Miyakogusa Predicted Gene

Lj0g3v0007899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0007899.1 Non Chatacterized Hit- tr|K4D356|K4D356_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,36.61,6e-18,seg,NULL,CUFF.444.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11690.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   2e-09
AT2G27180.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    59   2e-09

>AT3G11690.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast
           hits to 84 proteins in 12 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr3:3695484-3696242 FORWARD LENGTH=252
          Length = 252

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 15/130 (11%)

Query: 49  PFGLANLMYLAIYKVPASLCQRALKKTKQRRRRHH-----LPTAGE----EVVFPQTRRC 99
           P GL NL+ LAIYKVP  +C+RA++  ++++   +     LPT G+    + VF  +   
Sbjct: 73  PCGLVNLLVLAIYKVPKGICRRAIRSRRRKQLVKNGILPPLPTDGKNERMQRVFQNSEFA 132

Query: 100 TCACCDDFSARVYPACGSLD------DVAGMMGSGLEEKEDNKELMELEKEMWDRFYSTG 153
                 D  +        LD       VA    +  E  ED++ ++ LEKEMW+RFY  G
Sbjct: 133 IHPLDSDDVSDDEDDDNFLDLKYIGKSVATGFTTEEETDEDDEAVLALEKEMWNRFYGAG 192

Query: 154 FWRSPSQRDD 163
           FWRSPSQR+ 
Sbjct: 193 FWRSPSQRES 202


>AT2G27180.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in
           14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:11620473-11620970 FORWARD
           LENGTH=165
          Length = 165

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 36/127 (28%)

Query: 49  PFGLANLMYLAIYKVPASLCQRA---LKKTKQRRRRHHLPTAG-----EEVVFPQTRRCT 100
           P  + NLM LA+YKVPA++C++A    K+ +  R+RH L  +      E  V  +     
Sbjct: 56  PCAVVNLMVLAVYKVPAAVCKKAWRRSKRRRFTRKRHGLLASATAEGSESTVHARLNE-- 113

Query: 101 CACCDDFSAR-VYPAC----GSLDDVAGMMGSGLEEKEDNKELMELEKEMWDRFYSTGFW 155
               +D +A  V+  C    G L+DV                 + LE EM DRFY  GFW
Sbjct: 114 ----EDLTAEIVFEECHVSGGELNDV-----------------VRLENEMLDRFYGAGFW 152

Query: 156 RSPSQRD 162
           RSPSQ+D
Sbjct: 153 RSPSQKD 159