Miyakogusa Predicted Gene

Lj0g3v0012389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0012389.1 CUFF.648.1
         (534 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interactin...   801   0.0  
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interactin...   758   0.0  
AT3G45950.1 | Symbols:  | Pre-mRNA splicing Prp18-interacting fa...   495   e-140

>AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting
           factor | chr1:24418295-24421231 REVERSE LENGTH=535
          Length = 535

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/535 (71%), Positives = 433/535 (80%), Gaps = 2/535 (0%)

Query: 1   MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
           MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN+E+P
Sbjct: 1   MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61  SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
           SLKHQRKWKSDPNYTKSWYDRGAK FQA+K+RKGAC+NCGAMTH AK+CM+RPRK GAK+
Sbjct: 61  SLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKY 120

Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXXXXXXXXXXXXX 180
           TN +IAPDEK+E+FELDYDGKRDRWNGYD STY RVI+ YEA+++AR             
Sbjct: 121 TNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVIDLYEAKEDARKKYLKEQQLKKLE 180

Query: 181 XSDQN--GEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRI 238
             + N  G+ + S        LRVDEAKVDES+QMDFAKVEKRVR         VRNLRI
Sbjct: 181 EKNNNEKGDDANSDGEEDEDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRI 240

Query: 239 REDTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNI 298
           REDTAKYLLNL+VNSAHYDPKTRSMREDPLPDADPN+KFYLGDNQYRNSGQALEFK+LNI
Sbjct: 241 REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDKFYLGDNQYRNSGQALEFKQLNI 300

Query: 299 HAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPREL 358
           H+WEAFDKGQD+HMQAAPSQAELLYK+F+V KEKLKSQTKDTI++KYGNAA ED++P EL
Sbjct: 301 HSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLKSQTKDTIMDKYGNAATEDEIPMEL 360

Query: 359 LLGQSEGQVEYDRAGRIIKGQEAAVPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQT 418
           LLGQSE QVEYDRAGRIIKGQE  +P+SKYEEDV+ NNHT+VWGS+WKDHQWG+KCC+Q 
Sbjct: 361 LLGQSERQVEYDRAGRIIKGQEVILPKSKYEEDVHANNHTSVWGSYWKDHQWGYKCCQQI 420

Query: 419 IRNSYCTXXXXXXXXXXXNDLMRANIARKEAAAEDAKPMEEKRLATWGTDVPXXXXXXXX 478
           IRNSYCT            DLM+ANIARKEA  E  K +EEKR+A+WGTD+P        
Sbjct: 421 IRNSYCTGSAGIEAAEAALDLMKANIARKEATEESPKKVEEKRMASWGTDIPEDLELNEE 480

Query: 479 XXXXXXXXXXXXXXXXXXXXXXXYNVRWNDEVTAEDMEAYRMKKVHSDDPMKDFL 533
                                  YNV++N++VT E+MEAYRMK+VH +DPMKDFL
Sbjct: 481 ALANALKKEDLSRREEKDERKRKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDFL 535


>AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting
           factor | chr4:17486679-17489123 FORWARD LENGTH=536
          Length = 536

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/534 (67%), Positives = 421/534 (78%), Gaps = 2/534 (0%)

Query: 1   MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
           MATASVAFKSREDHRK++ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL +E+P
Sbjct: 1   MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61  SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
           SLKHQ+ WK +P   K WYDRG K +QA+++RKGAC NCGAMTH +K+CM+RPRK GAK+
Sbjct: 61  SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKY 120

Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXX--XXXXXXXXX 178
           TN +IA DEK+E+FELDYDGKRDRWNGYD STY  V++RY+A++EAR             
Sbjct: 121 TNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKYLKEQQLKKLE 180

Query: 179 XXXSDQNGEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRI 238
              +++NG+ + S        LRVDEAKVDES+QMDFAKVEKRVR         VRNLRI
Sbjct: 181 EKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRI 240

Query: 239 REDTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNI 298
           REDTAKYLLNL+VNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFK++NI
Sbjct: 241 REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKQINI 300

Query: 299 HAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPREL 358
           H+ EAFDKG D+HMQAAPSQAELLYKNFKV KEKLK+QTKDTI+EKYGNAA E ++P EL
Sbjct: 301 HSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATEGEIPMEL 360

Query: 359 LLGQSEGQVEYDRAGRIIKGQEAAVPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQT 418
           LLGQSE Q+EYDRAGRI+KGQE  +P+SKYEEDV+ NNHT+VWGSWWKDHQWG+KCC+QT
Sbjct: 361 LLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANNHTSVWGSWWKDHQWGYKCCQQT 420

Query: 419 IRNSYCTXXXXXXXXXXXNDLMRANIARKEAAAEDAKPMEEKRLATWGTDVPXXXXXXXX 478
           IRNSYCT            DLM+ANIARKEA+ E  K +EEK++ATWGTD+P        
Sbjct: 421 IRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKKVEEKKMATWGTDIPEDLELNEE 480

Query: 479 XXXXXXXXXXXXXXXXXXXXXXXYNVRWNDEVTAEDMEAYRMKKVHSDDPMKDF 532
                                  YNV + ++VT+E+MEAYRMK+VH +DPM++F
Sbjct: 481 ALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNF 534


>AT3G45950.1 | Symbols:  | Pre-mRNA splicing Prp18-interacting
           factor | chr3:16889461-16890618 REVERSE LENGTH=385
          Length = 385

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/364 (66%), Positives = 287/364 (78%), Gaps = 8/364 (2%)

Query: 1   MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
           MATASVAFKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++  P Y  +E+P
Sbjct: 1   MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60

Query: 61  SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
           SLKHQ+ WK+ P  T S+YDRGAKT+QA+K+RKGAC+NCGAMTHD K+CMERPRK GAK+
Sbjct: 61  SLKHQKNWKTKPVSTTSYYDRGAKTYQAEKYRKGACQNCGAMTHDVKTCMERPRKVGAKY 120

Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXXXXXXXXXXXXX 180
           T+K+IAPDEK+E+ E DYDGKRDRWNGYD S+Y  V +R+EA++ AR             
Sbjct: 121 TDKNIAPDEKIESLEFDYDGKRDRWNGYDPSSYCHVRDRHEAKENAR-EKYLNEQQLIAK 179

Query: 181 XSDQNGEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRIRE 240
             ++N +G           LRVDEAK+DES Q+DFAKV+KRVR         VRNLRIRE
Sbjct: 180 LEEKNIDGE-------EEDLRVDEAKIDESMQVDFAKVKKRVRTTDGGSKGTVRNLRIRE 232

Query: 241 DTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNIHA 300
           D AKYLLNL+VNSA+YDPK+RSMREDPLP  DPNEKF L DNQYRNSGQA+EFK+ N+++
Sbjct: 233 DPAKYLLNLDVNSAYYDPKSRSMREDPLPYTDPNEKFCLRDNQYRNSGQAIEFKQQNMYS 292

Query: 301 WEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPRELLL 360
            EAFDKGQD+HMQAAPSQAEL YK  K+ KEKL SQ KD I+ KYG+AA +D +P ELLL
Sbjct: 293 CEAFDKGQDIHMQAAPSQAELCYKRVKIAKEKLNSQRKDAIIAKYGDAAAKDDIPMELLL 352

Query: 361 GQSE 364
           GQS+
Sbjct: 353 GQSK 356