Miyakogusa Predicted Gene

Lj0g3v0005909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005909.1 Non Chatacterized Hit- tr|Q2PF06|Q2PF06_TRIPR
Putative hydroxymethylglutaryl-CoA lyase (Fragment)
OS,89.02,1e-34,HMGL-like,Pyruvate carboxyltransferase; Aldolase,NULL;
no description,Aldolase-type TIM barrel; HYDR,CUFF.346.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26800.2 | Symbols:  | Aldolase superfamily protein | chr2:11...   143   2e-35
AT2G26800.1 | Symbols:  | Aldolase superfamily protein | chr2:11...   143   2e-35

>AT2G26800.2 | Symbols:  | Aldolase superfamily protein |
           chr2:11429192-11432290 REVERSE LENGTH=468
          Length = 468

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 78/83 (93%), Gaps = 1/83 (1%)

Query: 1   MGISAVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLLSAGDFISKHL 60
           MGIS VDSS++GLGGCPYAKGASGNVATEDVVYMLNGLGV TNVDLGKL++AGDFISKHL
Sbjct: 386 MGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHL 445

Query: 61  GRPSGSKTAVALG-RVTSDASKI 82
           GRP+GSK AVAL  R+T+DASKI
Sbjct: 446 GRPNGSKAAVALNRRITADASKI 468


>AT2G26800.1 | Symbols:  | Aldolase superfamily protein |
           chr2:11429192-11432185 REVERSE LENGTH=433
          Length = 433

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 78/83 (93%), Gaps = 1/83 (1%)

Query: 1   MGISAVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLLSAGDFISKHL 60
           MGIS VDSS++GLGGCPYAKGASGNVATEDVVYMLNGLGV TNVDLGKL++AGDFISKHL
Sbjct: 351 MGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHL 410

Query: 61  GRPSGSKTAVALG-RVTSDASKI 82
           GRP+GSK AVAL  R+T+DASKI
Sbjct: 411 GRPNGSKAAVALNRRITADASKI 433