Miyakogusa Predicted Gene

Lj0g3v0005539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005539.1 Non Chatacterized Hit- tr|I1M4P0|I1M4P0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,97.83,3e-18,VACUOLAR
PROTON ATPASE,NULL; VACUOLAR PROTON ATPASES,ATPase, V0/A0 complex
subunit a,CUFF.324.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28520.1 | Symbols: VHA-A1 | vacuolar proton ATPase A1 | chr2...    81   1e-16
AT4G39080.1 | Symbols: VHA-A3 | vacuolar proton ATPase A3 | chr4...    57   2e-09
AT2G21410.1 | Symbols: VHA-A2 | vacuolar proton ATPase A2 | chr2...    56   6e-09

>AT2G28520.1 | Symbols: VHA-A1 | vacuolar proton ATPase A1 |
          chr2:12210026-12215532 FORWARD LENGTH=817
          Length = 817

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 7  MDQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQF 52
          M++F+D LP MDLMRSEKMT VQLIIP ESAHR+I+YLGELGLLQF
Sbjct: 1  MEEFLDKLPQMDLMRSEKMTLVQLIIPVESAHRSITYLGELGLLQF 46


>AT4G39080.1 | Symbols: VHA-A3 | vacuolar proton ATPase A3 |
          chr4:18209513-18214752 FORWARD LENGTH=821
          Length = 821

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 17 MDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQF 52
          MDLMRSE M  VQLI+P ESAH  +SYLG+LGL+QF
Sbjct: 14 MDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQF 49


>AT2G21410.1 | Symbols: VHA-A2 | vacuolar proton ATPase A2 |
          chr2:9162703-9168141 FORWARD LENGTH=821
          Length = 821

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 17 MDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQF 52
          MDLMRSE M  VQ+I+P ESAH  +SYLG+LGL+QF
Sbjct: 15 MDLMRSEPMQLVQVIVPMESAHLTVSYLGDLGLVQF 50