Miyakogusa Predicted Gene
- Lj0g3v0004669.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0004669.2 Non Chatacterized Hit- tr|I1MS71|I1MS71_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7049
PE=,80.44,0,SNF2_N,SNF2-related; HIRAN,HIP116, Rad5p N-terminal;
P-loop containing nucleoside triphosphate hydro,CUFF.307.2
(720 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 972 0.0
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 602 e-172
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 229 7e-60
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 225 9e-59
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 225 1e-58
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 224 2e-58
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 224 2e-58
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 215 8e-56
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 213 4e-55
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 196 5e-50
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 184 2e-46
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 166 5e-41
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 160 3e-39
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 159 8e-39
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 108 2e-23
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 108 2e-23
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 108 2e-23
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 106 5e-23
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 106 5e-23
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 103 3e-22
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 103 3e-22
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 98 2e-20
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 97 5e-20
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 96 1e-19
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 96 1e-19
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 96 1e-19
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 94 3e-19
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 92 1e-18
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 92 1e-18
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 89 9e-18
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 89 1e-17
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 88 2e-17
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 87 4e-17
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 87 5e-17
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 86 8e-17
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 86 9e-17
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 86 1e-16
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 80 4e-15
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 78 2e-14
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 77 5e-14
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 74 3e-13
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 72 1e-12
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 70 4e-12
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 67 4e-11
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 67 5e-11
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 66 1e-10
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 54 4e-07
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 54 4e-07
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 54 4e-07
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 53 8e-07
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/754 (64%), Positives = 581/754 (77%), Gaps = 45/754 (5%)
Query: 1 MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQTHTPKSKPTRST 60
MG+KVSD +STVRS+VG +++DM+IIRALHMA +D TAAINIIFDT + +KP +T
Sbjct: 1 MGTKVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSF---AKPDVAT 57
Query: 61 ATKPRRVSPPKSTPNAVAAIT------------------DIDGGASSSCPVGPDDWWFVG 102
T P + K + + T ++GG S V ++WWFVG
Sbjct: 58 PT-PSGSNGGKRVDSGLKGCTFGDSGSVGANHRVEEENESVNGGGEES--VSGNEWWFVG 114
Query: 103 CGEVAGLSTCKGRTVKSGDAVVFRFPNKK---PSASPSTAKGFGR---AAATCTEIVRFS 156
C E+AGLSTCKGR +KSGD +VF FP+ K P +P +GFGR A ++IVRFS
Sbjct: 115 CSELAGLSTCKGRKLKSGDELVFTFPHSKGLKPETTPG-KRGFGRGRPALRGASDIVRFS 173
Query: 157 TEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFV 216
T+ +GEIGRIPNEWARCLLPLVRD K+++EG CK AP+ L IMDTI LSVSV+IN SMF
Sbjct: 174 TKDSGEIGRIPNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQ 233
Query: 217 KRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFCTNKRPFSQK------ 270
K S K A+++ +ES+FHPLP LFRLLGL PFKKAE TP DF + KRP S K
Sbjct: 234 KHSATSFKTASNTAEESMFHPLPNLFRLLGLIPFKKAEFTPEDFYSKKRPLSSKDGSAIP 293
Query: 271 ---VTLPHAKTERPSQNGDENENDDSISEVDLENIVGVGSGSELEEMDPPGNLLCELRPY 327
+ L K NGDENE IS+ DL+NIVGVG S L+EM+ P LLCELRPY
Sbjct: 294 TSLLQLNKVKNMNQDANGDENEQ--CISDGDLDNIVGVGDSSGLKEMETPHTLLCELRPY 351
Query: 328 QKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQM 387
QKQAL+WM Q+EKG DE T LHPCW+AY LADKRELV+YLN+F+G+ATI FPSTLQM
Sbjct: 352 QKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQM 411
Query: 388 AKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKK 447
A+GGILADAMGLGKT+MTISLL+AHS + S G + ++ +S +VD+ + P K
Sbjct: 412 ARGGILADAMGLGKTVMTISLLLAHSWKAASTG--FLCPNYEGDKVISSSVDDLTSPPVK 469
Query: 448 ASKFTGFDK-IIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPR 506
A+KF GFDK +++QK+ L +G +LI+CPMTLLGQWK EIE H PGSLS+YVHYGQSRP+
Sbjct: 470 ATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPK 529
Query: 507 DAKSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAA 566
DAK L+QSDVVITTYGVL SEFS EN+ + G++++RWFR+VLDEAHTIK+SKSQ+S+AA
Sbjct: 530 DAKLLSQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAA 589
Query: 567 AALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLV 626
AAL+AD+RWCLTGTPIQNNLED+YSLLRFLRIEPWG WAWWN+L+QKPFE GDERGLKLV
Sbjct: 590 AALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLV 649
Query: 627 QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQF 686
QSILKPIMLRRTK+STDREG+PILVLPPAD ++IYCE +++E+DFY+ALFKRSKVKFDQF
Sbjct: 650 QSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQF 709
Query: 687 VEQGRVLHNYASILELLLRLRQCCDHPFLVMSRG 720
VEQG+VLHNYASILELLLRLRQCCDHPFLVMSRG
Sbjct: 710 VEQGKVLHNYASILELLLRLRQCCDHPFLVMSRG 743
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust.
Identities = 308/632 (48%), Positives = 404/632 (63%), Gaps = 42/632 (6%)
Query: 97 DWWFVGCGEVAGLSTCKGRTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFS 156
DW+ VG V ST KGR ++ + V F F + P+ IVRFS
Sbjct: 395 DWYLVGRSLVTATSTSKGRKLEDNEIVNFTFSSVAKWKVPN--------------IVRFS 440
Query: 157 TEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFV 216
T+ GEIGR+P EW+ + L+R KVK+ G C AP L +M I L VS +I+ S+F
Sbjct: 441 TKRCGEIGRLPMEWSNWAVSLLRSGKVKMLGRCVAAPPFLTMMQEIMLYVSFYIHSSIFT 500
Query: 217 KRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFCTNKRPFS-------Q 269
+ + + +S ES HPL LF+ L + P++KAE TP + + KR + +
Sbjct: 501 DVSKSTWRIGSSPNLESTLHPLLQLFKHLTIKPYQKAEFTPEELNSRKRSLNLEDDYDER 560
Query: 270 KVTLPHAKTERPSQNG-DENENDDSISEVDLENIVGVGSGSELEEMDPPGNLLCELRPYQ 328
L AK + Q ++N++++ E + +VG LEEM+ P L C LRPYQ
Sbjct: 561 AALLAIAKRRKGCQQSLEQNKDEEEAPESYMNRVVGAADSYNLEEMEAPSTLTCNLRPYQ 620
Query: 329 KQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQMA 388
KQALYWM + EKG V++ TLHPCW+AYR+ D+R IYLN FSGEATI+FP+ QMA
Sbjct: 621 KQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGEATIQFPTATQMA 680
Query: 389 KGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
+GGILADAMGLGKT+MTI+L++A GRG + +V+ N I
Sbjct: 681 RGGILADAMGLGKTVMTIALILARPGRGNPENEDVLV------ADVNADKRNRKEIHMAL 734
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+ +K K G +LIICPM LL QWK E+ETH P ++S+ V+YG R DA
Sbjct: 735 T-------TVKAK-----GGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDA 782
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
K++A DVV+TTYGVL S + + A + I W+R+VLDEAHTIKS K+Q + A
Sbjct: 783 KAIASHDVVLTTYGVLTSAYKQDMA--NSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFE 840
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQS 628
L + RWCLTGTP+QN LED+YSLL FL +EPW +WAWW++LIQKP+E GD RGLKL+++
Sbjct: 841 LSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKA 900
Query: 629 ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVE 688
IL+P+MLRRTK + D+EG IL LPP D+Q+I CE ++AE+DFY ALFKRSKV+FDQFV
Sbjct: 901 ILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVA 960
Query: 689 QGRVLHNYASILELLLRLRQCCDHPFLVMSRG 720
QG+VLHNYA+ILELLLRLRQCC+HPFLVMSR
Sbjct: 961 QGKVLHNYANILELLLRLRQCCNHPFLVMSRA 992
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 229 bits (583), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 212/418 (50%), Gaps = 82/418 (19%)
Query: 313 EMDPP-GNLLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLN 371
E PP G L L +Q+ AL WM Q E T+ +PC+
Sbjct: 530 EASPPDGVLAVSLLRHQRIALSWMSQKE---------TSGNPCF---------------- 564
Query: 372 AFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAH-----------SGRGGSLG 420
GGILAD GLGKT+ TI+L++ S GG
Sbjct: 565 ------------------GGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQ 606
Query: 421 SQAMTQSFIEGGEVSDTVDNFSHIPKKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQ 480
S F E V D+ + K + +G +LI+CP +L+ Q
Sbjct: 607 SDHSQVVFNENKVVEDS-------------------LCKMRGRPAAG-TLIVCPTSLMRQ 646
Query: 481 WKVEIETHVS-PGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNENAEN---- 535
W E+ V+ LS+ V++G SR +D LA+ DVVITTY L S+ + + E
Sbjct: 647 WADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYS-LVSKRKHMDCEPVEFL 705
Query: 536 SGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRF 595
SG L + WFRVVLDEA +IK+ K+Q S+A + L A +RWCL+GTPIQN++ D+YS RF
Sbjct: 706 SGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRF 765
Query: 596 LRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPA 655
L+ +P+ + + I+ P G K +Q+ILK +MLRRTK+ T +GKP++ LPP
Sbjct: 766 LKYDPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKD-TLLDGKPVISLPPK 824
Query: 656 DMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHP 713
+++ + T E+DFY L S+ +F ++ E G V NY +IL +LLRLRQ C HP
Sbjct: 825 SIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 882
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 225 bits (573), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 245/512 (47%), Gaps = 107/512 (20%)
Query: 265 RPFSQKVTLPHAKTERPSQNGDENENDDSISEVDLENIVGVGSGSEL-----EEMDPPGN 319
RP + K +P +E + + + N++ + + EN++ + +L E + P G
Sbjct: 336 RPLAMK--MPVVSSEYSTVSHNFNQSGGLKLQSNKENMIFQAALQDLTQPNSEAILPDGV 393
Query: 320 LLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATI 379
L L +Q+ AL WM Q E T+ PC
Sbjct: 394 LTVPLLRHQRIALSWMAQKE---------TSGFPC------------------------- 419
Query: 380 EFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFI----EGGEV- 434
GGILAD GLGKT+ TI+L++ + ++ + E GE
Sbjct: 420 ---------SGGILADDQGLGKTVSTIALILKERSKPAQACEESTKKEIFDLESETGECA 470
Query: 435 ----SDTVDNFSHIPKKASKF-TGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHV 489
S +F H +++ G D + K +G +L++CP +++ QW E+ V
Sbjct: 471 PLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRPAAG-TLVVCPTSVMRQWADELHKKV 529
Query: 490 -SPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEF------SNENAEN------- 535
S +LS+ V++G SR +D LA+ DVV+TT+ +++ E +E+ E
Sbjct: 530 TSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDGG 589
Query: 536 -------------------------------SGGLFSIRWFRVVLDEAHTIKSSKSQVSM 564
SG L + WFRVVLDEA +IK+ K+QV+
Sbjct: 590 TAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVAR 649
Query: 565 AAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLK 624
A L A +RWCL+GTPIQN+++D+YS RFL+ +P+ + + I+ P +G +
Sbjct: 650 ACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQ 709
Query: 625 LVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFD 684
+Q+ILK +MLRRTK S +GKPI+ LPP +++ + T E+DFY L S+ +F
Sbjct: 710 KLQAILKTVMLRRTKGSL-LDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFR 768
Query: 685 QFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
++ E G V NY +IL +LLRLRQ CDHP LV
Sbjct: 769 EYAEAGTVKQNYVNILLMLLRLRQACDHPLLV 800
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/408 (34%), Positives = 213/408 (52%), Gaps = 62/408 (15%)
Query: 364 RELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQA 423
R I L+ + + T FP + GGILAD GLGKT+ TI+L++ + ++
Sbjct: 558 RHQRIALSWMAQKETSGFPCS-----GGILADDQGLGKTVSTIALILKERSKPAQACEES 612
Query: 424 MTQSFI----EGGEV-----SDTVDNFSHIPKKASKF-TGFDKIIKQKNALTSGCSLIIC 473
+ E GE S +F H +++ G D + K +G +L++C
Sbjct: 613 TKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRPAAG-TLVVC 671
Query: 474 PMTLLGQWKVEIETHV-SPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEF---- 528
P +++ QW E+ V S +LS+ V++G SR +D LA+ DVV+TT+ +++ E
Sbjct: 672 PTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQP 731
Query: 529 --SNENAEN--------------------------------------SGGLFSIRWFRVV 548
+E+ E SG L + WFRVV
Sbjct: 732 LVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKVSWFRVV 791
Query: 549 LDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWN 608
LDEA +IK+ K+QV+ A L A +RWCL+GTPIQN+++D+YS RFL+ +P+ + +
Sbjct: 792 LDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFC 851
Query: 609 RLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAE 668
I+ P +G + +Q+ILK +MLRRTK S +GKPI+ LPP +++ + T E
Sbjct: 852 STIKNPITRNPVKGYQKLQAILKTVMLRRTKGSL-LDGKPIISLPPKSIELRKVDFTVEE 910
Query: 669 KDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
+DFY L S+ +F ++ E G V NY +IL +LLRLRQ CDHP LV
Sbjct: 911 RDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLV 958
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 245/513 (47%), Gaps = 109/513 (21%)
Query: 265 RPFSQKVTLPHAKTERPSQNGDENENDDSISEVDLENIVGVGSGSEL-----EEMDPPGN 319
RP + K +P +E + + + N++ + + EN++ + +L E + P G
Sbjct: 501 RPLAMK--MPVVSSEYSTVSHNFNQSGGLKLQSNKENMIFQAALQDLTQPNSEAILPDGV 558
Query: 320 LLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATI 379
L L +Q+ AL WM Q E T+ PC
Sbjct: 559 LTVPLLRHQRIALSWMAQKE---------TSGFPC------------------------- 584
Query: 380 EFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFI----EGGEV- 434
GGILAD GLGKT+ TI+L++ + ++ + E GE
Sbjct: 585 ---------SGGILADDQGLGKTVSTIALILKERSKPAQACEESTKKEIFDLESETGECA 635
Query: 435 ----SDTVDNFSH--IPKKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETH 488
S +F H + +K G D + K +G +L++CP +++ QW E+
Sbjct: 636 PLKPSGRSKHFEHSQLLSNENKVGG-DSVGKVTGRPAAG-TLVVCPTSVMRQWADELHKK 693
Query: 489 V-SPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEF------SNENAEN------ 535
V S +LS+ V++G SR +D LA+ DVV+TT+ +++ E +E+ E
Sbjct: 694 VTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDG 753
Query: 536 --------------------------------SGGLFSIRWFRVVLDEAHTIKSSKSQVS 563
SG L + WFRVVLDEA +IK+ K+QV+
Sbjct: 754 GTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVA 813
Query: 564 MAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGL 623
A L A +RWCL+GTPIQN+++D+YS RFL+ +P+ + + I+ P +G
Sbjct: 814 RACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGY 873
Query: 624 KLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKF 683
+ +Q+ILK +MLRRTK S +GKPI+ LPP +++ + T E+DFY L S+ +F
Sbjct: 874 QKLQAILKTVMLRRTKGSL-LDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQF 932
Query: 684 DQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
++ E G V NY +IL +LLRLRQ CDHP LV
Sbjct: 933 REYAEAGTVKQNYVNILLMLLRLRQACDHPLLV 965
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 229/434 (52%), Gaps = 41/434 (9%)
Query: 284 NGDENENDDSISEVDLENIVGVGSGSELEEMDPPGNLL-CELRPYQKQALYWMIQMEKGR 342
NGD+ D VD EN+ +G +L +PP ++ EL +QK+ L W++ EK
Sbjct: 175 NGDKRSVDKIFKLVD-ENVKLMG---KLVAAEPPREVIKSELFAHQKEGLGWLLHREKS- 229
Query: 343 SVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKT 402
L P W+ D +LN + + + P L +GG+ AD MGLGKT
Sbjct: 230 ------GELPPFWEE---KDGE----FLNTLTNYRSDKRPDPL---RGGVFADDMGLGKT 273
Query: 403 IMTISLLVAHSGRGGSLGSQAMTQSFIEG-GEVSDTVDNFSHIPKKASKFTGFDKIIKQK 461
+ +SL+ R G+ + T+ ++G G+ + K + T K +K
Sbjct: 274 LTLLSLIAFD--RYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSESVT--RKKLKTD 329
Query: 462 NAL----TSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKSLAQSDVV 517
+ + + +LI+CP +++ W ++E H PG L +Y+++G R D L + D+V
Sbjct: 330 DVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIV 389
Query: 518 ITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCL 577
+TTYG LA E S E++ + + W R++LDEAHTIK++ +Q S L A +RW +
Sbjct: 390 LTTYGTLAVEESWEDSP----VKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAV 445
Query: 578 TGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQSILKPIMLRR 637
TGTPIQN D+YSL+ FLR EP+ ++W LIQ+P G+++GL +Q ++ I LRR
Sbjct: 446 TGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRR 505
Query: 638 TKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYA 697
TK K ++ LPP ++ Y E + E+ Y+ + +K + G ++ NY+
Sbjct: 506 TKE------KSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYS 559
Query: 698 SILELLLRLRQCCD 711
++L ++LRLRQ CD
Sbjct: 560 TVLSIILRLRQLCD 573
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 215 bits (548), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 214/461 (46%), Gaps = 124/461 (26%)
Query: 313 EMDPP-GNLLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLN 371
E PP G L L +Q+ AL WM Q E T+ +PC+
Sbjct: 529 EASPPDGVLAVSLLRHQRIALSWMSQKE---------TSGNPCF---------------- 563
Query: 372 AFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAH-----------SGRGGSLG 420
GGILAD GLGKT+ TI+L++ S GG
Sbjct: 564 ------------------GGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQ 605
Query: 421 SQAMTQSFIEGGEVSDTVDNFSHIPKKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQ 480
S F E V D+ + K + +G +LI+CP +L+ Q
Sbjct: 606 SDHSQVVFNENKVVEDS-------------------LCKMRGRPAAG-TLIVCPTSLMRQ 645
Query: 481 WKVEIETHVS-PGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNE-------- 531
W E+ V+ LS+ V++G SR +D LA+ DVVITTY +++ E +
Sbjct: 646 WADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSVEVPKQPRDRADEE 705
Query: 532 ----------------------NAEN-----------------SGGLFSIRWFRVVLDEA 552
N++ SG L + WFRVVLDEA
Sbjct: 706 KGGIHDGGVESVGFGSNKKDLPNSQKKGTKKRKHMDCEPVEFLSGPLAQVSWFRVVLDEA 765
Query: 553 HTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQ 612
+IK+ K+Q S+A + L A +RWCL+GTPIQN++ D+YS RFL+ +P+ + + I+
Sbjct: 766 QSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIK 825
Query: 613 KPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFY 672
P G K +Q+ILK +MLRRTK+ T +GKP++ LPP +++ + T E+DFY
Sbjct: 826 NPISSYPGEGYKTLQAILKKVMLRRTKD-TLLDGKPVISLPPKSIELRRVDFTKEERDFY 884
Query: 673 EALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHP 713
L S+ +F ++ E G V NY +IL +LLRLRQ C HP
Sbjct: 885 SKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 925
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 223/473 (47%), Gaps = 113/473 (23%)
Query: 313 EMDPPGNLL-CELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLN 371
E+D P LL L +QK AL WM Q E +LH C
Sbjct: 214 EVDLPAGLLSVPLMKHQKIALAWMFQKET--------NSLH-CM---------------- 248
Query: 372 AFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVA--HSGRGGSLGSQAMTQSFI 429
GGILAD GLGKT+ TI+L++ H + S S +
Sbjct: 249 ------------------GGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEAL 290
Query: 430 EGGEVSDTVDNFSHIPKKASKFTGFD-----KIIKQKNALTS----------GCSLIICP 474
+ ++ + F KAS +G + K K + A TS +LI+CP
Sbjct: 291 DLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCP 350
Query: 475 MTLLGQWKVEIETHVS-PGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGV---------- 523
+++ QW E++ V+ LS+ +++G +R +D LA+ DVV+TTY +
Sbjct: 351 ASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPL 410
Query: 524 ---------------LASEFS--------------------NENA-----ENSGGLFSIR 543
LAS FS N NA +SG L +
Sbjct: 411 VDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVG 470
Query: 544 WFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGH 603
WFRVVLDEA TIK+ ++QV+ A L A +RWCL+GTPIQN ++D+YS RFL+ +P+
Sbjct: 471 WFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAV 530
Query: 604 WAWWNRLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCE 663
+ + I+ P +G K +Q++L+ IMLRRTK T +G+PI+ LPP + + +
Sbjct: 531 YKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTK-GTLLDGQPIINLPPKTINLSQVD 589
Query: 664 PTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
+ E+ FY L S+ +F + G + NYA+IL +LLRLRQ CDHP LV
Sbjct: 590 FSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLV 642
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 158/530 (29%), Positives = 239/530 (45%), Gaps = 130/530 (24%)
Query: 273 LPHAKTERPSQN--GDENENDDSISEVDLENIVGVGSGSELEEMDPPGNLLCELRPYQKQ 330
L HA + P G E+ N D+ + + + V + E PPG L L +QK
Sbjct: 228 LHHAGSSDPMHRFGGGEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKI 287
Query: 331 ALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKG 390
AL WM Q E T+ C G
Sbjct: 288 ALAWMFQKE---------TSSFNC----------------------------------PG 304
Query: 391 GILADAMGLGKTIMTISLL----VAHSGRGGSLGSQAMTQSFIEGGEVSDTV--DNFSHI 444
GILAD GLGKT+ TI+L+ + + S Q ++ + SD ++ SH+
Sbjct: 305 GILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSHV 364
Query: 445 PKKASKFTGFDKII-------------------KQKNALT--------SGCSLIICPMTL 477
+ + + + ++ N+ T + +LI+CP ++
Sbjct: 365 KPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPASV 424
Query: 478 LGQWKVEIETHVSPGS-LSLYVHYGQSRPRDAKSLAQSDVVITTYGV------------- 523
+ QW E++ VS S LS+ V++G +R +D LA+ DVV+TTY +
Sbjct: 425 VRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNEAPNKFLVDE 484
Query: 524 ------------LASEFSNENAE-------------------------NSGGLFSIRWFR 546
LAS FSN + G L + WFR
Sbjct: 485 DENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSEPDCGPLGKVGWFR 544
Query: 547 VVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAW 606
+VLDEA TIK+ ++Q++ + L A +RWCL+GTPIQN ++D+YS RFLR +P+ +
Sbjct: 545 IVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKS 604
Query: 607 WNRLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTD 666
+ I+ P +G K +Q++L+ IMLRRTK T +GKPI+ LPP + + + +
Sbjct: 605 FYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKG-TLLDGKPIINLPPKVVNLSQVDFSV 663
Query: 667 AEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
AE+ FY+ L S+ +F + + G + NYA+IL LLLRLRQ CDHP LV
Sbjct: 664 AERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLV 713
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 168/348 (48%), Gaps = 87/348 (25%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GGILAD GLGKTI TISL++ L SQ+
Sbjct: 76 GGILADDQGLGKTISTISLILLQK-----LKSQSKQ------------------------ 106
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVS-PGSLSLYVHYGQSRPRDA 508
+++ SG +LI+CP +++ QW E++ VS LS+ VH+G R +D
Sbjct: 107 ---------RKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDP 157
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENS--------------------GGLFSIRWFRVV 548
+A DVV+TTY ++ +E N G L +RW RVV
Sbjct: 158 TEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVV 217
Query: 549 LDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWN 608
LDEAHTIK+ ++ ++ A +L A +RWCLTGTPI+N ++D+YS RFLR P+ ++
Sbjct: 218 LDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFH 277
Query: 609 RLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAE 668
+ I+ P + G K +Q+IL+ IMLRRTK E
Sbjct: 278 QRIKAPIDKKPLHGYKKLQAILRGIMLRRTK----------------------------E 309
Query: 669 KDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
FY L S+ KF+++ G + + A +L +LLRLRQ C+HP LV
Sbjct: 310 WSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLV 357
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 138/512 (26%), Positives = 213/512 (41%), Gaps = 122/512 (23%)
Query: 315 DPPGNLLCELRPYQKQALYWMIQMEKGRSV----DETDTTLHPCWDAYRLADKRELVIYL 370
D +LL ELRPYQ++A YWM+Q E+G + E + + P + D ++L
Sbjct: 279 DDIADLLPELRPYQRRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDS-ATKMFL 337
Query: 371 NAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHS---------GRGGSL-- 419
N FSG ++ +GGILAD MGLGKT+ ++ + +H G S+
Sbjct: 338 NPFSGNISLTPEYFSPRIQGGILADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSVTD 397
Query: 420 ----GSQAMTQSFIE--GGEVS------------DTVDNFSHI------PK--------- 446
G + + + +E G VS D D + H PK
Sbjct: 398 VLNAGLRRLKRERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQH 457
Query: 447 -------KASKFTGFDKIIKQKNALTSGCS---------------LIICPMTLLGQWKVE 484
K SK + I+++ + CS LI+CP +L QW E
Sbjct: 458 IDEKASQKKSKKDATEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSE 517
Query: 485 IETHVSPGSLSLYVHYGQSRPR-------DAKSLAQSDVVITTYGVLASEFSNENAENSG 537
I H GSL ++ G D L +D+V+TTY VL + +++ + G
Sbjct: 518 ITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDG 577
Query: 538 GLFSIR----------------WFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTP 581
+R W+R+ LDEA ++S+ + + A L RWC+TGTP
Sbjct: 578 DRHCLRFQKRYPVIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTP 637
Query: 582 IQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQSILKPIMLRRTKNS 641
IQ L+D++ LL+FL+ P+ WW +I+ P+E D + ++ K +M R +K
Sbjct: 638 IQRKLDDLFGLLKFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVH 697
Query: 642 TDREGKPILVLPPADMQIIYCEPTDAEKDFY-------------------EALFKRSKVK 682
E L LPP + + + + + E+ FY + KR
Sbjct: 698 VADE----LQLPPQEECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTS 753
Query: 683 FDQFVEQGRVLH-NYASILELLLRLRQCCDHP 713
D + V H A +L LL+LRQ C HP
Sbjct: 754 SDNPL----VTHAEAAKLLNSLLKLRQACCHP 781
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 137/474 (28%), Positives = 211/474 (44%), Gaps = 81/474 (17%)
Query: 258 GDFCTNKRPFSQKVTLPHAKTERPSQNGDENENDDSISEVDLENIVGVGSGSELEEMDPP 317
GD P S H PS + DEN ++ + + D + VG E+ D
Sbjct: 33 GDLGVAMEPHSH-----HKNAILPSSSQDENLKEEEVPDDD--DSVGGEVQGEVNANDYI 85
Query: 318 GNLLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVI----YLNAF 373
N +K W I EK + ++ D A +L+I Y F
Sbjct: 86 PNPAAPANTKRK----WQIMKEKVQMTEDDDFDEQNAVIAEAAEQPLDLIIPLLKYQKEF 141
Query: 374 SGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGE 433
ATI+ L +GGILAD MG+GKTI ISL++A
Sbjct: 142 LAWATIQ---ELSAVRGGILADEMGMGKTIQAISLVLARR-------------------- 178
Query: 434 VSDTVDNFSHIPKKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGS 493
++ + K+ G +L++ P L QW EI SPGS
Sbjct: 179 ----------------------EVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGS 216
Query: 494 LSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNENA--ENSGGLFSIRWFRVVLDE 551
+ ++G R ++ + L D V+TT ++ +E+ + E L SI+W R+++DE
Sbjct: 217 TRVLQYHGPKRDKNVQKLMNYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDE 276
Query: 552 AHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLL--RFLRIEPWGHWAWWNR 609
AH IK+ S+ + A AL A RW L+GTP+QN+++++YSL+ FL + ++ R
Sbjct: 277 AHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFR 336
Query: 610 LIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQI---IYCEPTD 666
F + +IL + R +N P +++ MQI + + D
Sbjct: 337 HTHITFARNVTVKFLIGGNILPLSIPVRIENV------PAVLI----MQINTSLGGKRRD 386
Query: 667 A----EKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
A E DFYE+L+K SK FD +++ G +++NYA I LL+RLRQ DHP+LV
Sbjct: 387 ALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLV 440
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 135/505 (26%), Positives = 210/505 (41%), Gaps = 133/505 (26%)
Query: 291 DDSISE-VDLENIVGVGSGSELEEMDPPGNLLCELRPYQKQALYWMIQMEKGRSVDETDT 349
D+ +SE VDL+ V + E +PP +L+ L YQK+ L W + E
Sbjct: 109 DEHMSEDVDLDQHNAVIA----ETAEPPSDLIMPLLRYQKEFLAWATKQE---------- 154
Query: 350 TLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLL 409
Q GGILAD MG+GKTI ISL+
Sbjct: 155 ------------------------------------QSVAGGILADEMGMGKTIQAISLV 178
Query: 410 VAH-----SGRGGSLG-----------SQAMTQ--SFIEGGEVSDTVDNFSHIPKKASKF 451
+A + G + G SQ + + F G V + + K +F
Sbjct: 179 LARREVDRAQFGEAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEF 238
Query: 452 TGFDKIIK---------QKNALTSGCSLIICPMTLL-GQWKVEIETHVSPGSLSLYVHYG 501
+D ++ ++N + S C + + + + P ++
Sbjct: 239 MNYDFVLTTYSTVESEYRRNIMPSKVQCAYCSKSFYPKKLVIHLRYFCGPSAVKTAKQSK 298
Query: 502 QSRPRDAKSLAQS--------------DVVITTYGVLASEFSNENAENSGGLFSIRWFRV 547
Q R + + S +Q T V + +++ E S L S++W R+
Sbjct: 299 QKRKKTSDSSSQQGKEADAGEDKKLKKSKKKTKQTVEKDQLGSDDKEKSL-LHSVKWNRI 357
Query: 548 VLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWG----- 602
+LDEAH IK +S + A AL A RW L+GTP+QN + ++YSL+RFL+I P+
Sbjct: 358 ILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYSYYFCK 417
Query: 603 ------------------------HWAWWNRLIQKP------FEGGDERGLKLVQSILKP 632
H+ WWN+ + KP F G + L +LK
Sbjct: 418 DCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRAMILLKHKVLKD 477
Query: 633 IMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRV 692
I+LRRTK + L LPP + + E D+YE+L+K S+ +F+ ++E G +
Sbjct: 478 ILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIEAGTL 533
Query: 693 LHNYASILELLLRLRQCCDHPFLVM 717
++NYA I +LL RLRQ DHP+LV+
Sbjct: 534 MNNYAHIFDLLTRLRQAVDHPYLVV 558
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 67/327 (20%)
Query: 390 GGILADAMGLGKTIMTISLLVA-HSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
GILAD MGLGKT+ TISLL H RG
Sbjct: 209 NGILADEMGLGKTLQTISLLAYLHEYRG-------------------------------- 236
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+G +++ P + LG W EI ++ P +
Sbjct: 237 ----------------INGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL----GNPEER 276
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
+ + + +V + + + F E + L W +++DEAH IK+ S +S
Sbjct: 277 RHIREDLLVAGKFDICVTSFEMAIKEKTA-LRRFSWRYIIIDEAHRIKNENSLLSKTMRL 335
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQS 628
+ R +TGTP+QNNL ++++LL FL E + ++ Q E + ++ +
Sbjct: 336 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHK 395
Query: 629 ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVE 688
+L+P +LRR K+ ++ LPP I+ + +K +Y+AL ++ + E
Sbjct: 396 VLRPFLLRRLKSDVEK------GLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGE 449
Query: 689 QGRVLHNYASILELLLRLRQCCDHPFL 715
+ R+L+ + ++LR+CC+HP+L
Sbjct: 450 RKRLLN-------IAMQLRKCCNHPYL 469
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 67/327 (20%)
Query: 390 GGILADAMGLGKTIMTISLLVA-HSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
GILAD MGLGKT+ TISLL H RG
Sbjct: 209 NGILADEMGLGKTLQTISLLAYLHEYRG-------------------------------- 236
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+G +++ P + LG W EI ++ P +
Sbjct: 237 ----------------INGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL----GNPEER 276
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
+ + + +V + + + F E + L W +++DEAH IK+ S +S
Sbjct: 277 RHIREDLLVAGKFDICVTSFEMAIKEKTA-LRRFSWRYIIIDEAHRIKNENSLLSKTMRL 335
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQS 628
+ R +TGTP+QNNL ++++LL FL E + ++ Q E + ++ +
Sbjct: 336 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHK 395
Query: 629 ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVE 688
+L+P +LRR K+ ++ LPP I+ + +K +Y+AL ++ + E
Sbjct: 396 VLRPFLLRRLKSDVEK------GLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGE 449
Query: 689 QGRVLHNYASILELLLRLRQCCDHPFL 715
+ R+L+ + ++LR+CC+HP+L
Sbjct: 450 RKRLLN-------IAMQLRKCCNHPYL 469
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 67/327 (20%)
Query: 390 GGILADAMGLGKTIMTISLLVA-HSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
GILAD MGLGKT+ TISLL H RG
Sbjct: 209 NGILADEMGLGKTLQTISLLAYLHEYRG-------------------------------- 236
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+G +++ P + LG W EI ++ P +
Sbjct: 237 ----------------INGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL----GNPEER 276
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
+ + + +V + + + F E + L W +++DEAH IK+ S +S
Sbjct: 277 RHIREDLLVAGKFDICVTSFEMAIKEKTA-LRRFSWRYIIIDEAHRIKNENSLLSKTMRL 335
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQS 628
+ R +TGTP+QNNL ++++LL FL E + ++ Q E + ++ +
Sbjct: 336 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHK 395
Query: 629 ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVE 688
+L+P +LRR K+ ++ LPP I+ + +K +Y+AL ++ + E
Sbjct: 396 VLRPFLLRRLKSDVEK------GLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGE 449
Query: 689 QGRVLHNYASILELLLRLRQCCDHPFL 715
+ R+L+ + ++LR+CC+HP+L
Sbjct: 450 RKRLLN-------IAMQLRKCCNHPYL 469
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 67/327 (20%)
Query: 390 GGILADAMGLGKTIMTISLLVA-HSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
GILAD MGLGKT+ TISLL H RG
Sbjct: 214 NGILADEMGLGKTLQTISLLAYLHEYRG-------------------------------- 241
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+G +++ P + LG W EI ++ P +
Sbjct: 242 ----------------INGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL----GNPEER 281
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
+ + + +V + + + F E + L W +++DEAH IK+ S +S
Sbjct: 282 RHIREELLVAGKFDICVTSFEMAIKEKTT-LRRFSWRYIIIDEAHRIKNENSLLSKTMRL 340
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQS 628
+ R +TGTP+QNNL ++++LL FL E + ++ Q E + ++ +
Sbjct: 341 FSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHK 400
Query: 629 ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVE 688
+L+P +LRR K+ ++ LPP I+ + +K +Y+AL ++ + E
Sbjct: 401 VLRPFLLRRLKSDVEK------GLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGE 454
Query: 689 QGRVLHNYASILELLLRLRQCCDHPFL 715
+ R+L+ + ++LR+CC+HP+L
Sbjct: 455 RKRLLN-------IAMQLRKCCNHPYL 474
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 67/327 (20%)
Query: 390 GGILADAMGLGKTIMTISLLVA-HSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
GILAD MGLGKT+ TISLL H RG
Sbjct: 214 NGILADEMGLGKTLQTISLLAYLHEYRG-------------------------------- 241
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+G +++ P + LG W EI ++ P +
Sbjct: 242 ----------------INGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL----GNPEER 281
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
+ + + +V + + + F E + L W +++DEAH IK+ S +S
Sbjct: 282 RHIREELLVAGKFDICVTSFEMAIKEKTT-LRRFSWRYIIIDEAHRIKNENSLLSKTMRL 340
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQS 628
+ R +TGTP+QNNL ++++LL FL E + ++ Q E + ++ +
Sbjct: 341 FSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHK 400
Query: 629 ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVE 688
+L+P +LRR K+ ++ LPP I+ + +K +Y+AL ++ + E
Sbjct: 401 VLRPFLLRRLKSDVEK------GLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGE 454
Query: 689 QGRVLHNYASILELLLRLRQCCDHPFL 715
+ R+L+ + ++LR+CC+HP+L
Sbjct: 455 RKRLLN-------IAMQLRKCCNHPYL 474
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 157/388 (40%), Gaps = 84/388 (21%)
Query: 356 DAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSG- 414
D Y+L EL + L + E + GIL D MGLGKT+ +++ + +
Sbjct: 1439 DDYKLC--TELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAE 1496
Query: 415 RGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKFTGFDKIIKQKNALTSGCSLIICP 474
R GS +D +D F S+I+CP
Sbjct: 1497 RRGS----------------TDELDVFP--------------------------SIIVCP 1514
Query: 475 MTLLGQWKVEIETHVSPGSLSL--YVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNEN 532
TL+G W EIE ++ LS+ YV Q R + +V+IT+Y V+ +
Sbjct: 1515 STLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVVRKDVDY-- 1572
Query: 533 AENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSL 592
L W +LDE H IK++KS+++ A L A R L+GTPIQNN+ +++SL
Sbjct: 1573 ------LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSL 1626
Query: 593 LRFLRIEPWGHWAWWNRLIQKPFEGGD---------ERGLKLVQSILK---PIMLRRTKN 640
FL G + KP E G+ ++++ K P +LRRTK
Sbjct: 1627 FDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKE 1686
Query: 641 STDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSK-------VKFDQFVEQGR-- 691
+ LP +Q YC+ + + YE S +K D + G
Sbjct: 1687 EVLSD------LPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNAD 1740
Query: 692 VLHNYAS--ILELLLRLRQCCDHPFLVM 717
V AS + + L L + C HP LV+
Sbjct: 1741 VAPTKASTHVFQALQYLLKLCSHPLLVL 1768
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 157/388 (40%), Gaps = 84/388 (21%)
Query: 356 DAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSG- 414
D Y+L EL + L + E + GIL D MGLGKT+ +++ + +
Sbjct: 1470 DDYKLC--TELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAE 1527
Query: 415 RGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKFTGFDKIIKQKNALTSGCSLIICP 474
R GS +D +D F S+I+CP
Sbjct: 1528 RRGS----------------TDELDVFP--------------------------SIIVCP 1545
Query: 475 MTLLGQWKVEIETHVSPGSLSL--YVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNEN 532
TL+G W EIE ++ LS+ YV Q R + +V+IT+Y V+ +
Sbjct: 1546 STLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVVRKDVDY-- 1603
Query: 533 AENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSL 592
L W +LDE H IK++KS+++ A L A R L+GTPIQNN+ +++SL
Sbjct: 1604 ------LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSL 1657
Query: 593 LRFLRIEPWGHWAWWNRLIQKPFEGGD---------ERGLKLVQSILK---PIMLRRTKN 640
FL G + KP E G+ ++++ K P +LRRTK
Sbjct: 1658 FDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKE 1717
Query: 641 STDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSK-------VKFDQFVEQGR-- 691
+ LP +Q YC+ + + YE S +K D + G
Sbjct: 1718 EVLSD------LPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNAD 1771
Query: 692 VLHNYAS--ILELLLRLRQCCDHPFLVM 717
V AS + + L L + C HP LV+
Sbjct: 1772 VAPTKASTHVFQALQYLLKLCSHPLLVL 1799
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 154/339 (45%), Gaps = 81/339 (23%)
Query: 392 ILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKF 451
ILAD MGLGKT+ ++S+L F++ N IP
Sbjct: 647 ILADEMGLGKTVQSVSML-----------------GFLQ---------NTQQIP------ 674
Query: 452 TGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRP------ 505
G L++ P++ L W E + ++ +YV SR
Sbjct: 675 ---------------GPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYE 719
Query: 506 -RDAKSLAQS---DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQ 561
+ K + + + ++TTY V+ ++ L I+W +++DEAH +K+S++Q
Sbjct: 720 FYNEKKVGRPIKFNALLTTYEVVL--------KDKAVLSKIKWIYLMVDEAHRLKNSEAQ 771
Query: 562 VSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQ--KPFEGGD 619
+ A + +TGTP+QN++E++++LL FL +P G + + ++ K +
Sbjct: 772 LYTALLEFSTKNKLLITGTPLQNSVEELWALLHFL--DP-GKFKNKDEFVENYKNLSSFN 828
Query: 620 ERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRS 679
E L + L+P +LRR ++ LPP +I+ E + +K +Y+ + +R+
Sbjct: 829 ESELANLHLELRPHILRRVIKDVEKS------LPPKIERILRVEMSPLQKQYYKWILERN 882
Query: 680 KVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMS 718
++ V +V S+L +++ L++CC+HPFL S
Sbjct: 883 FHDLNKGVRGNQV-----SLLNIVVELKKCCNHPFLFES 916
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 81/342 (23%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKTIMTI+LL + G G
Sbjct: 556 NGILADEMGLGKTIMTIALLAHLACDKGIWGPH--------------------------- 588
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
LI+ P +++ W+ E + + ++G ++ R K
Sbjct: 589 --------------------LIVVPTSVMLNWETEFLKWCP--AFKILTYFGSAKERKLK 626
Query: 510 -----SLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSM 564
L V ITTY ++ ++S +W ++LDEAH IK+ KSQ
Sbjct: 627 RQGWMKLNSFHVCITTYRLVI--------QDSKMFKRKKWKYLILDEAHLIKNWKSQRWQ 678
Query: 565 AAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEG---GDER 621
+ +R LTGTP+QN+L +++SL+ FL + + P G G E+
Sbjct: 679 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEK 738
Query: 622 GLKLV----QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFK 677
K V ++L+P +LRR K +++ LP +I+C + +++ YE
Sbjct: 739 INKEVIDRLHNVLRPFLLRRLKRDVEKQ------LPSKHEHVIFCRLSKRQRNLYEDFIA 792
Query: 678 RSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSR 719
++ + + G ++ ++ ++++LR+ C+HP L R
Sbjct: 793 STETQ--ATLTSG----SFFGMISIIMQLRKVCNHPDLFEGR 828
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 143/342 (41%), Gaps = 83/342 (24%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKT+ ISL+
Sbjct: 774 NGILADEMGLGKTVQVISLICY-------------------------------------- 795
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
+++ KN G L++ P ++L W+ EI + S+ V+ G P + +
Sbjct: 796 -------LMETKN--DRGPFLVVVPSSVLPGWQSEI--NFWAPSIHKIVYCG--TPDERR 842
Query: 510 SLAQSDVVITTYGVLASEFSN-ENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
L + +V + VL + + N + L I W +++DE H IK++ +++
Sbjct: 843 KLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKH 902
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERG------ 622
++ R LTGTP+QNNLE++++LL FL + +++ KPF+ E
Sbjct: 903 YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALL 962
Query: 623 --------LKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEA 674
+ + +L+P +LRR K+ + E LP ++I CE + + +
Sbjct: 963 SEEENLLIINRLHQVLRPFVLRRLKHKVENE------LPEKIERLIRCEAS----AYQKL 1012
Query: 675 LFKRSKVKFDQFVE-QGRVLHNYASILELLLRLRQCCDHPFL 715
L KR + + R +HN ++ LR C+HP+L
Sbjct: 1013 LMKRVEDNLGSIGNAKSRAVHNS------VMELRNICNHPYL 1048
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 143/342 (41%), Gaps = 83/342 (24%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKT+ ISL+
Sbjct: 774 NGILADEMGLGKTVQVISLICY-------------------------------------- 795
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
+++ KN G L++ P ++L W+ EI + S+ V+ G P + +
Sbjct: 796 -------LMETKN--DRGPFLVVVPSSVLPGWQSEI--NFWAPSIHKIVYCG--TPDERR 842
Query: 510 SLAQSDVVITTYGVLASEFSN-ENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
L + +V + VL + + N + L I W +++DE H IK++ +++
Sbjct: 843 KLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKH 902
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERG------ 622
++ R LTGTP+QNNLE++++LL FL + +++ KPF+ E
Sbjct: 903 YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALL 962
Query: 623 --------LKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEA 674
+ + +L+P +LRR K+ + E LP ++I CE + + +
Sbjct: 963 SEEENLLIINRLHQVLRPFVLRRLKHKVENE------LPEKIERLIRCEAS----AYQKL 1012
Query: 675 LFKRSKVKFDQFVE-QGRVLHNYASILELLLRLRQCCDHPFL 715
L KR + + R +HN ++ LR C+HP+L
Sbjct: 1013 LMKRVEDNLGSIGNAKSRAVHNS------VMELRNICNHPYL 1048
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 143/342 (41%), Gaps = 83/342 (24%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKT+ ISL+
Sbjct: 774 NGILADEMGLGKTVQVISLICY-------------------------------------- 795
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
+++ KN G L++ P ++L W+ EI + S+ V+ G P + +
Sbjct: 796 -------LMETKN--DRGPFLVVVPSSVLPGWQSEI--NFWAPSIHKIVYCG--TPDERR 842
Query: 510 SLAQSDVVITTYGVLASEFSN-ENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
L + +V + VL + + N + L I W +++DE H IK++ +++
Sbjct: 843 KLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKH 902
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERG------ 622
++ R LTGTP+QNNLE++++LL FL + +++ KPF+ E
Sbjct: 903 YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALL 962
Query: 623 --------LKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEA 674
+ + +L+P +LRR K+ + E LP ++I CE + + +
Sbjct: 963 SEEENLLIINRLHQVLRPFVLRRLKHKVENE------LPEKIERLIRCEAS----AYQKL 1012
Query: 675 LFKRSKVKFDQFVE-QGRVLHNYASILELLLRLRQCCDHPFL 715
L KR + + R +HN ++ LR C+HP+L
Sbjct: 1013 LMKRVEDNLGSIGNAKSRAVHNS------VMELRNICNHPYL 1048
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 148/345 (42%), Gaps = 88/345 (25%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKTI TISL+ G +P
Sbjct: 423 NGILADEMGLGKTIQTISLIAYLLENKG--------------------------VP---- 452
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA- 508
G LI+ P +L W E T V S++ +++ G+ R A
Sbjct: 453 -----------------GPYLIVAPKAVLPNWVNEFATWVP--SIAAFLYDGRLEERKAI 493
Query: 509 -KSLA---QSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSM 564
+ +A + +V+IT Y ++ + L I W+ +++DE H +K+ +S ++
Sbjct: 494 REKIAGEGKFNVLITHYDLIM--------RDKAFLKKIEWYYMIVDEGHRLKNHES--AL 543
Query: 565 AAAALIA---DKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEG---- 617
A L +R LTGTPIQN+L++++SLL FL + + PF
Sbjct: 544 AKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNV 603
Query: 618 --GDERGLKLVQS---ILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFY 672
DE L ++ +++P +LRR K+ ++ LP I+ C+ + +K +Y
Sbjct: 604 SLTDEEELLIIHRLHHVIRPFILRRKKDEVEK------FLPGKTQVILKCDMSAWQKVYY 657
Query: 673 EALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVM 717
+ + +V + + L N L ++LR+CC+HP+L +
Sbjct: 658 KQVTDMGRVGLQTGSGKSKSLQN------LTMQLRKCCNHPYLFV 696
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 86/347 (24%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKTI ++ L AH
Sbjct: 606 NGILADEMGLGKTIQAMAFL-AH------------------------------------- 627
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPR--- 506
+ ++KN G L++ P ++L W EI + P L ++G + R
Sbjct: 628 -------LAEEKNIW--GPFLVVAPASVLNNWADEI-SRFCP-DLKTLPYWGGLQERTIL 676
Query: 507 ----DAKSLAQSD----VVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSS 558
+ K + + D ++IT+Y +L ++ ++W +VLDEA IKSS
Sbjct: 677 RKNINPKRMYRRDAGFHILITSYQLLVTD--------EKYFRRVKWQYMVLDEAQAIKSS 728
Query: 559 KSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG 618
S + R LTGTPIQNN+ ++++LL F+ + + +N K E
Sbjct: 729 SSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENH 788
Query: 619 DERG-------LKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDF 671
E G L + +ILKP MLRR K E L ++C+ + ++ F
Sbjct: 789 AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSE------LTTKTEVTVHCKLSSRQQAF 842
Query: 672 YEALFKRSKVKFDQFVEQGRVLHNYASILELL---LRLRQCCDHPFL 715
Y+A+ ++K+ + + R +L L+ ++LR+ C+HP L
Sbjct: 843 YQAI--KNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPEL 887
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 151/358 (42%), Gaps = 87/358 (24%)
Query: 383 STLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFS 442
S Q GILAD MGLGKTI TI L S
Sbjct: 215 SLWQNGLNGILADQMGLGKTIQTIGFL--------------------------------S 242
Query: 443 HIPKKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQ 502
H+ K G D G L+I P++ L W EI +P S++ +++G
Sbjct: 243 HL-----KGNGLD-----------GPYLVIAPLSTLSNWFNEI-ARFTP-SINAIIYHGD 284
Query: 503 SRPRDA---KSLAQS-----DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHT 554
RD K + ++ +VIT+Y V ++ L W VV+DE H
Sbjct: 285 KNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKR-------ILRHYPWKYVVIDEGHR 337
Query: 555 IKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFL---------RIEPWGHWA 605
+K+ K ++ L D + LTGTP+QNNL +++SLL F+ E W ++
Sbjct: 338 LKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFS 397
Query: 606 WWNRLIQKPFEGGDERGLKLV---QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYC 662
N+ + E ++R ++V IL+P +LRR K + L LP I+Y
Sbjct: 398 EKNK-NEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVE------LSLPRKKEIIMYA 450
Query: 663 EPTDAEKDFYEALFKRS-KVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSR 719
TD +K F E L + + + +G+ + L+++LR+ C+HP L+ +
Sbjct: 451 TMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWK--GKLNNLVIQLRKNCNHPDLLQGQ 506
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 143/335 (42%), Gaps = 89/335 (26%)
Query: 392 ILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKF 451
ILAD MGLGKTI +I+ L SL + ++
Sbjct: 247 ILADEMGLGKTIQSIAFL-------ASLFEENLS-------------------------- 273
Query: 452 TGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA--- 508
L++ P++ + W+ E T ++ +Y G S RD
Sbjct: 274 ----------------PHLVVAPLSTIRNWEREFATWAPHMNVVMYT--GDSEARDVIWE 315
Query: 509 -------KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQ 561
++ DV++TTY ++ S L I+W +++DE H +K+ KS+
Sbjct: 316 HEFYFSEGRKSKFDVLLTTYEMVHPGIS--------VLSPIKWTCMIIDEGHRLKNQKSK 367
Query: 562 VSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDER 621
+ + + + LTGTP+QNNL ++++L+ FL + +G ++K + E
Sbjct: 368 LYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGS-------LEKFQDINKEE 420
Query: 622 GLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKV 681
+ + +L P +LRR K ++ +PP I+ + + +K+ Y+A+ +
Sbjct: 421 QISRLHQMLAPHLLRRLKKDVLKDK-----VPPKKELILRVDMSSQQKEVYKAVITNNY- 474
Query: 682 KFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
Q + + R A I +L++LRQ C HP+L+
Sbjct: 475 ---QVLTKKRD----AKISNVLMKLRQVCSHPYLL 502
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 143/335 (42%), Gaps = 89/335 (26%)
Query: 392 ILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKF 451
ILAD MGLGKTI +I+ L SL + ++
Sbjct: 206 ILADEMGLGKTIQSIAFL-------ASLFEENLSPH------------------------ 234
Query: 452 TGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA--- 508
L++ P++ + W+ E T ++ +Y G S RD
Sbjct: 235 ------------------LVVAPLSTIRNWEREFATWAPHMNVVMYT--GDSEARDVIWE 274
Query: 509 -------KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQ 561
++ DV++TTY ++ S L I+W +++DE H +K+ KS+
Sbjct: 275 HEFYFSEGRKSKFDVLLTTYEMVHPGIS--------VLSPIKWTCMIIDEGHRLKNQKSK 326
Query: 562 VSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDER 621
+ + + + LTGTP+QNNL ++++L+ FL + +G ++K + E
Sbjct: 327 LYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGS-------LEKFQDINKEE 379
Query: 622 GLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKV 681
+ + +L P +LRR K ++ +PP I+ + + +K+ Y+A+ +
Sbjct: 380 QISRLHQMLAPHLLRRLKKDVLKDK-----VPPKKELILRVDMSSQQKEVYKAVITNNY- 433
Query: 682 KFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
Q + + R A I +L++LRQ C HP+L+
Sbjct: 434 ---QVLTKKRD----AKISNVLMKLRQVCSHPYLL 461
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 466 SGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKSLA-QSDVVITTYGVL 524
S +LI+ P L+ W +I+ HV L + V + SLA DVVITT+ L
Sbjct: 753 SKATLIVVPTNLVNHWLTQIQKHVCSDQLRILV-WADHIELSPHSLAWDYDVVITTFSRL 811
Query: 525 ASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVS--MAAAALIADKRWCLTGTPI 582
++E+ N L + W RV+LDE HT+ SS S + A +L A RW LTGTP
Sbjct: 812 SAEW---NPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPT 868
Query: 583 QN----NLEDIYSLLRFLRIEPWG-HWAWWNRLIQKPFEGGDERGLKLVQSILKPIMLRR 637
N L I LL+FL E +G + +W I +PFE E G + +L+ M+
Sbjct: 869 PNTPNSQLSHIQPLLKFLHEEVYGENPKFWEAGILRPFEAEMEEGRLRLLQLLQRCMISS 928
Query: 638 TKNSTDREGKPILVLPPADMQIIY 661
K K + ++PP ++ Y
Sbjct: 929 RK-------KDLQMIPPCIKKVTY 945
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 135/307 (43%), Gaps = 66/307 (21%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GGIL D MGLGKTI TI+ L A G+ G G + +S
Sbjct: 159 GGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLES---------------------- 196
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
DK G LIICP +++ W+ E S +S+Y +G +R +
Sbjct: 197 -----DK----------GPVLIICPSSIIHNWESEFSRWASFFKVSVY--HGSNRDMILE 239
Query: 510 SLAQS--DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAA 567
L +V++T++ F + SG I W V+ DEAH +K+ KS++ A
Sbjct: 240 KLKARGVEVLVTSFDT----FRIQGPVLSG----INWEIVIADEAHRLKNEKSKLYEACL 291
Query: 568 ALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGD-----ERG 622
+ KR LTGT +QN + ++++L ++ G + +P + G ER
Sbjct: 292 EIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERF 351
Query: 623 LKLVQ-------SILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEAL 675
+++ S+L+ MLRRTK T L++ D +++C+ + ++ Y+ +
Sbjct: 352 VQIADKRKQHLGSLLRKYMLRRTKEETIGH----LMMGKED-NVVFCQMSQLQRRVYQRM 406
Query: 676 FKRSKVK 682
+ +++
Sbjct: 407 IQLPEIQ 413
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 147/352 (41%), Gaps = 100/352 (28%)
Query: 392 ILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKF 451
ILAD MGLGKTI +I+LL SL + + IP
Sbjct: 295 ILADEMGLGKTIQSIALL-------ASLFEENL-------------------IP------ 322
Query: 452 TGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRP------ 505
L+I P++ L W+ E T ++ +Y Q+R
Sbjct: 323 -----------------HLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHE 365
Query: 506 --------------------RDAKSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWF 545
+ + DV++T+Y ++ +S L I+W
Sbjct: 366 FYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINL--------DSAVLKPIKWE 417
Query: 546 RVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWA 605
+++DE H +K+ S++ + ++ R LTGTP+QNNL++++ L+ FL +G
Sbjct: 418 CMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLE 477
Query: 606 WWNRLIQKPFEG-GDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEP 664
+ Q+ F+ E + + +L P +LRR K ++ +PP I+ +
Sbjct: 478 EF----QEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKD------MPPKKELILRVDL 527
Query: 665 TDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
+ +K++Y+A+F R+ + ++G S+ +++ LR+ C HP+++
Sbjct: 528 SSLQKEYYKAIFTRN---YQVLTKKGGA---QISLNNIMMELRKVCCHPYML 573
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 143/345 (41%), Gaps = 89/345 (25%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKTI TI+L+ +E ++
Sbjct: 406 NGILADEMGLGKTIQTIALIAY----------------LLESKDLH-------------- 435
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
G LI+ P +L W+ E S LY + R
Sbjct: 436 -----------------GPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRA 478
Query: 510 SLA--QSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMA-A 566
+A + +V+IT Y ++ + L I W +++DE H +K+ + ++
Sbjct: 479 RIAGGKFNVLITHYDLIM--------RDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLG 530
Query: 567 AALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPF-EGG-----DE 620
+R LTGTPIQN+L++++SLL FL + + PF E G DE
Sbjct: 531 TGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDE 590
Query: 621 RGLKLV---QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFK 677
L ++ +++P +LRR K+ ++ LP I+ C+ + +K +Y+
Sbjct: 591 EELLIINRLHHVIRPFLLRRKKSEVEK------FLPGKTQVILKCDMSAWQKLYYK---- 640
Query: 678 RSKVKFDQFVEQGRV-LHN----YASILELLLRLRQCCDHPFLVM 717
Q + GRV LH+ S+ L ++LR+CC+HP+L +
Sbjct: 641 -------QVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFV 678
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 142/337 (42%), Gaps = 33/337 (9%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GILAD MGLGKTI ++ L + G + +D + F K
Sbjct: 606 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLP 665
Query: 450 KFTGF-DKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDA 508
+ G ++ I +KN + W V + + + ++ V + DA
Sbjct: 666 YWGGLQERTILRKNINPKRVMFFSTWIISFDPWAVR-QICICKRACNV-VRFQTLSDMDA 723
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
++IT+Y +L ++ ++W +VLDEA IKSS S +
Sbjct: 724 GF----HILITSYQLLVTD--------EKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLS 771
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERG------ 622
R LTGTPIQNN+ ++++LL F+ + + +N K E E G
Sbjct: 772 FNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEH 831
Query: 623 -LKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKV 681
L + +ILKP MLRR K E L ++C+ + ++ FY+A+ ++K+
Sbjct: 832 QLNRLHAILKPFMLRRVKKDVVSE------LTTKTEVTVHCKLSSRQQAFYQAI--KNKI 883
Query: 682 KFDQFVEQGRVLHNYASILELL---LRLRQCCDHPFL 715
+ + R +L L+ ++LR+ C+HP L
Sbjct: 884 SLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPEL 920
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 147/358 (41%), Gaps = 90/358 (25%)
Query: 388 AKGGILADAMGLGKTIMTISLLVA--HSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIP 445
KGGIL D MGLGKT+ S L HS
Sbjct: 395 GKGGILGDDMGLGKTMQICSFLAGLFHS-------------------------------- 422
Query: 446 KKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIET-HVSPGSLSLYVHYGQSR 504
K+IK+ +L++ P TLL W E+ T +S + Y ++R
Sbjct: 423 ----------KLIKR--------ALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAR 464
Query: 505 PRDAKSLAQSD-VVITTYGVLAS---------EFSNENAENSGGLFSIRWFRVVLDEAHT 554
D + Q +++TTY ++ + +++E+ E+ +W ++LDE H
Sbjct: 465 EYDLHHILQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGN-----KWDYMILDEGHL 519
Query: 555 IKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRF-----LRIEPWGHWAWWNR 609
IK+ +Q + + + + R ++GTPIQNNL+++++L F L + W + +
Sbjct: 520 IKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHY 579
Query: 610 LIQKPFEGGDERGLKLVQSILK-------PIMLRRTKNSTDREGKPILVLPPADMQIIYC 662
+++ + +R ++ ++ K P LRR K+ + L D +++
Sbjct: 580 ILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWL 639
Query: 663 EPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRG 720
T ++ YEA F S++ F S L L L++ CDHP L+ R
Sbjct: 640 RLTACQRQLYEA-FLNSEIVLSAFD---------GSPLAALTILKKICDHPLLLTKRA 687
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 24/260 (9%)
Query: 467 GCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKSLAQS------DVVITT 520
G L++CP+++ W EI + YV R KS+ DV++TT
Sbjct: 102 GPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTT 161
Query: 521 YGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQV-SMAAAALIADKRWCLTG 579
Y + + L I W ++DEA +K+ S + ++ + +R +TG
Sbjct: 162 YDIALV--------DQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITG 213
Query: 580 TPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEG----GDERGLKLVQSILKPIML 635
TPIQNNL ++++L+ F +G + ++ +G D+ K ++ IL ML
Sbjct: 214 TPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLDVSNDKETYKSLKFILGAFML 273
Query: 636 RRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHN 695
RRTK+ G LVLPP + +K Y ++ ++ + G N
Sbjct: 274 RRTKSLLIESGN--LVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGS---N 328
Query: 696 YASILELLLRLRQCCDHPFL 715
+ S+ ++++LR+ C HP+L
Sbjct: 329 HTSLQNIVIQLRKACSHPYL 348
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 78/347 (22%)
Query: 389 KGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKA 448
+G ILAD MGLGKTI I+ L S ++ P
Sbjct: 233 EGAILADEMGLGKTIQAITYLTLLS--------------------------RLNNDP--- 263
Query: 449 SKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRP--- 505
G L++CP ++L W+ E+ S ++ ++G +R
Sbjct: 264 ------------------GPHLVVCPASVLENWERELRKWCP--SFTVLQYHGAARAAYS 303
Query: 506 RDAKSLAQS------DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSK 559
R+ SL+++ +V++ Y L S + ++ L RW V++DEAH +K
Sbjct: 304 RELNSLSKAGKPPPFNVLLVCYS-LFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKN 362
Query: 560 SQ--VSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEG 617
S ++ + A A++R LTGTP+QN+L +++SLL F+ + + N ++K
Sbjct: 363 SYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDI---FTTENVDLKKLLNA 419
Query: 618 GDERGLKLVQSILKPIMLRRTKNSTDREGKPIL-----VLPPADMQIIYCEPTDAEKDFY 672
D + ++SIL P +LRR K+ ++ P + VL + Y E + +
Sbjct: 420 EDTELITRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAAS 479
Query: 673 EA-LFKRSKVKFDQFVEQ--GRVLHNYASILELLLRLRQCCDHPFLV 716
+A L K S + + R + NY + + R+ +HP L+
Sbjct: 480 QARLVKLSSKSLNSLAKALPKRQISNYFT------QFRKIANHPLLI 520
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 33/269 (12%)
Query: 467 GCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKSLAQS------------ 514
G L++CP+++ W EI + YV R KS+
Sbjct: 102 GPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPF 161
Query: 515 DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQV-SMAAAALIADK 573
DV++TTY + + L I W ++DEA +K+ S + ++ + +
Sbjct: 162 DVLLTTYDIALV--------DQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPR 213
Query: 574 RWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEG-------GDERGLKLV 626
R +TGTPIQNNL ++++L+ F +G + ++ +G D+ K +
Sbjct: 214 RLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSL 273
Query: 627 QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQF 686
+ IL MLRRTK+ G LVLPP + +K Y ++ ++ +
Sbjct: 274 KFILGAFMLRRTKSLLIESGN--LVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLEL 331
Query: 687 VEQGRVLHNYASILELLLRLRQCCDHPFL 715
G N+ S+ ++++LR+ C HP+L
Sbjct: 332 SSGG---SNHTSLQNIVIQLRKACSHPYL 357
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 106/208 (50%), Gaps = 33/208 (15%)
Query: 515 DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKR 574
+V++TTY ++ ++ S+ L + W +V+DE H +K+S+S++ R
Sbjct: 802 NVLLTTYEMVLADSSH--------LRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHR 853
Query: 575 WCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQSILKPIM 634
LTGTP+QNN+ ++Y+LL FL+ + + + ++ + ++ ++ ++ P M
Sbjct: 854 VLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFE---ERFHDLTSAEKVEELKKLVAPHM 910
Query: 635 LRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLH 694
LRR K + +PP +++ E T + ++Y A+ ++ ++L
Sbjct: 911 LRRLKKDA------MQNIPPKTERMVPVELTSIQAEYYRAMLTKNY----------QILR 954
Query: 695 NYA------SILELLLRLRQCCDHPFLV 716
N S+L ++++LR+ C+HP+L+
Sbjct: 955 NIGKGVAQQSMLNIVMQLRKVCNHPYLI 982
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 136/350 (38%), Gaps = 89/350 (25%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
G ILAD MGLGKT+ +I+LL +L Q
Sbjct: 206 GCILADDMGLGKTLQSITLLY-------TLLCQ--------------------------- 231
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
GFD K A+ I+ P +L+ W+ EI+ V G + +S D
Sbjct: 232 ---GFDGTPMVKKAI------IVTPTSLVSNWEAEIKKWV--GDRIQLIALCESTRDDVL 280
Query: 510 SLAQS--------DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQ 561
S S V+I +Y S S L ++ DEAH +K+ ++
Sbjct: 281 SGIDSFTRPRSALQVLIISYETFRMHSSKFCQSESCDL-------LICDEAHRLKNDQTL 333
Query: 562 VSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG--- 618
+ A A+L +R L+GTP+QN+LE+ ++++ F G A + + P G
Sbjct: 334 TNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREP 393
Query: 619 ----DERGLKL-----VQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEK 669
+E+ L + S + +LRRT LPP ++++ C+ T +
Sbjct: 394 TATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH------LPPKIIEVVCCKMTTLQS 447
Query: 670 DFYEALFKRSKVKFDQFVEQGRVLHNYA---SILELLLRLRQCCDHPFLV 716
Y +K R L + A +L + L++ C+HP L+
Sbjct: 448 TLYNHFISSKNLK--------RALADNAKQTKVLAYITALKKLCNHPKLI 489
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 136/347 (39%), Gaps = 85/347 (24%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
G ILAD MGLGKT+ +I+LL +L Q
Sbjct: 206 GCILADDMGLGKTLQSITLLY-------TLLCQ--------------------------- 231
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAK 509
GFD K A+ I+ P +L+ W+ EI+ V G + +S D
Sbjct: 232 ---GFDGTPMVKKAI------IVTPTSLVSNWEAEIKKWV--GDRIQLIALCESTRDDVL 280
Query: 510 SLAQS--------DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQ 561
S S V+I +Y S S L ++ DEAH +K+ ++
Sbjct: 281 SGIDSFTRPRSALQVLIISYETFRMHSSKFCQSESCDL-------LICDEAHRLKNDQTL 333
Query: 562 VSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG--- 618
+ A A+L +R L+GTP+QN+LE+ ++++ F G A + + P G
Sbjct: 334 TNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREP 393
Query: 619 ----DERGLKL-----VQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEK 669
+E+ L + S + +LRRT LPP ++++ C+ T +
Sbjct: 394 TATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH------LPPKIIEVVCCKMTTLQT 447
Query: 670 DFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLV 716
+ L + K +Q +V L + L++ C+HP L+
Sbjct: 448 TYNGCLCMQLKRALADNAKQTKV-------LAYITALKKLCNHPKLI 487
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 137/349 (39%), Gaps = 85/349 (24%)
Query: 391 GILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASK 450
GILAD MGLGKT+ ++L+ +E
Sbjct: 1002 GILADEMGLGKTVQVMALIAY----------------LME-------------------- 1025
Query: 451 FTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPR--DA 508
F G G LII P +L WK E+ T + S YV R +
Sbjct: 1026 FKG-----------NYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQ 1074
Query: 509 KSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAA 568
+ +V++TTY + + S L + W +++DEA +K +S ++
Sbjct: 1075 VKFEKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRESVLARDLDR 1126
Query: 569 LIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGD--------- 619
+R LTGTP+QN+L++++SLL L + + + ++ +PF+
Sbjct: 1127 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDW 1186
Query: 620 -ERGLKLV-----QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYE 673
E K++ IL+P MLRR D EG LP ++ C + + Y+
Sbjct: 1187 LETEKKVIVIHRLHQILEPFMLRR--RVEDVEGS----LPAKVSVVLRCRMSAIQSAVYD 1240
Query: 674 ALFKRSKVKFDQFVEQGRVLHN-------YASILELLLRLRQCCDHPFL 715
+ ++ D E+ R N Y ++ + LR+ C+HP L
Sbjct: 1241 WIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL 1289
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 139/353 (39%), Gaps = 92/353 (26%)
Query: 391 GILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASK 450
GILAD MGLGKT+ ++L+ +E
Sbjct: 1002 GILADEMGLGKTVQVMALIAY----------------LME-------------------- 1025
Query: 451 FTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKS 510
F G G LII P +L WK E+ T + S YV R +K
Sbjct: 1026 FKG-----------NYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQR---SKL 1071
Query: 511 LAQS------DVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSM 564
+Q +V++TTY + + S L + W +++DEA +K +S ++
Sbjct: 1072 FSQEVCAMKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRESVLAR 1123
Query: 565 AAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGD----- 619
+R LTGTP+QN+L++++SLL L + + + ++ +PF+
Sbjct: 1124 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNI 1183
Query: 620 -----ERGLKLV-----QSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEK 669
E K++ IL+P MLRR D EG LP ++ C + +
Sbjct: 1184 EDDWLETEKKVIVIHRLHQILEPFMLRR--RVEDVEGS----LPAKVSVVLRCRMSAIQS 1237
Query: 670 DFYEALFKRSKVKFDQFVEQGRVLHN-------YASILELLLRLRQCCDHPFL 715
Y+ + ++ D E+ R N Y ++ + LR+ C+HP L
Sbjct: 1238 AVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL 1290
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/375 (21%), Positives = 134/375 (35%), Gaps = 118/375 (31%)
Query: 390 GGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKAS 449
GGI+ D MGLGKTI +S L GSL +FS + K
Sbjct: 405 GGIIGDEMGLGKTIQVLSFL-------GSL--------------------HFSKMYKP-- 435
Query: 450 KFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQS------ 503
S+IICP+TLL QW+ E + + + Q
Sbjct: 436 -------------------SIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKG 476
Query: 504 ---------------------RPRDAKSL---------AQSDVVITTYGVLASEFSNENA 533
+ ++ K ++S ++ITTY L +
Sbjct: 477 QGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEK--- 533
Query: 534 ENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLL 593
L +I W VLDE H I++ S +++ L R +TG PIQN L +++SL
Sbjct: 534 -----LLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLF 588
Query: 594 RFLRIEPWGHWAWWNRLIQKPFEGGD------------ERGLKLVQSILKPIMLRRTKNS 641
F+ G + P G R +++ ++ P +LRR K
Sbjct: 589 DFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD 648
Query: 642 TDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILE 701
+ L +++C T ++ Y A S+V+ ++ + L
Sbjct: 649 VNAH------LTKKTEHVLFCSLTVEQRSTYRAFLASSEVE--------QIFDGNRNSLY 694
Query: 702 LLLRLRQCCDHPFLV 716
+ +R+ C+HP L+
Sbjct: 695 GIDVMRKICNHPDLL 709
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 469 SLIICPMTLLGQWKVEIE----THVSPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVL 524
+LI+ P+ +L W+ E E + V P L +++ SR R L + GV
Sbjct: 782 ALIVTPVNVLHNWRSEFEKWMPSEVKP--LRIFMLGDVSRERRFDLLTKWR---KKGGVF 836
Query: 525 ASEFSN-ENAENSGGLFSIRWFR------------VVLDEAHTIKSSKSQVSMAAAALIA 571
++N N G+ + R +V DEAH IK++K+ + A +
Sbjct: 837 LMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKC 896
Query: 572 DKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG 618
+R LTG+P+QNNL + Y ++ F+R G + Q P E G
Sbjct: 897 QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENG 943
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 469 SLIICPMTLLGQWKVEIE----THVSPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVL 524
+LI+ P+ +L W+ E E + V P L +++ SR R L + GV
Sbjct: 782 ALIVTPVNVLHNWRSEFEKWMPSEVKP--LRIFMLGDVSRERRFDLLTKWR---KKGGVF 836
Query: 525 ASEFSN-ENAENSGGLFSIRWFR------------VVLDEAHTIKSSKSQVSMAAAALIA 571
++N N G+ + R +V DEAH IK++K+ + A +
Sbjct: 837 LMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKC 896
Query: 572 DKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG 618
+R LTG+P+QNNL + Y ++ F+R G + Q P E G
Sbjct: 897 QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENG 943
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 469 SLIICPMTLLGQWKVEIE----THVSPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVL 524
+LI+ P+ +L W+ E E + V P L +++ SR R L + GV
Sbjct: 782 ALIVTPVNVLHNWRSEFEKWMPSEVKP--LRIFMLGDVSRERRFDLLTKWR---KKGGVF 836
Query: 525 ASEFSN-ENAENSGGLFSIRWFR------------VVLDEAHTIKSSKSQVSMAAAALIA 571
++N N G+ + R +V DEAH IK++K+ + A +
Sbjct: 837 LMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKC 896
Query: 572 DKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG 618
+R LTG+P+QNNL + Y ++ F+R G + Q P E G
Sbjct: 897 QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENG 943
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 469 SLIICPMTLLGQWKVEIE----THVSP------GSLSLYVHYGQSRPRDAKSLAQSDVVI 518
+LI+ P+ +L W+ E E + V P G +S Y + + K L + +
Sbjct: 782 ALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRYKFFYERNFWGVKDLNAARGIC 841
Query: 519 TTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLT 578
NA G +V DEAH IK++K+ + A + +R LT
Sbjct: 842 -------------NALRDGPDI------LVCDEAHIIKNTKADTTQALKQVKCQRRIALT 882
Query: 579 GTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGG 618
G+P+QNNL + Y ++ F+R G + Q P E G
Sbjct: 883 GSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENG 922