Miyakogusa Predicted Gene

Lj0g3v0012939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0012939.1 tr|D8L9M8|D8L9M8_WHEAT RNA recognition domain
containing protein,expressed OS=Triticum aestivum
GN=T,26.06,0.11,RRM_5,NULL; seg,NULL; HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN,NULL; RRM,RNA recognition motif domain,CUFF.702.1
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43190.2 | Symbols: PTB3 | polypyrimidine tract-binding prote...   336   8e-93
AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding prote...   336   8e-93
AT1G43190.3 | Symbols: PTB3 | polypyrimidine tract-binding prote...   326   7e-90
AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract-...   131   3e-31
AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-bindi...   125   3e-29
AT5G53180.2 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-bindi...   102   3e-22
AT3G01150.2 | Symbols: PTB | polypyrimidine tract-binding protei...    86   2e-17

>AT1G43190.2 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=432
          Length = 432

 Score =  336 bits (861), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 161/191 (84%), Positives = 175/191 (91%), Gaps = 1/191 (0%)

Query: 15  FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
            S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAVSALQF+ NVQP+IRGRNVYVQ
Sbjct: 17  ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQ 76

Query: 75  FSSHQELTTMDQT-QAREDEPNRILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKS 133
           FSSHQELTT++Q    REDEPNRILLVT+HHMLYPITVDVLHQVFSP G+VEK+VTFQKS
Sbjct: 77  FSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKS 136

Query: 134 AGFQALIQFQSCQSAITARSTLQGRNIYDGCCQLDIQFSNLDELQVNFNNDRPRDFTNPN 193
           AGFQALIQ+Q  Q A +AR+ LQGRNIYDGCCQLDIQFSNL+ELQVN+NNDR RD+TNPN
Sbjct: 137 AGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPN 196

Query: 194 LPTEQKGRSSQ 204
           LP EQKGRSS 
Sbjct: 197 LPAEQKGRSSH 207


>AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=432
          Length = 432

 Score =  336 bits (861), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 161/191 (84%), Positives = 175/191 (91%), Gaps = 1/191 (0%)

Query: 15  FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
            S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAVSALQF+ NVQP+IRGRNVYVQ
Sbjct: 17  ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQ 76

Query: 75  FSSHQELTTMDQT-QAREDEPNRILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKS 133
           FSSHQELTT++Q    REDEPNRILLVT+HHMLYPITVDVLHQVFSP G+VEK+VTFQKS
Sbjct: 77  FSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKS 136

Query: 134 AGFQALIQFQSCQSAITARSTLQGRNIYDGCCQLDIQFSNLDELQVNFNNDRPRDFTNPN 193
           AGFQALIQ+Q  Q A +AR+ LQGRNIYDGCCQLDIQFSNL+ELQVN+NNDR RD+TNPN
Sbjct: 137 AGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPN 196

Query: 194 LPTEQKGRSSQ 204
           LP EQKGRSS 
Sbjct: 197 LPAEQKGRSSH 207


>AT1G43190.3 | Symbols: PTB3 | polypyrimidine tract-binding protein
           3 | chr1:16275432-16278185 REVERSE LENGTH=430
          Length = 430

 Score =  326 bits (836), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 3/191 (1%)

Query: 15  FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
            S+NDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAVSALQF+ NVQP+IR  NVYVQ
Sbjct: 17  ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIR--NVYVQ 74

Query: 75  FSSHQELTTMDQT-QAREDEPNRILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKS 133
           FSSHQELTT++Q    REDEPNRILLVT+HHMLYPITVDVLHQVFSP G+VEK+VTFQKS
Sbjct: 75  FSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKS 134

Query: 134 AGFQALIQFQSCQSAITARSTLQGRNIYDGCCQLDIQFSNLDELQVNFNNDRPRDFTNPN 193
           AGFQALIQ+Q  Q A +AR+ LQGRNIYDGCCQLDIQFSNL+ELQVN+NNDR RD+TNPN
Sbjct: 135 AGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPN 194

Query: 194 LPTEQKGRSSQ 204
           LP EQKGRSS 
Sbjct: 195 LPAEQKGRSSH 205


>AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine
           tract-binding protein 1 | chr3:51732-54344 FORWARD
           LENGTH=399
          Length = 399

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 15/194 (7%)

Query: 17  QNDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNVY 72
           + +L+ L + FG I  TK  +   +NQA ++  D+  A+S + +YA+  +P+ IRG+ VY
Sbjct: 30  EEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVY 89

Query: 73  VQFSSHQELTTMDQTQAREDEPNRILLVTVHHM-LYPITVDVLHQVFSPNGYVEKIVTFQ 131
           +Q+S+  E+      Q+  D P  +LLVT   +  + +++DV+H VFS  G+V KI TF+
Sbjct: 90  IQYSNRHEIVN---NQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFE 146

Query: 132 KSAGFQALIQFQSCQSAITARSTLQGRNI-------YDGCCQLDIQFSNLDELQVNFNND 184
           K+AGFQAL+QF   ++A  ARS L GR+I       + G C L + +S   +L + F + 
Sbjct: 147 KAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSH 206

Query: 185 RPRDFTNPNLPTEQ 198
           R RD+TNP LP  Q
Sbjct: 207 RSRDYTNPYLPVNQ 220



 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 56/231 (24%)

Query: 19  DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAVSALQFYANVQPSIRGRNV---- 71
           D++ L F  FG + K+      A  QAL+Q  DV +A +A       + ++ GR++    
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRSIPRYL 179

Query: 72  ----------YVQFSSHQELTTMDQTQAREDEPN-------------------------- 95
                      + +S+H +L    Q+    D  N                          
Sbjct: 180 LSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVE 239

Query: 96  ---RILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKSAGFQALIQFQSCQSAITAR 152
               +LL  + +M Y +TVDVLH VFS  G V+KI  F+K+   QALIQ+    +A  A+
Sbjct: 240 SQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAK 299

Query: 153 STLQGRNIYDGC-CQLDIQFSNLDELQVNFNNDRPRDFTNPNLP--TEQKG 200
             L+G  IYDG  C+L + +S   +L V   +D+ RD+T P+L     QKG
Sbjct: 300 EALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG 350


>AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding
           protein 2 | chr5:21568393-21571537 REVERSE LENGTH=429
          Length = 429

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 115/192 (59%), Gaps = 15/192 (7%)

Query: 16  SQNDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNV 71
           ++ +L++L +PFG +  TK  +   +NQA ++ +D+  A+  + +YA+  +P+ +RG+ V
Sbjct: 30  TEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTV 89

Query: 72  YVQFSSHQELTTMDQTQAREDEPNRILLVTVH-HMLYPITVDVLHQVFSPNGYVEKIVTF 130
           Y+Q+S+ QE+     T    D    +LLVT+       +++DVLH VFS  G+V KI TF
Sbjct: 90  YLQYSNRQEIVNNKTT---ADVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTF 146

Query: 131 QKSAGFQALIQFQSCQSAITARSTLQGRNI-------YDGCCQLDIQFSNLDELQVNFNN 183
           +K+AG+QAL+QF   ++A  A+  L GR+I         G C L I +S   +L V F +
Sbjct: 147 EKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQS 206

Query: 184 DRPRDFTNPNLP 195
            R RD+TNP LP
Sbjct: 207 HRSRDYTNPYLP 218



 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 54/219 (24%)

Query: 19  DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAVSALQFYANVQPSIRGRNV---- 71
           D+L L F  FG + K+      A  QAL+Q  D  +A +A       + ++ GR++    
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAA-------KLALDGRSIPRYL 180

Query: 72  ----------YVQFSSHQELTTMDQTQARED----------------------------E 93
                      + +S+H +LT   Q+    D                            E
Sbjct: 181 LAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKME 240

Query: 94  P-NRILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKSAGFQALIQFQSCQSAITAR 152
           P + +LL ++ +M Y +T+DVLH VF+  G V+KI  F K+ G QALIQ+   Q+A+ A+
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAK 300

Query: 153 STLQGRNIYDGC-CQLDIQFSNLDELQVNFNNDRPRDFT 190
             L+G  IYDG  C+L I +S   +L +  NNDR RD+T
Sbjct: 301 EALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339


>AT5G53180.2 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding
           protein 2 | chr5:21568393-21571081 REVERSE LENGTH=329
          Length = 329

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 53/215 (24%)

Query: 22  QLFQPFGVITKLVMLR--AKNQALLQMQDVPSAVSALQFYANVQPSIRGRNV-------- 71
            +F  FG + K+      A  QAL+Q  D  +A +A       + ++ GR++        
Sbjct: 32  HVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAA-------KLALDGRSIPRYLLAET 84

Query: 72  ------YVQFSSHQELTTMDQTQARED----------------------------EP-NR 96
                  + +S+H +LT   Q+    D                            EP + 
Sbjct: 85  VGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESN 144

Query: 97  ILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKSAGFQALIQFQSCQSAITARSTLQ 156
           +LL ++ +M Y +T+DVLH VF+  G V+KI  F K+ G QALIQ+   Q+A+ A+  L+
Sbjct: 145 VLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALE 204

Query: 157 GRNIYDGC-CQLDIQFSNLDELQVNFNNDRPRDFT 190
           G  IYDG  C+L I +S   +L +  NNDR RD+T
Sbjct: 205 GHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 239



 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 116 QVFSPNGYVEKIVTFQKSAGFQALIQFQSCQSAITARSTLQGRNI-------YDGCCQLD 168
            VFS  G+V KI TF+K+AG+QAL+QF   ++A  A+  L GR+I         G C L 
Sbjct: 32  HVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 91

Query: 169 IQFSNLDELQVNFNNDRPRDFTNPNLP 195
           I +S   +L V F + R RD+TNP LP
Sbjct: 92  ITYSAHTDLTVKFQSHRSRDYTNPYLP 118


>AT3G01150.2 | Symbols: PTB | polypyrimidine tract-binding protein 1
           | chr3:51732-54344 FORWARD LENGTH=370
          Length = 370

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 97  ILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKSAGFQALIQFQSCQSAITARSTLQ 156
           +LL  + +M Y +TVDVLH VFS  G V+KI  F+K+   QALIQ+    +A  A+  L+
Sbjct: 215 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 274

Query: 157 GRNIYDGC-CQLDIQFSNLDELQVNFNNDRPRDFTNPNLP--TEQKG 200
           G  IYDG  C+L + +S   +L V   +D+ RD+T P+L     QKG
Sbjct: 275 GHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG 321



 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 42/193 (21%)

Query: 17  QNDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAVSALQFYANV-QPS-IRGRNVY 72
           + +L+ L + FG I  TK  +   +NQA ++  D+  A+S + +YA+  +P+ IRG+ VY
Sbjct: 30  EEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVY 89

Query: 73  VQFSSHQELTTMDQTQAREDEPNRILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQK 132
           +Q+S+  E+      Q+  D P  +LL                            VTF+ 
Sbjct: 90  IQYSNRHEIVN---NQSPGDVPGNVLL----------------------------VTFEG 118

Query: 133 SAGFQALIQFQSCQSAITARSTLQGRNI-------YDGCCQLDIQFSNLDELQVNFNNDR 185
               +AL+QF   ++A  ARS L GR+I       + G C L + +S   +L + F + R
Sbjct: 119 VESHEALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHR 178

Query: 186 PRDFTNPNLPTEQ 198
            RD+TNP LP  Q
Sbjct: 179 SRDYTNPYLPVNQ 191