Miyakogusa Predicted Gene
- Lj0g3v0008999.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0008999.1 tr|H8WVC7|H8WVC7_LOTJA E3 ubiquitin ligase-like
protein (Fragment) OS=Lotus japonicus GN=SINA5 PE=2
,100,0,PTHR10315:SF3,NULL; ZF_RING_2,Zinc finger, RING-type;
ZF_SIAH,Zinc finger, SIAH-type;
Sina,Seven-in-,NODE_92228_length_1275_cov_14.709804.path1.1
(285 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis... 470 e-133
AT2G41980.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 457 e-129
AT3G61790.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 402 e-112
AT4G27880.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 393 e-110
AT5G53360.1 | Symbols: | TRAF-like superfamily protein | chr5:2... 310 5e-85
AT3G13672.2 | Symbols: | TRAF-like superfamily protein | chr3:4... 206 2e-53
AT3G13672.1 | Symbols: | TRAF-like superfamily protein | chr3:4... 205 2e-53
AT5G37870.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 93 2e-19
AT5G37930.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 89 3e-18
AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 89 3e-18
AT1G66620.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 89 4e-18
AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 87 2e-17
AT5G62800.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 85 6e-17
AT1G66660.2 | Symbols: | Protein with RING/U-box and TRAF-like ... 83 2e-16
AT1G66630.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 79 4e-15
AT1G66650.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 78 9e-15
AT1G66610.2 | Symbols: | TRAF-like superfamily protein | chr1:2... 66 3e-11
AT1G66610.1 | Symbols: | TRAF-like superfamily protein | chr1:2... 59 4e-09
AT1G66660.1 | Symbols: | Protein with RING/U-box and TRAF-like ... 50 2e-06
>AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis 2
| chr3:21489612-21491085 FORWARD LENGTH=308
Length = 308
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/284 (77%), Positives = 249/284 (87%), Gaps = 1/284 (0%)
Query: 2 SKMEANINSTVTKSRVALDGKIGINSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCSNC 61
+K+E N N+ TK A GK GI+S N VY+LL+CPVCTNLMYPPIHQCPNGHTLCSNC
Sbjct: 26 AKVEVN-NNKPTKPGSAGIGKYGIHSNNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNC 84
Query: 62 KISMHNCCPTCFCDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFR 121
K+ + N CPTC +LGNIRCLALEKVAESLE+PCR Q+LGCHD+FPYY+ LKHEQ+CRFR
Sbjct: 85 KLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCHDIFPYYSKLKHEQHCRFR 144
Query: 122 PYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVF 181
PY CPYAGSECSV GDIPTL+VHLK DHKVD+HDGCTFNHRYVKSNPHEVENA WMLTVF
Sbjct: 145 PYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVF 204
Query: 182 NCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPRSI 241
NCF R FCLHFEAF LG APVY+AFLRF+G++NEA KF ++LEVGA+ RKL WQGIPRSI
Sbjct: 205 NCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSI 264
Query: 242 RNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITGHIWKDE 285
R+SHRKVRD QDGLIIPR+LALYFS GD+Q+LK ++TG IWK+E
Sbjct: 265 RDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308
>AT2G41980.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr2:17523494-17524692 REVERSE LENGTH=305
Length = 305
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 214/286 (74%), Positives = 245/286 (85%), Gaps = 6/286 (2%)
Query: 1 MSKMEANINSTVTKSRVALDGKIG-INSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCS 59
M+K+EAN T + S G IG +S N VY+LL+CPVCTNLMYPPIHQCPNGHTLCS
Sbjct: 25 MAKVEANSKPTKSGS-----GSIGKFHSSNGVYELLECPVCTNLMYPPIHQCPNGHTLCS 79
Query: 60 NCKISMHNCCPTCFCDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCR 119
+CK+ + N CPTC +LGNIRCLALEKVAESLE+PCR Q+LGC D+FPYY+ LKHEQ+CR
Sbjct: 80 SCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCQDIFPYYSKLKHEQHCR 139
Query: 120 FRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLT 179
FR Y CPYAGSECSV GDIPTL+ HLK DHKVD+HDGCTFNHRYVKSNPHEVENA WMLT
Sbjct: 140 FRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLT 199
Query: 180 VFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPR 239
VFNCF R FCLHFEAF LG APVY+AFLRF+G++NEA KF ++LEVGA+SRKL WQGIPR
Sbjct: 200 VFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPR 259
Query: 240 SIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITGHIWKDE 285
SIR+SHRKVRD QDGLIIPR+LALYFS DK++LK ++TG IWK+E
Sbjct: 260 SIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305
>AT3G61790.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr3:22871974-22873543 REVERSE LENGTH=326
Length = 326
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 180/261 (68%), Positives = 218/261 (83%)
Query: 25 INSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLAL 84
+ + V++LL+CPVCTN MYPPIHQC NGHTLCS CK +HN CPTC +LG+IRCLAL
Sbjct: 51 LPTTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLAL 110
Query: 85 EKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVH 144
EKVAESLELPC++ SLGC ++FPYY+ LKHE C FRPY CPYAGSECSV GDIP L+ H
Sbjct: 111 EKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAH 170
Query: 145 LKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYI 204
L+ DHKVD+H GCTFNHRYVKSNP EVENA WMLTVF+CF +YFCLHFEAF LG APVY+
Sbjct: 171 LRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYM 230
Query: 205 AFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALY 264
AFLRF+G++ EA + ++LEVG RKLIW+G PRS+R+SHRKVRD DGLII R++AL+
Sbjct: 231 AFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALF 290
Query: 265 FSSGDKQQLKFKITGHIWKDE 285
FS GD+++LK ++TG IWK++
Sbjct: 291 FSGGDRKELKLRVTGRIWKEQ 311
>AT4G27880.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr4:13883623-13884927 FORWARD LENGTH=327
Length = 327
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 214/265 (80%)
Query: 21 GKIGINSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIR 80
G VY+LL+CPVCT MYPPIHQC NGHTLCS CK+ +HN CPTC +LG+IR
Sbjct: 48 GPTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIR 107
Query: 81 CLALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPT 140
CLALEKVAESLELPC+ +LGC ++FPYY+ LKHE C FRPY CPYAGSEC ++GDIP
Sbjct: 108 CLALEKVAESLELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPF 167
Query: 141 LLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKA 200
L+ HL+ DHKVD+H G TFNHRYVKSNP EVENA WMLTVF+CF +YFCLHFEAF LG
Sbjct: 168 LVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMG 227
Query: 201 PVYIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPRSIRNSHRKVRDCQDGLIIPRH 260
PVY+AFLRF+G++ +A + ++LEVG + RKL W+G PRSIR+SHRKVRD DGLII R+
Sbjct: 228 PVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRN 287
Query: 261 LALYFSSGDKQQLKFKITGHIWKDE 285
+AL+FS GD+++LK ++TG IWK++
Sbjct: 288 MALFFSGGDRKELKLRVTGKIWKEQ 312
>AT5G53360.1 | Symbols: | TRAF-like superfamily protein |
chr5:21648485-21649269 FORWARD LENGTH=233
Length = 233
Score = 310 bits (795), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 82 LALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTL 141
+ALEKVAESLELPC+ +LGC +FPYY+ LKHE C FRPY CPYAGSEC+ +GDI L
Sbjct: 15 IALEKVAESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFL 74
Query: 142 LVHLKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKAP 201
+ HL+ DHKVD+H GCTFNHRYVKSNP EVENA WMLTVF CF +YFCLHFEAF LG AP
Sbjct: 75 VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAP 134
Query: 202 VYIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPRSIRNSHRKVRDCQDGLIIPRHL 261
VY+AFLRF+G++++A + ++LEVG + RK W+G PRS+R+SHRKVRD DGLII R++
Sbjct: 135 VYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNM 194
Query: 262 ALYFSSGDKQQLKFKITGHIWKDE 285
AL+FS GDK++LK ++TG IWK++
Sbjct: 195 ALFFSGGDKKELKLRVTGRIWKEQ 218
>AT3G13672.2 | Symbols: | TRAF-like superfamily protein |
chr3:4473541-4474343 REVERSE LENGTH=220
Length = 220
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 143/207 (69%), Gaps = 10/207 (4%)
Query: 86 KVAESLELPCRNQSLGCHDVFPYYTMLK----HEQNCRFRPYKCPYAGSECSVMGDIPTL 141
+V E L+ P + Y +L+ H +N + +PY CP++G++C V GDI L
Sbjct: 13 RVHELLDFPVHTNQISS---AIYEILLQCPNDHIENPKKKPYNCPHSGAKCDVTGDIQRL 69
Query: 142 LVHLKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKAP 201
L+HL+ DH V++ DG +F+HRYV +P + +A WMLT+ +C R FCL+FEAF L K P
Sbjct: 70 LLHLRNDHNVEMSDGRSFSHRYVHHDPKHLHHATWMLTLLDCCGRKFCLYFEAFHLRKTP 129
Query: 202 VYIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPRSIRNSHRKVRDCQDGLIIPRHL 261
+Y+AF++F+G++ EA F ++L+VG N RKL WQG+PRSIR+SH+ VRD QDGLII R L
Sbjct: 130 MYMAFMQFMGDEEEAMSFSYSLQVGGNGRKLTWQGVPRSIRDSHKTVRDSQDGLIITRKL 189
Query: 262 ALYFSSGDK---QQLKFKITGHIWKDE 285
AL+FS+ + ++LK K++G +W+++
Sbjct: 190 ALFFSTDNNTTDKELKLKVSGRVWREQ 216
>AT3G13672.1 | Symbols: | TRAF-like superfamily protein |
chr3:4473541-4474343 REVERSE LENGTH=216
Length = 216
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 132/175 (75%), Gaps = 3/175 (1%)
Query: 114 HEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVEN 173
H +N + +PY CP++G++C V GDI LL+HL+ DH V++ DG +F+HRYV +P + +
Sbjct: 38 HIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDHNVEMSDGRSFSHRYVHHDPKHLHH 97
Query: 174 AIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRKLI 233
A WMLT+ +C R FCL+FEAF L K P+Y+AF++F+G++ EA F ++L+VG N RKL
Sbjct: 98 ATWMLTLLDCCGRKFCLYFEAFHLRKTPMYMAFMQFMGDEEEAMSFSYSLQVGGNGRKLT 157
Query: 234 WQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDK---QQLKFKITGHIWKDE 285
WQG+PRSIR+SH+ VRD QDGLII R LAL+FS+ + ++LK K++G +W+++
Sbjct: 158 WQGVPRSIRDSHKTVRDSQDGLIITRKLALFFSTDNNTTDKELKLKVSGRVWREQ 212
>AT5G37870.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15073764-15074851 REVERSE LENGTH=281
Length = 281
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
D+L CP+C + P+ QC NGH CS+C + N CP C +G+IRC A+E+V ES+
Sbjct: 41 DILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVLESVL 100
Query: 93 LPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKV 151
+PCR LGC Y HE+ C F P CP G C+ G L H + H
Sbjct: 101 VPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQG--CNYTGSYKDLYEHYDLTHST 157
>AT5G37930.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15102239-15103651 REVERSE LENGTH=349
Length = 349
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
D+L CP+C + PI QC NGH C+ C + N CP+C +G +RC A+EKV E+
Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASR 168
Query: 93 LPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVD 152
+ C N GC + Y HEQ C F P CP +C G L H++ +HK D
Sbjct: 169 VSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPIL--DCHYTGYYKDLNNHVRAEHKDD 226
Query: 153 V 153
+
Sbjct: 227 L 227
>AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15090512-15091822 REVERSE LENGTH=286
Length = 286
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 19/249 (7%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
++L CP+C PI QC NGH CS+C ++N CP C +G+ RC A+E V ES+
Sbjct: 47 EILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESIL 106
Query: 93 LPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVD 152
+PC N LGC Y L HE+ C F CP +C+ L H +I H ++
Sbjct: 107 IPCPNAKLGCKKNVSYGKELTHEKECMFSHCACP--ALDCNYTSSYKDLYTHYRITH-ME 163
Query: 153 VHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKAP--VYIAFLRFL 210
++ TF S + I + T + H A + P VY+
Sbjct: 164 INQINTFICDIPLSVRMNISKKILIRT------EHLTNHLFAVQCFREPYGVYVTVSCIA 217
Query: 211 GEDNEASKFRFTLEVGANSRKLIWQG--IPRSIRNSHRKVRDCQDGLIIPRHLALYFSSG 268
E S++ + L + +I+Q + R ++ S + + ++ ++IP L G
Sbjct: 218 PSSPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQ--ENFMLIPNSLL----RG 271
Query: 269 DKQQLKFKI 277
D +++ +
Sbjct: 272 DVLEMRISV 280
>AT1G66620.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24852806-24854044 REVERSE LENGTH=313
Length = 313
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
DLL CP+C + + PI QC NGH CS+C + N CP+C +GN R +E+V E++
Sbjct: 40 DLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVM 99
Query: 93 LPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDH 149
+ C N GC + F Y L HE++CRF CP C+ G L H ++H
Sbjct: 100 VTCPNVKHGCTEKFSYGKELIHEKDCRFALCYCP--APNCNYSGVYKDLYSHFYVNH 154
>AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15096210-15097318 REVERSE LENGTH=276
Length = 276
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
D+L CP+C + PI QC NGH C +C + N CP C +G+ R A+E V ES+
Sbjct: 34 DILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAMESVLESIL 93
Query: 93 LPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVD 152
+PC N GC F Y HE+ C F CP S C G L H K+ H +
Sbjct: 94 IPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCP--SSVCDYTGSYKDLYAHYKLTHSTN 151
Query: 153 V 153
+
Sbjct: 152 I 152
>AT5G62800.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:25218663-25219967 FORWARD LENGTH=348
Length = 348
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 24/214 (11%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDL--GNIRCLALEKVAES 90
D+L CPVC + P QC +GH +C+ C + N CP CDL GN RC A+E+V ES
Sbjct: 39 DVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLES 98
Query: 91 LELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHK 150
+PC+N GC Y + HE+ C + CP EC+ G + H H
Sbjct: 99 AFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCP--NLECNYTGSYNIIYGHFMRRHL 156
Query: 151 VD---VHDGCTFNHRYVKSNPHEVENAIW-----MLTVFNCFERYFCLHFEAFLLGKAPV 202
+ V ++ V N E + +W +L V CF+ + V
Sbjct: 157 YNSTIVSSKWGYSTVDVLINIKEKVSVLWESRQKLLFVVQCFKE------------RHGV 204
Query: 203 YIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQG 236
Y+ R +E KF + L + + ++
Sbjct: 205 YVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYES 238
>AT1G66660.2 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24862056-24863332 REVERSE LENGTH=348
Length = 348
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
D+L CP C + PI+QC NGH CS+C ++ C C C++G+IRC A+EKV E+
Sbjct: 102 DVLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASI 161
Query: 93 LPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVH 144
+PC N GC + Y HE+ C+F CP S C+ + L H
Sbjct: 162 VPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPV--SNCNYVSSYSNLKSH 211
>AT1G66630.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24855479-24856714 REVERSE LENGTH=303
Length = 303
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 7 NINSTVTKSRVALDGKIGINSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMH 66
N+ T + S VA + DLL CP+C + + PI+QC NGH CS+C +
Sbjct: 25 NVGGTASGSEVARSATL------LELDLLDCPICYHKLGAPIYQCDNGHIACSSCCKKVK 78
Query: 67 NCCPTCFCDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPY--YTMLKHEQNCRFRPYK 124
CP C +G R LEK+ E++ + C N GC + PY + HE+ C F
Sbjct: 79 YKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCY 138
Query: 125 CPYAGSECSVMGDIPTLLVHLKIDHKVD 152
CP EC G L H +HK D
Sbjct: 139 CP--EPECKYTGVYTDLYRHYHAEHKTD 164
>AT1G66650.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24860113-24861821 REVERSE LENGTH=329
Length = 329
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 6 ANINSTVTKSRVALDGKIGINSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISM 65
++ T K RV+ + + + N +L+CP C + + PI QC NGH C C I +
Sbjct: 59 GDVLRTCRKRRVSSPKSVTLPNSN----VLECPNCFDPLKKPIFQCNNGHLACFLCCIKL 114
Query: 66 HNCCPTCFCDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPYYTMLK-HEQNCRFRPYK 124
C C +G++RC A+EKV ++ + C N GC Y L+ HE+ C F P
Sbjct: 115 KKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCS 174
Query: 125 CPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTF 159
CP +C+ +G L+ H + HKV D +F
Sbjct: 175 CPI--KDCNYIGFYKDLINHFRATHKVSPGDINSF 207
>AT1G66610.2 | Symbols: | TRAF-like superfamily protein |
chr1:24850221-24851450 REVERSE LENGTH=237
Length = 237
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 18 ALDGKIGINSKNDVY---------DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNC 68
++D + G N DV DLL CPVC+ + I QC NGH CS+C I +
Sbjct: 133 SIDEENGENGGRDVVVPSGTLSQLDLLDCPVCSKALKISIFQCDNGHVACSSCCIELRYK 192
Query: 69 CPTCFCDLGNIRCLALEKVAESLELPCRN 97
CP+C +GN RC+ +EKV +++ +PC+
Sbjct: 193 CPSCSLPIGNYRCIIMEKVVKAIIVPCQT 221
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
DLL CP+C N + PI QC GH CS+C ++ N CP C +GN R +E+V E+
Sbjct: 52 DLLDCPICCNALTIPIFQCDKGHIACSSCCTNVSNKCPYCSLAIGNYRSRIMERVVEAFI 111
Query: 93 LPC 95
+ C
Sbjct: 112 VRC 114
>AT1G66610.1 | Symbols: | TRAF-like superfamily protein |
chr1:24849716-24851450 REVERSE LENGTH=366
Length = 366
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 33 DLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLE 92
DLL CP+C N + PI QC GH CS+C ++ N CP C +GN R +E+V E+
Sbjct: 52 DLLDCPICCNALTIPIFQCDKGHIACSSCCTNVSNKCPYCSLAIGNYRSRIMERVVEAFI 111
Query: 93 LPC 95
+ C
Sbjct: 112 VRC 114
>AT1G66660.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24862056-24863028 REVERSE LENGTH=224
Length = 224
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 74 CDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECS 133
C++G+IRC A+EKV E+ +PC N GC + Y HE+ C+F CP S C+
Sbjct: 19 CNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPV--SNCN 76
Query: 134 VMGDIPTLLVH 144
+ L H
Sbjct: 77 YVSSYSNLKSH 87