Miyakogusa Predicted Gene

Lj0g3v0004369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004369.1 Non Chatacterized Hit- tr|I1JCC5|I1JCC5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22835
PE,87.28,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; CONSERVED OLIGOMERIC
GOLGI COMPLEX COMPONENT 8,Dor1-like protein,CUFF.284.1
         (458 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11980.1 | Symbols:  | conserved oligomeric Golgi complex com...   690   0.0  

>AT5G11980.1 | Symbols:  | conserved oligomeric Golgi complex
           component-related / COG complex component-related |
           chr5:3868809-3872146 REVERSE LENGTH=569
          Length = 569

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/436 (75%), Positives = 372/436 (85%), Gaps = 6/436 (1%)

Query: 1   MNQTMLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVGKLSTMHPKLPIIQDLAAE 60
           MNQ +L+NHSTLLDLLEIPQLMDTCVRNGN+DEALDLEA+V KL+T+HPKLP+IQ LAAE
Sbjct: 120 MNQALLANHSTLLDLLEIPQLMDTCVRNGNFDEALDLEAFVSKLATLHPKLPVIQALAAE 179

Query: 61  VXXXXXXXXXXXXXXXXXNIQLPECLRIIGYLRRIGVFSEYGMRLLFLRCREAWLTGLLE 120
           V                 NIQLPECLRIIGYLRRIGVF EY MRL FLRCREAWLTG+LE
Sbjct: 180 VRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFGEYEMRLQFLRCREAWLTGILE 239

Query: 121 DLDQTNPYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITTH 180
           DLDQ N YEYLKGMINCHRMHLFDVVNQYRAIF+DDTSGSEENYDGGLLFSWAMHQIT+H
Sbjct: 240 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFSDDTSGSEENYDGGLLFSWAMHQITSH 299

Query: 181 LQTLKLMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPSLFEEAVLNLFSKNMST 240
           L+TLK+MLPKITEGGSLSNILDQCMYCAMGLG VGLDFRGLLP LFEEAVLNLFSKNMST
Sbjct: 300 LKTLKIMLPKITEGGSLSNILDQCMYCAMGLGGVGLDFRGLLPPLFEEAVLNLFSKNMST 359

Query: 241 AVENFQLVLDSHRWVPLPAVGF-SNSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNE 299
           AVENFQLVLDSHRWVPLP+VGF S+ + E+S++DVTPPSYLMEHPPLAVFINGVS+A+NE
Sbjct: 360 AVENFQLVLDSHRWVPLPSVGFPSSGINEDSKDDVTPPSYLMEHPPLAVFINGVSSALNE 419

Query: 300 LRPCAPISLKHVLAQELVKGLQAVSDSLLLYNTTRVLRANESGLFLSLCRAFIEVAYPHS 359
           LRPCAP+SLK+V+A EL+KGLQAVSDSLL YNTTR+LR +ES LFLSLCRAF+EV +PH 
Sbjct: 420 LRPCAPLSLKNVVAHELIKGLQAVSDSLLRYNTTRMLRLSESNLFLSLCRAFVEVVFPHC 479

Query: 360 ATSFGRCYPGGATVIMEAKDVYQGISRLLEASSARE----LPKPVKNVEISSVAENGELP 415
           AT FGRCYPGGAT++M+AK  Y+G+ R+L ASS++E     PK V + +    +ENG   
Sbjct: 480 ATCFGRCYPGGATIVMDAKSAYEGLGRILAASSSQEPSNKSPK-VISTDTKDASENGVAS 538

Query: 416 KMENGETPDANANESE 431
           + E  +  + NA E +
Sbjct: 539 QPEEKQAENPNAKEED 554