Miyakogusa Predicted Gene

Lj0g3v0004639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004639.1 Non Chatacterized Hit- tr|I1HGE5|I1HGE5_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,75,0.012,no
description,Nucleotide-binding, alpha-beta plait; zf-CCCH,Zinc finger,
CCCH-type; RRM_5,NULL; zin,CUFF.294.1
         (318 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   313   1e-85
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   313   1e-85
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   310   9e-85
AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   209   2e-54
AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   115   4e-26
AT3G44785.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   105   4e-23

>AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 145/186 (77%), Positives = 164/186 (88%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD  GQP+DP +IQDH            +K+G++ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRQLFG 186
           RR+LFG
Sbjct: 181 RRKLFG 186


>AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 145/186 (77%), Positives = 164/186 (88%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD  GQP+DP +IQDH            +K+G++ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRQLFG 186
           RR+LFG
Sbjct: 181 RRKLFG 186


>AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615152-9616042 FORWARD
           LENGTH=296
          Length = 296

 Score =  310 bits (794), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD  GQP+DPR+IQ+H             K+G+IESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
            A  A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615302-9616042 FORWARD
           LENGTH=246
          Length = 246

 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 112/135 (82%)

Query: 51  MYQRPDMITPGVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVG 110
           MYQRPDMITPGVD  GQP+DPR+IQ+H             K+G+IESLN+CDNLADHM+G
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEEHAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
           NVYVQF+EE+ A  A++ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHLKRISRELRRQLF 185
           MH+K +SRELRR+LF
Sbjct: 121 MHVKLVSRELRRKLF 135


>AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:3384164-3388373 REVERSE LENGTH=757
          Length = 757

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 5/167 (2%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITPGVDVHGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S T+L+ NMY  P  IT   D  G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 294

Query: 69  IDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEEHAGNAVRN 128
                 +               KYG++ +  VC N + H+ GNVYV +R  E A  A ++
Sbjct: 295 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 354

Query: 129 LTGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMH 172
           + GR++AG+ +  +F  ++ ++ A C +Y ++   TC+RG  CNF+H
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401


>AT3G44785.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type
          family protein | chr3:16328221-16328448 REVERSE
          LENGTH=75
          Length = 75

 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 58/73 (79%)

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+TKPSISPT+LLSN YQ+  +   
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60

Query: 61 GVDVHGQPIDPRR 73
             V  +  DP++
Sbjct: 61 LDPVQSREKDPKK 73