Miyakogusa Predicted Gene

Lj0g3v0004399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004399.1 tr|A9RZV6|A9RZV6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_179856,53.33,3e-17,ACETYLTRANSFERASE-RELATED,NULL,
gene.g348.t1.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45670.1 | Symbols:  | calcineurin B subunit-related | chr2:1...   160   1e-40
AT2G45670.2 | Symbols:  | calcineurin B subunit-related | chr2:1...   159   4e-40

>AT2G45670.1 | Symbols:  | calcineurin B subunit-related |
           chr2:18815070-18818382 REVERSE LENGTH=539
          Length = 539

 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 91/130 (70%), Gaps = 19/130 (14%)

Query: 2   LARLVLFGLCLAVGFVATKLALYGWKDKENPMPVW-------------------SYQWIK 42
           L RLVLF   LAVG++ATKLAL GWKDKENPMP+W                    YQWI+
Sbjct: 101 LIRLVLFAASLAVGYLATKLALAGWKDKENPMPLWRCRIMWITRICTRCILFSFGYQWIR 160

Query: 43  RKGRPAPRGIAPIIVSNHVSYIEPIFYFYELFATIVASESHDSLPFVGTIIRAMQVLTII 102
           RKG+PA R IAPI+VSNHVSYIEPIFYFYEL  TIVASESHDSLPFVGTIIRAMQV+ + 
Sbjct: 161 RKGKPARREIAPIVVSNHVSYIEPIFYFYELSPTIVASESHDSLPFVGTIIRAMQVIYVN 220

Query: 103 KEESYKRNKG 112
           +     R   
Sbjct: 221 RFSQTSRKNA 230


>AT2G45670.2 | Symbols:  | calcineurin B subunit-related |
           chr2:18817080-18818382 REVERSE LENGTH=281
          Length = 281

 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 91/130 (70%), Gaps = 19/130 (14%)

Query: 2   LARLVLFGLCLAVGFVATKLALYGWKDKENPMPVW-------------------SYQWIK 42
           L RLVLF   LAVG++ATKLAL GWKDKENPMP+W                    YQWI+
Sbjct: 101 LIRLVLFAASLAVGYLATKLALAGWKDKENPMPLWRCRIMWITRICTRCILFSFGYQWIR 160

Query: 43  RKGRPAPRGIAPIIVSNHVSYIEPIFYFYELFATIVASESHDSLPFVGTIIRAMQVLTII 102
           RKG+PA R IAPI+VSNHVSYIEPIFYFYEL  TIVASESHDSLPFVGTIIRAMQV+ + 
Sbjct: 161 RKGKPARREIAPIVVSNHVSYIEPIFYFYELSPTIVASESHDSLPFVGTIIRAMQVIYVN 220

Query: 103 KEESYKRNKG 112
           +     R   
Sbjct: 221 RFSQTSRKNA 230