Miyakogusa Predicted Gene

Lj0g3v0012039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0012039.1 tr|B9H4T7|B9H4T7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_558531 PE=4 SV=1,41.67,0.00001,
,CUFF.611.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39900.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   122   1e-28

>AT4G39900.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:18508569-18510289 REVERSE LENGTH=245
          Length = 245

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 102/176 (57%), Gaps = 23/176 (13%)

Query: 1   MLP-EGDESANCALPLAFLSILEVPNQAKSSMCLDDQINCQ---NCIDVQMESSDVYSQC 56
           +LP EG+    C      LS ++    +K+ M +D Q+NCQ   N I+V +  +D Y  C
Sbjct: 76  VLPDEGNTIPQCTSHFTLLSFVKALLPSKNQMLIDAQLNCQKTQNRINVLLGGTDSYQSC 135

Query: 57  VIDIPSVNGNPVSPESFEEGVESFKTGNSPTSVLWRESSLKVGAKLMQSLSNLSNQREPS 116
           V+DI    GN                G + TS     +S+K  +  MQ +     QR+ S
Sbjct: 136 VVDINVEKGN---------------GGETVTSHDEVVASMKSESVHMQKVL----QRQAS 176

Query: 117 KLTDKPVTEKVHDMPINKWRRYKRSASFDSRKVALLFSILSSLGTLVLIYLTLRVR 172
             TDK ++E+ HD P N+WRRYKR+ASFDSRK+ +LFSILSS+GTL+LIYLTLRV+
Sbjct: 177 LSTDKALSERCHDAPTNRWRRYKRAASFDSRKIVILFSILSSVGTLILIYLTLRVK 232