Miyakogusa Predicted Gene

Lj0g3v0008779.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0008779.1 tr|B9HHY4|B9HHY4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564111 PE=4
SV=1,31.17,0.000000000002,DUF565,Uncharacterised protein family Ycf20;
seg,NULL,CUFF.511.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56830.3 | Symbols:  | Protein of unknown function (DUF565) |...   107   6e-24
AT3G56830.2 | Symbols:  | Protein of unknown function (DUF565) |...   107   6e-24
AT3G56830.1 | Symbols:  | Protein of unknown function (DUF565) |...   106   7e-24
AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF56...    74   7e-14

>AT3G56830.3 | Symbols:  | Protein of unknown function (DUF565) |
           chr3:21042781-21043840 REVERSE LENGTH=188
          Length = 188

 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 81/140 (57%), Gaps = 12/140 (8%)

Query: 34  SAFFYKTTFGQKQ------CAPCFSVIFAQPCLMINLRKMTW-----SVRXXXXXXXXXX 82
           S F  K +F  K       C+ C  +  AQP L+ + R+M+W     SV           
Sbjct: 14  SKFLPKRSFRDKGALSLAICSLCHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGS 73

Query: 83  XXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGD 142
                + G  R+IK IQ  R+KL  K+QE+KK+LP KL F L GFY ATAFST IGQTGD
Sbjct: 74  SSNNSSRG-LRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGD 132

Query: 143 WDILSAALAVFVVEGIGALI 162
           WD+LSA LAV VVE IGAL+
Sbjct: 133 WDVLSAGLAVLVVECIGALM 152


>AT3G56830.2 | Symbols:  | Protein of unknown function (DUF565) |
           chr3:21042781-21043840 REVERSE LENGTH=188
          Length = 188

 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 81/140 (57%), Gaps = 12/140 (8%)

Query: 34  SAFFYKTTFGQKQ------CAPCFSVIFAQPCLMINLRKMTW-----SVRXXXXXXXXXX 82
           S F  K +F  K       C+ C  +  AQP L+ + R+M+W     SV           
Sbjct: 14  SKFLPKRSFRDKGALSLAICSLCHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGS 73

Query: 83  XXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGD 142
                + G  R+IK IQ  R+KL  K+QE+KK+LP KL F L GFY ATAFST IGQTGD
Sbjct: 74  SSNNSSRG-LRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGD 132

Query: 143 WDILSAALAVFVVEGIGALI 162
           WD+LSA LAV VVE IGAL+
Sbjct: 133 WDVLSAGLAVLVVECIGALM 152


>AT3G56830.1 | Symbols:  | Protein of unknown function (DUF565) |
           chr3:21042755-21043840 REVERSE LENGTH=230
          Length = 230

 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 81/140 (57%), Gaps = 12/140 (8%)

Query: 34  SAFFYKTTFGQKQ------CAPCFSVIFAQPCLMINLRKMTW-----SVRXXXXXXXXXX 82
           S F  K +F  K       C+ C  +  AQP L+ + R+M+W     SV           
Sbjct: 14  SKFLPKRSFRDKGALSLAICSLCHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGS 73

Query: 83  XXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGD 142
                + G  R+IK IQ  R+KL  K+QE+KK+LP KL F L GFY ATAFST IGQTGD
Sbjct: 74  SSNNSSRG-LRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGD 132

Query: 143 WDILSAALAVFVVEGIGALI 162
           WD+LSA LAV VVE IGAL+
Sbjct: 133 WDVLSAGLAVLVVECIGALM 152


>AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF565)
           | chr1:24297669-24298374 REVERSE LENGTH=197
          Length = 197

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ ++      +L  K+   +KN PMK+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 85  GSTRLGRIAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 144

Query: 150 LAVFVVEGIGALINPFPAN 168
           + V  +EGIG L+   P++
Sbjct: 145 IVVAAIEGIGMLMYKKPSS 163