Miyakogusa Predicted Gene

Lj0g3v0005849.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005849.1 Non Chatacterized Hit- tr|I0ZAF2|I0ZAF2_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,48.89,0.0000000000001,seg,NULL,CUFF.331.1
         (268 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26840.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   243   9e-65
AT2G26840.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   219   2e-57
AT3G43910.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   115   4e-26

>AT2G26840.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G43910.1); Has 835 Blast hits to 835
           proteins in 26 species: Archae - 0; Bacteria - 25;
           Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 2; Other
           Eukaryotes - 768 (source: NCBI BLink). |
           chr2:11447346-11448871 REVERSE LENGTH=273
          Length = 273

 Score =  243 bits (620), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 164/238 (68%), Gaps = 15/238 (6%)

Query: 36  FIHIRAFCASSSSPIQTKVRRK---------VKASESDAQLKENWLASLSYPNRLNEEQD 86
           F  +R F + S S      RR+          KA ++ A +KE WL SLS     ++++D
Sbjct: 18  FSKVRPFLSHSPSFTAPFTRRRSFPFSALPTTKAIDA-ALMKEKWLDSLSL---TSQDED 73

Query: 87  LTRKNDASEWILGIDPDVSGAVALLKTHD--SVCSPQVFDSPHVQILVGKRTRRRLDAKS 144
            T +N  S  I+GIDPD+SGA+ALLK     S    QV+D+PH+ +LVGKR R+RLDAKS
Sbjct: 74  TTPENAESSCIIGIDPDLSGALALLKFDHLGSSSFAQVYDTPHIPVLVGKRVRKRLDAKS 133

Query: 145 VVELVRSFDAPLGTTAYIEQSLPFPQDGKQGWWSGGFGYGLWIGILVASGFSVVPVPSFT 204
           +V+L++S D P G+  YIEQS PFP+DGKQGW+SGGFGYGLWIG LVASGF V+PV +  
Sbjct: 134 IVQLIQSLDVPSGSRVYIEQSNPFPKDGKQGWYSGGFGYGLWIGTLVASGFCVIPVSASL 193

Query: 205 WKAKFELSGSRISKDDSRRVAATLFPSVSSLLLRKKDHGRAEALLIAAYGKDQKKNSL 262
           WK  F+L+    +KDDSRRVAA LFPS+SS L RKKDHGRAEALLIAAYG+  K   L
Sbjct: 194 WKRHFQLASGSCTKDDSRRVAAELFPSLSSQLKRKKDHGRAEALLIAAYGEALKTEKL 251


>AT2G26840.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G43910.1). | chr2:11447346-11448871
           REVERSE LENGTH=326
          Length = 326

 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/291 (44%), Positives = 166/291 (57%), Gaps = 68/291 (23%)

Query: 36  FIHIRAFCASSSSPIQTKVRRK---------VKASESDAQLKENWLASLSYPNRLNEEQD 86
           F  +R F + S S      RR+          KA ++ A +KE WL SLS  +   +++D
Sbjct: 18  FSKVRPFLSHSPSFTAPFTRRRSFPFSALPTTKAIDA-ALMKEKWLDSLSLTS---QDED 73

Query: 87  LTRKNDASEWILGIDPDVSGA------------------------------VALLKTHDS 116
            T +N  S  I+GIDPD+SGA                              V +L+ + S
Sbjct: 74  TTPENAESSCIIGIDPDLSGALALLKFDHLGSSSFAQNQTYYQSWLCFEHLVLMLRNYLS 133

Query: 117 ------VCSP-------------------QVFDSPHVQILVGKRTRRRLDAKSVVELVRS 151
                 +C                     +V+D+PH+ +LVGKR R+RLDAKS+V+L++S
Sbjct: 134 LQGSYVICEKNRECEGFCESFMLLCLVQFEVYDTPHIPVLVGKRVRKRLDAKSIVQLIQS 193

Query: 152 FDAPLGTTAYIEQSLPFPQDGKQGWWSGGFGYGLWIGILVASGFSVVPVPSFTWKAKFEL 211
            D P G+  YIEQS PFP+DGKQGW+SGGFGYGLWIG LVASGF V+PV +  WK  F+L
Sbjct: 194 LDVPSGSRVYIEQSNPFPKDGKQGWYSGGFGYGLWIGTLVASGFCVIPVSASLWKRHFQL 253

Query: 212 SGSRISKDDSRRVAATLFPSVSSLLLRKKDHGRAEALLIAAYGKDQKKNSL 262
           +    +KDDSRRVAA LFPS+SS L RKKDHGRAEALLIAAYG+  K   L
Sbjct: 254 ASGSCTKDDSRRVAAELFPSLSSQLKRKKDHGRAEALLIAAYGEALKTEKL 304


>AT3G43910.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G26840.1); Has 680 Blast hits to 680 proteins
           in 17 species: Archae - 0; Bacteria - 8; Metazoa - 0;
           Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
           635 (source: NCBI BLink). | chr3:15751387-15752689
           FORWARD LENGTH=195
          Length = 195

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 8/170 (4%)

Query: 86  DLTRKNDASEWILGIDPDVSGAVALLKTHD-SVCSPQVFDSPHVQILVGKRTRRRLDAKS 144
           ++ ++N    WI+GIDP++SGA+A+LK  D   C  QV+D+P ++++V     R  + KS
Sbjct: 18  EMIQENFKPHWIIGIDPNLSGALAVLKFDDKGSCFAQVYDTPQLEVVVQNIRTRSFNEKS 77

Query: 145 VVELVRSFDAPLGTTAYIEQSLPFPQDGKQGWWSGGFGYGLWIGILVASGFSVVPVPSFT 204
           ++EL+RS D P GT A++ + +  P++     ++ G G GLW   L+ S  SV+ V   T
Sbjct: 78  MLELIRSLDVPSGTKAFVAKYI-HPENAITA-YNDGLGCGLW--TLLTSSISVIYVTPST 133

Query: 205 WKAKFELSGSRISKDDSRRVAATLFPSVSSLLLRKKDHGRAEALLIAAYG 254
           W   F L  S  S D  R++A  +FPS+  L  +  D+ RA ALLIAAYG
Sbjct: 134 WDKHFNL--SIWSLDGGRKLALEMFPSL-KLTTKIDDNARANALLIAAYG 180