Miyakogusa Predicted Gene
- Lj0g3v0012389.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0012389.1 CUFF.648.1
(534 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interactin... 801 0.0
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interactin... 758 0.0
AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting fa... 495 e-140
>AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting
factor | chr1:24418295-24421231 REVERSE LENGTH=535
Length = 535
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/535 (71%), Positives = 433/535 (80%), Gaps = 2/535 (0%)
Query: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN+E+P
Sbjct: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60
Query: 61 SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
SLKHQRKWKSDPNYTKSWYDRGAK FQA+K+RKGAC+NCGAMTH AK+CM+RPRK GAK+
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKY 120
Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXXXXXXXXXXXXX 180
TN +IAPDEK+E+FELDYDGKRDRWNGYD STY RVI+ YEA+++AR
Sbjct: 121 TNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVIDLYEAKEDARKKYLKEQQLKKLE 180
Query: 181 XSDQN--GEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRI 238
+ N G+ + S LRVDEAKVDES+QMDFAKVEKRVR VRNLRI
Sbjct: 181 EKNNNEKGDDANSDGEEDEDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRI 240
Query: 239 REDTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNI 298
REDTAKYLLNL+VNSAHYDPKTRSMREDPLPDADPN+KFYLGDNQYRNSGQALEFK+LNI
Sbjct: 241 REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDKFYLGDNQYRNSGQALEFKQLNI 300
Query: 299 HAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPREL 358
H+WEAFDKGQD+HMQAAPSQAELLYK+F+V KEKLKSQTKDTI++KYGNAA ED++P EL
Sbjct: 301 HSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLKSQTKDTIMDKYGNAATEDEIPMEL 360
Query: 359 LLGQSEGQVEYDRAGRIIKGQEAAVPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQT 418
LLGQSE QVEYDRAGRIIKGQE +P+SKYEEDV+ NNHT+VWGS+WKDHQWG+KCC+Q
Sbjct: 361 LLGQSERQVEYDRAGRIIKGQEVILPKSKYEEDVHANNHTSVWGSYWKDHQWGYKCCQQI 420
Query: 419 IRNSYCTXXXXXXXXXXXNDLMRANIARKEAAAEDAKPMEEKRLATWGTDVPXXXXXXXX 478
IRNSYCT DLM+ANIARKEA E K +EEKR+A+WGTD+P
Sbjct: 421 IRNSYCTGSAGIEAAEAALDLMKANIARKEATEESPKKVEEKRMASWGTDIPEDLELNEE 480
Query: 479 XXXXXXXXXXXXXXXXXXXXXXXYNVRWNDEVTAEDMEAYRMKKVHSDDPMKDFL 533
YNV++N++VT E+MEAYRMK+VH +DPMKDFL
Sbjct: 481 ALANALKKEDLSRREEKDERKRKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDFL 535
>AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting
factor | chr4:17486679-17489123 FORWARD LENGTH=536
Length = 536
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/534 (67%), Positives = 421/534 (78%), Gaps = 2/534 (0%)
Query: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
MATASVAFKSREDHRK++ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL +E+P
Sbjct: 1 MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60
Query: 61 SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
SLKHQ+ WK +P K WYDRG K +QA+++RKGAC NCGAMTH +K+CM+RPRK GAK+
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKY 120
Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXX--XXXXXXXXX 178
TN +IA DEK+E+FELDYDGKRDRWNGYD STY V++RY+A++EAR
Sbjct: 121 TNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKYLKEQQLKKLE 180
Query: 179 XXXSDQNGEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRI 238
+++NG+ + S LRVDEAKVDES+QMDFAKVEKRVR VRNLRI
Sbjct: 181 EKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRI 240
Query: 239 REDTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNI 298
REDTAKYLLNL+VNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFK++NI
Sbjct: 241 REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKQINI 300
Query: 299 HAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPREL 358
H+ EAFDKG D+HMQAAPSQAELLYKNFKV KEKLK+QTKDTI+EKYGNAA E ++P EL
Sbjct: 301 HSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATEGEIPMEL 360
Query: 359 LLGQSEGQVEYDRAGRIIKGQEAAVPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQT 418
LLGQSE Q+EYDRAGRI+KGQE +P+SKYEEDV+ NNHT+VWGSWWKDHQWG+KCC+QT
Sbjct: 361 LLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANNHTSVWGSWWKDHQWGYKCCQQT 420
Query: 419 IRNSYCTXXXXXXXXXXXNDLMRANIARKEAAAEDAKPMEEKRLATWGTDVPXXXXXXXX 478
IRNSYCT DLM+ANIARKEA+ E K +EEK++ATWGTD+P
Sbjct: 421 IRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKKVEEKKMATWGTDIPEDLELNEE 480
Query: 479 XXXXXXXXXXXXXXXXXXXXXXXYNVRWNDEVTAEDMEAYRMKKVHSDDPMKDF 532
YNV + ++VT+E+MEAYRMK+VH +DPM++F
Sbjct: 481 ALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNF 534
>AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting
factor | chr3:16889461-16890618 REVERSE LENGTH=385
Length = 385
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/364 (66%), Positives = 287/364 (78%), Gaps = 8/364 (2%)
Query: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
MATASVAFKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++ P Y +E+P
Sbjct: 1 MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60
Query: 61 SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
SLKHQ+ WK+ P T S+YDRGAKT+QA+K+RKGAC+NCGAMTHD K+CMERPRK GAK+
Sbjct: 61 SLKHQKNWKTKPVSTTSYYDRGAKTYQAEKYRKGACQNCGAMTHDVKTCMERPRKVGAKY 120
Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXXXXXXXXXXXXX 180
T+K+IAPDEK+E+ E DYDGKRDRWNGYD S+Y V +R+EA++ AR
Sbjct: 121 TDKNIAPDEKIESLEFDYDGKRDRWNGYDPSSYCHVRDRHEAKENAR-EKYLNEQQLIAK 179
Query: 181 XSDQNGEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRIRE 240
++N +G LRVDEAK+DES Q+DFAKV+KRVR VRNLRIRE
Sbjct: 180 LEEKNIDGE-------EEDLRVDEAKIDESMQVDFAKVKKRVRTTDGGSKGTVRNLRIRE 232
Query: 241 DTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNIHA 300
D AKYLLNL+VNSA+YDPK+RSMREDPLP DPNEKF L DNQYRNSGQA+EFK+ N+++
Sbjct: 233 DPAKYLLNLDVNSAYYDPKSRSMREDPLPYTDPNEKFCLRDNQYRNSGQAIEFKQQNMYS 292
Query: 301 WEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPRELLL 360
EAFDKGQD+HMQAAPSQAEL YK K+ KEKL SQ KD I+ KYG+AA +D +P ELLL
Sbjct: 293 CEAFDKGQDIHMQAAPSQAELCYKRVKIAKEKLNSQRKDAIIAKYGDAAAKDDIPMELLL 352
Query: 361 GQSE 364
GQS+
Sbjct: 353 GQSK 356