Miyakogusa Predicted Gene

Lj0g3v0005939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005939.1 Non Chatacterized Hit- tr|I1NLF8|I1NLF8_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,51.75,7e-18,seg,NULL,CUFF.355.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44820.1 | Symbols:  | unknown protein; Has 70 Blast hits to ...   105   2e-23
AT2G44820.2 | Symbols:  | unknown protein; Has 70 Blast hits to ...   105   2e-23

>AT2G44820.1 | Symbols:  | unknown protein; Has 70 Blast hits to 70
           proteins in 25 species: Archae - 0; Bacteria - 0;
           Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other
           Eukaryotes - 10 (source: NCBI BLink). |
           chr2:18484690-18485517 FORWARD LENGTH=194
          Length = 194

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 23  NMLEQQMDIRSIMKDVQNFSYSHMAWKERKKIENNKVVSLGGKPPKNQRLPLSVARPXXX 82
           + ++Q +  ++IMKDV  F  SHM WK++K +E+ KV +LGGK  K  RLPLSVAR    
Sbjct: 17  STIDQNLSFKNIMKDVALFGSSHMTWKDKKALEDKKVTALGGKAQKMHRLPLSVARVQMK 76

Query: 83  XXXXXXXXXXXXNMILGRFGGKLGGSNKKSVGKHKPENRGLKASEGRFRNGILDVKHLLN 142
                       N+ILGRFGG    S K +  K  PE R LK++ G F+ G+LDVKHLL 
Sbjct: 77  KQKDREEKMLEQNVILGRFGGGGSSSRKPAERKRTPEERVLKSTGGIFKGGVLDVKHLLR 136

Query: 143 SAGPSKNHD 151
           S GPS + D
Sbjct: 137 S-GPSSSSD 144


>AT2G44820.2 | Symbols:  | unknown protein; Has 70 Blast hits to 70
           proteins in 25 species: Archae - 0; Bacteria - 0;
           Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other
           Eukaryotes - 10 (source: NCBI BLink). |
           chr2:18484690-18485517 FORWARD LENGTH=194
          Length = 194

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 23  NMLEQQMDIRSIMKDVQNFSYSHMAWKERKKIENNKVVSLGGKPPKNQRLPLSVARPXXX 82
           + ++Q +  ++IMKDV  F  SHM WK++K +E+ KV +LGGK  K  RLPLSVAR    
Sbjct: 17  STIDQNLSFKNIMKDVALFGSSHMTWKDKKALEDKKVTALGGKAQKMHRLPLSVARVQMK 76

Query: 83  XXXXXXXXXXXXNMILGRFGGKLGGSNKKSVGKHKPENRGLKASEGRFRNGILDVKHLLN 142
                       N+ILGRFGG    S K +  K  PE R LK++ G F+ G+LDVKHLL 
Sbjct: 77  KQKDREEKMLEQNVILGRFGGGGSSSRKPAERKRTPEERVLKSTGGIFKGGVLDVKHLLR 136

Query: 143 SAGPSKNHD 151
           S GPS + D
Sbjct: 137 S-GPSSSSD 144