Miyakogusa Predicted Gene
- Lj0g3v0011919.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0011919.1 tr|G7IX03|G7IX03_MEDTR NBS-LRR type disease
resistance protein OS=Medicago truncatula
GN=MTR_3g03234,49.28,0.0000004,LRR_8,NULL; CG2471-PA (LP11415P),NULL;
LEUCINE-RICH REPEAT-CONTAINING PROTEIN,NULL; no
description,N,NODE_59649_length_630_cov_52.855556.path1.1
(182 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14470.1 | Symbols: | NB-ARC domain-containing disease resis... 133 8e-32
AT3G14460.1 | Symbols: | LRR and NB-ARC domains-containing dise... 108 3e-24
AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing dis... 60 8e-10
AT3G46730.1 | Symbols: | NB-ARC domain-containing disease resis... 58 4e-09
AT1G12280.1 | Symbols: | LRR and NB-ARC domains-containing dise... 53 1e-07
AT1G12970.1 | Symbols: PIRL3 | plant intracellular ras group-rel... 49 2e-06
AT5G66910.1 | Symbols: | Disease resistance protein (CC-NBS-LRR... 47 5e-06
AT1G12220.2 | Symbols: RPS5 | Disease resistance protein (CC-NBS... 47 5e-06
AT1G12220.1 | Symbols: RPS5 | Disease resistance protein (CC-NBS... 47 5e-06
AT1G69550.1 | Symbols: | disease resistance protein (TIR-NBS-LR... 47 7e-06
AT3G26500.1 | Symbols: PIRL2 | plant intracellular ras group-rel... 47 8e-06
>AT3G14470.1 | Symbols: | NB-ARC domain-containing disease
resistance protein | chr3:4857940-4861104 FORWARD
LENGTH=1054
Length = 1054
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 1 MAEGFLQAL-GENTMELAGDDCFNELLSRSLIHKDEAVKEKFRMHELVYDLARLVSGKGS 59
MAEGFLQ +E G++ F+EL SRSL+ K K ++ MH+ + +LA+ SG+ S
Sbjct: 452 MAEGFLQQTRSSKNLEELGNEYFSELESRSLLQK---TKTRYIMHDFINELAQFASGEFS 508
Query: 60 CCFEGN---EIQKRVRHLSYSRDKYDGSKKFESFYDLKSLRTFLPRSLHGSD--CFITTR 114
FE ++ +R R+LSY RD Y +FE+ ++K LRTFLP SL S C +
Sbjct: 509 SKFEDGCKLQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQM 568
Query: 115 VLPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTETFTLYNLQ 174
V LLP L LR+LSLS+YK PD N+ H R+LDLS T + +LP +YNLQ
Sbjct: 569 VSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQ 628
Query: 175 TLLLSHC 181
TLLLS+C
Sbjct: 629 TLLLSYC 635
>AT3G14460.1 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr3:4851990-4856264 REVERSE
LENGTH=1424
Length = 1424
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 14 MELAGDDCFNELLSRSLIHKDEAVKEKFRMHELVYDLARLVSGKGSCCFEGN---EIQKR 70
+E G+D +L+++S + + F MH+L+ DLA+ VSG E + EI
Sbjct: 458 LEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPEIPST 517
Query: 71 VRHLSYSRDKYDGSKKFESFYDLKSLRTFLPRSLHGS--DCFITTRVLPDLLPKLRCLRI 128
RH S+SR + D S F S + LRT LP + S +T +VL LL L LRI
Sbjct: 518 TRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRI 577
Query: 129 LSLSNYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTETFTLYNLQTLLLSHCK 182
LSLS+Y+ IT LP S+ L LRYLDLS+T I+ LP TL NLQTLLLS+C+
Sbjct: 578 LSLSHYQ-ITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCR 630
>AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing
disease resistance protein | chr3:2226244-2229024
REVERSE LENGTH=926
Length = 926
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 28/196 (14%)
Query: 1 MAEGFLQALGENTMELAGDDCFNELLSRSLIH----KDEAVKEKFRMHELVYDLARLVSG 56
MA+ F++ + E D NEL+ R+++ + F+MH++++++A VS
Sbjct: 457 MAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSK 516
Query: 57 KGSCCFEGNEIQKRVRHLSYSRDKYDGSKKFESFYDLKS-----LRTFLPRSLHGSDCFI 111
C N D DG E+ + S + P S+ ++
Sbjct: 517 LERFCDVYN-------------DDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHS 563
Query: 112 -----TTRVLPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTE 166
+ + +LLP L LR L L + +I+KLPD + + +L+YL+LS T ++ LP
Sbjct: 564 LLVCSSAKHKMELLPSLNLLRALDLED-SSISKLPDCLVTMFNLKYLNLSKTQVKELPKN 622
Query: 167 TFTLYNLQTLLLSHCK 182
L NL+TL H K
Sbjct: 623 FHKLVNLETLNTKHSK 638
>AT3G46730.1 | Symbols: | NB-ARC domain-containing disease
resistance protein | chr3:17213069-17215612 REVERSE
LENGTH=847
Length = 847
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 1 MAEGFLQALGENTMELAGDDCFNELLSRSLIHKDEAVKEKF---RMHELVYDLARLVSGK 57
+AEGF+Q E ME +EL+ RSL+ + + K R+H+L+ DLA + +
Sbjct: 443 VAEGFIQEDEEMMMEDVARCYIDELVDRSLVKAERIERGKVMSCRIHDLLRDLAIKKAKE 502
Query: 58 GSCCFEGNEIQ--------KRVRHLSYSRDKYDGSKKFESFYDLKSLRTFLPRSLHGSDC 109
+ NE Q + V HL D Y ++ K +R+FL
Sbjct: 503 LNFVNVYNEKQHSSDICRREVVHHLM--NDYYLCDRRVN-----KRMRSFLFIGERRGFG 555
Query: 110 FITTRVLPDLLPKLRCLRILSLSNY----KNITK-LPDSIGNLVHLRYLDLSNTSIRRLP 164
++ T L KL+ LR+L++ KNI+ LPD IG L+HLRYL +++T + LP
Sbjct: 556 YVNTTNL-----KLKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLGIADTYVSILP 610
Query: 165 TETFTLYNLQTL 176
L LQTL
Sbjct: 611 ASISNLRFLQTL 622
>AT1G12280.1 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr1:4174875-4177559 REVERSE
LENGTH=894
Length = 894
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 25 LLSRSLIHKDEAV-KEKFRMHELVYDLARLVSG-----KGSCCFEGN----EIQK----- 69
+L R+ + +EA+ KE+ +MH++V ++A ++ K C + E+ K
Sbjct: 457 ILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWS 516
Query: 70 RVRHLSYSRDKYDGSKKFESFYDLKSLRTFLPRS---LHGSDCFITTRVLPDLLPKLRCL 126
VR +S ++ + +L +L FL ++ LH SD F R +P L+
Sbjct: 517 SVRRMSLMENEIEILSGSPECLELTTL--FLQKNDSLLHISDEFF--RCIPMLV------ 566
Query: 127 RILSLSNYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTETFTLYNLQTLLLSHCK 182
+L LS ++ KLP+ I LV LRYLDLS T I+RLP L L+ L L + K
Sbjct: 567 -VLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMK 621
>AT1G12970.1 | Symbols: PIRL3 | plant intracellular ras
group-related LRR 3 | chr1:4423727-4425632 FORWARD
LENGTH=464
Length = 464
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 116 LPDLLPKLRCLRILSLS-NYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTETFTLYNLQ 174
LP + +L L +++LS N+ ++ +LPD+I +L +LR LDLSN IR LP F L L+
Sbjct: 315 LPIAIGRLTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNNQIRVLPDSFFRLEKLE 374
Query: 175 TLLLSH 180
L L
Sbjct: 375 KLNLDQ 380
>AT5G66910.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:26718338-26721133 REVERSE
LENGTH=815
Length = 815
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 116 LPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDL-SNTSIRRLPTETFTLYNLQ 174
LP +P++ L+ LS++N +++LP++IGNL L L + S ++ LP T L NL+
Sbjct: 671 LPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRMCSCMNLSELPEATERLSNLR 730
Query: 175 TLLLSHC 181
+L +SHC
Sbjct: 731 SLDISHC 737
>AT1G12220.2 | Symbols: RPS5 | Disease resistance protein
(CC-NBS-LRR class) family | chr1:4145011-4147680 FORWARD
LENGTH=889
Length = 889
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 1 MAEGFL-QALGENTMELAGDDCFNELLSRSLIHKDEAVKEKFRMHELVYDLARLVSG--- 56
++EGF+ + G G + L+ L+ ++E K +MH++V ++A +S
Sbjct: 434 ISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLG 493
Query: 57 --KGSCCFEGN----EIQKRVRHLSYSRDKYDGSKKFESFYDLKSLRTFLPRSLHGSDCF 110
K C E+ K V+ + R + + E +D L +D
Sbjct: 494 KQKEKCIVRAGVGLREVPK-VKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVV 552
Query: 111 ITTRVLPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTETFTL 170
+ +P L +L LS +++ +LP+ I L LRY +LS T I +LP +TL
Sbjct: 553 KISAEFFRCMPHLV---VLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTL 609
Query: 171 YNLQTLLLSH 180
L L L H
Sbjct: 610 KKLIHLNLEH 619
>AT1G12220.1 | Symbols: RPS5 | Disease resistance protein
(CC-NBS-LRR class) family | chr1:4145011-4147680 FORWARD
LENGTH=889
Length = 889
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 1 MAEGFL-QALGENTMELAGDDCFNELLSRSLIHKDEAVKEKFRMHELVYDLARLVSG--- 56
++EGF+ + G G + L+ L+ ++E K +MH++V ++A +S
Sbjct: 434 ISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLG 493
Query: 57 --KGSCCFEGN----EIQKRVRHLSYSRDKYDGSKKFESFYDLKSLRTFLPRSLHGSDCF 110
K C E+ K V+ + R + + E +D L +D
Sbjct: 494 KQKEKCIVRAGVGLREVPK-VKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVV 552
Query: 111 ITTRVLPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSNTSIRRLPTETFTL 170
+ +P L +L LS +++ +LP+ I L LRY +LS T I +LP +TL
Sbjct: 553 KISAEFFRCMPHLV---VLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTL 609
Query: 171 YNLQTLLLSH 180
L L L H
Sbjct: 610 KKLIHLNLEH 619
>AT1G69550.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class) | chr1:26148836-26153374 REVERSE LENGTH=1400
Length = 1400
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 102 RSLHGSDCFITTRVLPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSN-TSI 160
++L+ S+C LP + L L+ L LS ++ +LP SIGNL++L+ LDLS +S+
Sbjct: 935 KTLNLSECSSLVE-LPSSIGNLINLQELYLSECSSLVELPSSIGNLINLKKLDLSGCSSL 993
Query: 161 RRLPTETFTLYNLQTLLLSHC 181
LP L NL+TL LS C
Sbjct: 994 VELPLSIGNLINLKTLNLSEC 1014
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 102 RSLHGSDCFITTRVLPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSN-TSI 160
++L+ S+C LP + L L+ L LS ++ +LP SIGNL++L+ LDLS +S+
Sbjct: 1007 KTLNLSECSSLVE-LPSSIGNLINLQELYLSECSSLVELPSSIGNLINLKKLDLSGCSSL 1065
Query: 161 RRLPTETFTLYNLQTLLLSHC 181
LP L NL+TL LS C
Sbjct: 1066 VELPLSIGNLINLKTLNLSGC 1086
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 116 LPDLLPKLRCLRILSLSNYKNITKLPDSIGNLVHLRYLDLSN-TSIRRLPTETFTLYNLQ 174
LP + L L+ L LS ++ +LP SIGNL++L+ L+LS +S+ LP+ L NLQ
Sbjct: 972 LPSSIGNLINLKKLDLSGCSSLVELPLSIGNLINLKTLNLSECSSLVELPSSIGNLINLQ 1031
Query: 175 TLLLSHC 181
L LS C
Sbjct: 1032 ELYLSEC 1038
>AT3G26500.1 | Symbols: PIRL2 | plant intracellular ras
group-related LRR 2 | chr3:9708195-9709944 REVERSE
LENGTH=471
Length = 471
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 90 FYDLKSLRTFLPRSLHGSDCFITTRVLPDLLPKLRCLRILSLS-NYKNITKLPDSIGNLV 148
Y+LK L + +HG +P+ + +L L +L+LS N+ N+ +PD+I +L
Sbjct: 298 MYNLKYLDAHM-NEIHG---------IPNSIGRLTKLEVLNLSSNFNNLMGVPDTITDLT 347
Query: 149 HLRYLDLSNTSIRRLPTETFTLYNLQTLLLSH 180
+LR LDLSN I+ +P + L L+ L L
Sbjct: 348 NLRELDLSNNQIQAIPDSFYRLRKLEKLNLDQ 379