  +   +NQA ++ +D+  A+  + +YA+  +P+ +RG+ V
Sbjct: 30  TEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTV 89

Query: 72  YVQFSSHQEL----TTMD 85
           Y+Q+S+ QE+    TT D
Sbjct: 90  YLQYSNRQEIVNNKTTAD 107