Miyakogusa Predicted Gene

Lj0g3v0011469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0011469.1 tr|D0FZ14|D0FZ14_SOYBN Cryptochrome1 OS=Glycine
max GN=GmCRY1c1 PE=2 SV=1,89.03,0,Cryptochrome_C,Cryptochrome
C-terminal; FAD_binding_7,DNA photolyase, FAD-binding/Cryptochrome,
C-te,NODE_41817_length_1369_cov_269.544922.path1.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08920.1 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochr...   359   1e-99
AT1G04400.1 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | crypto...   179   2e-45
AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | crypto...   179   2e-45
AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein | ch...    67   1e-11

>AT4G08920.1 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochrome
           1 | chr4:5724260-5726905 FORWARD LENGTH=681
          Length = 681

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/319 (63%), Positives = 230/319 (72%), Gaps = 28/319 (8%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLESDALGWQYI+GT+PD RE DRIDNPQFEGYK DPNGEYVRRWLPEL
Sbjct: 381 MKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 440

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           SRLPT+WIHHPWNAPESVLQAAGIELGSNYPLPIVG+D AKARL EAL QMWQ EAASRA
Sbjct: 441 SRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAASRA 500

Query: 121 AMENGTEEGLGDSS--ESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVPSITSSH 178
           A+ENG+EEGLGDS+  E API FP+D+ MEE   EP R NP    RRY+DQMVPSITSS 
Sbjct: 501 AIENGSEEGLGDSAEVEEAPIEFPRDITMEET--EPTRLNP---NRRYEDQMVPSITSSL 555

Query: 179 VRVEEEEIAS-DLRNSAQDNRAEVPMN-VNT---QQNAREAVNQGVLQTINRNNTQLQHN 233
           +R EE+E +S +LRNS  D+RAEVP N VNT   QQ   E  +  V   I   N ++   
Sbjct: 556 IRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTAMIPEFNIRIVAE 615

Query: 234 NTVWLRNXXXXXXXXXXXXXXXXXXGGVVPVWSPPASSFSEQFVDDENGIGA---SSSYL 290
           +T                       GG+VP WSP    +SEQF  +ENGIG    +SSYL
Sbjct: 616 ST-------EDSTAESSSSGRRERSGGIVPEWSP---GYSEQFPSEENGIGGGSTTSSYL 665

Query: 291 QRHPQSHQMMNWTRLPQTG 309
           Q H   H+++NW RL QTG
Sbjct: 666 QNH---HEILNWRRLSQTG 681


>AT1G04400.1 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 |
           cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612
          Length = 612

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 122/189 (64%), Gaps = 21/189 (11%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLE D LGWQYISG+IPDG ELDR+DNP  +G K DP GEY+R+WLPEL
Sbjct: 378 MKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPEL 437

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +RLPTEWIHHPW+AP +VL+A+G+ELG+NY  PIV ID A+  L +A+ +  + +    A
Sbjct: 438 ARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAISRTREAQIMIGA 497

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVPSIT----S 176
           A     +E + DS E    A   + I E      V +N         DQ VPS      S
Sbjct: 498 A----PDEIVADSFE----ALGANTIKEPGLCPSVSSN---------DQQVPSAVRYNGS 540

Query: 177 SHVRVEEEE 185
             V+ EEEE
Sbjct: 541 KRVKPEEEE 549


>AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 |
           cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612
          Length = 612

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 122/189 (64%), Gaps = 21/189 (11%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLE D LGWQYISG+IPDG ELDR+DNP  +G K DP GEY+R+WLPEL
Sbjct: 378 MKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPEL 437

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +RLPTEWIHHPW+AP +VL+A+G+ELG+NY  PIV ID A+  L +A+ +  + +    A
Sbjct: 438 ARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAISRTREAQIMIGA 497

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVPSIT----S 176
           A     +E + DS E    A   + I E      V +N         DQ VPS      S
Sbjct: 498 A----PDEIVADSFE----ALGANTIKEPGLCPSVSSN---------DQQVPSAVRYNGS 540

Query: 177 SHVRVEEEE 185
             V+ EEEE
Sbjct: 541 KRVKPEEEE 549


>AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein |
           chr3:5293475-5296548 REVERSE LENGTH=556
          Length = 556

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 4   FWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPELSRL 63
           F   L+D+D   +   W ++S +     + +RI +P   G K DP+G+Y+R +LP L  +
Sbjct: 409 FERLLIDSDWAINNGNWMWLSCS-SFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDM 467

Query: 64  PTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRAAME 123
           P ++I+ PW AP SV   A   +G +YP P+V  D+A    +E   +M +  A ++    
Sbjct: 468 PKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSAS---KECKRKMGEAYALNKKMDG 524

Query: 124 NGTEEGLGD 132
              EE L D
Sbjct: 525 KVDEENLRD 533