Miyakogusa Predicted Gene

Lj0g3v0005999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005999.1 Non Chatacterized Hit- tr|I1GRT8|I1GRT8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,46.46,8e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.353.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26770.2 | Symbols:  | plectin-related | chr2:11404257-114077...   162   5e-41
AT2G26770.1 | Symbols:  | plectin-related | chr2:11404257-114077...   162   5e-41
AT2G40820.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    91   1e-19
AT3G56480.1 | Symbols:  | myosin heavy chain-related | chr3:2093...    84   2e-17

>AT2G26770.2 | Symbols:  | plectin-related | chr2:11404257-11407743
           REVERSE LENGTH=496
          Length = 496

 Score =  162 bits (410), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 92/124 (74%)

Query: 1   MTRMTRDFADTMQREAMPVVSADVIFASLRFPNYKIGANNQIMETKGDPKVLTMKEVVAR 60
           MTR+TRDF D++QR+ +P VSADV FAS RFPNY+IGAN+QI + K DPKV++MKEVVAR
Sbjct: 1   MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLASKFEKGXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALECLK 120
           ETAQL++QQKRLSVRDLA KFEKG                     HVLLKKLRDALE L+
Sbjct: 61  ETAQLMDQQKRLSVRDLAHKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query: 121 GRVG 124
           GRV 
Sbjct: 121 GRVA 124


>AT2G26770.1 | Symbols:  | plectin-related | chr2:11404257-11407743
           REVERSE LENGTH=496
          Length = 496

 Score =  162 bits (410), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 92/124 (74%)

Query: 1   MTRMTRDFADTMQREAMPVVSADVIFASLRFPNYKIGANNQIMETKGDPKVLTMKEVVAR 60
           MTR+TRDF D++QR+ +P VSADV FAS RFPNY+IGAN+QI + K DPKV++MKEVVAR
Sbjct: 1   MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLASKFEKGXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALECLK 120
           ETAQL++QQKRLSVRDLA KFEKG                     HVLLKKLRDALE L+
Sbjct: 61  ETAQLMDQQKRLSVRDLAHKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query: 121 GRVG 124
           GRV 
Sbjct: 121 GRVA 124


>AT2G40820.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 21 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: myosin heavy chain-related
           (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins
           in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26;
           Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes
           - 45 (source: NCBI BLink). | chr2:17036768-17039474
           REVERSE LENGTH=492
          Length = 492

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 20  VSADVIFASLRFPNYKIGANNQIM-ETKGDPKVLTMKEVVARETAQLLEQQKRLSVRDLA 78
           +SADV FAS  FP YK+G ++QI+ E   D KV ++K+VV +ET  L +Q K+LSVRDLA
Sbjct: 22  ISADVSFASNHFPTYKLGPDDQIVDEPDEDDKVPSVKDVVGKETGDLSDQHKKLSVRDLA 81

Query: 79  SKFEKGXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALECLKGRV 123
            KF+K                      HV+LKKLRDALE ++GR+
Sbjct: 82  CKFDKNLAAASKLVDEAKLNDVTSLEGHVMLKKLRDALETMRGRM 126


>AT3G56480.1 | Symbols:  | myosin heavy chain-related |
           chr3:20936480-20938986 REVERSE LENGTH=490
          Length = 490

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 26  FASLRFPNYKIGANNQIME-TKGDPKVLTMKEVVARETAQLLEQQKRLSVRDLASKFEKG 84
           FAS  FP YK+G +NQI+E  K D K  ++KE V +E+  L +Q KRLSVRDLASKF+K 
Sbjct: 25  FASDHFPTYKLGPDNQIVEEPKEDEKGPSVKETVEKESELLSDQHKRLSVRDLASKFDKN 84

Query: 85  XXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALECLKGRV 123
                                HV+LKKLRDALE ++GR 
Sbjct: 85  LAAAVSLANEAKLREVASLEGHVMLKKLRDALEYMRGRT 123