Miyakogusa Predicted Gene

Lj0g3v0004279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004279.1 tr|G7LCG1|G7LCG1_MEDTR ATP-dependent RNA helicase
A-like protein OS=Medicago truncatula
GN=MTR_8g106,45.76,2e-19,Double-stranded RNA binding
motif,Double-stranded RNA-binding; DS_RBD,Double-stranded RNA-binding;
n,CUFF.273.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   225   7e-60
AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   110   2e-25
AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   107   2e-24
AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    96   7e-21

>AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein |
            chr5:1428796-1434516 FORWARD LENGTH=1161
          Length = 1161

 Score =  225 bits (574), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 126/144 (87%), Gaps = 7/144 (4%)

Query: 1    MLAVQELVSGDQCEGRFVFGRASRKP-RASNDENKFTKDGTNPKSLLQTLLMRAGHSPPN 59
            MLAVQELV+GDQCEGRFVFGR +++P +    ENK +KDGTNPKSLLQTLLMRAGHSPP 
Sbjct: 1018 MLAVQELVAGDQCEGRFVFGRDTKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPK 1077

Query: 60   YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENA--QH-EDD 116
            YKTKHLKTNEFRALVEFKGMQFVGKP+RNK LAE+DAAVEALAWLTHTS+N+  QH ED 
Sbjct: 1078 YKTKHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTGQHNEDA 1137

Query: 117  KSPPDVTDNMLKLLGKRNKSKRRS 140
             SPPDVTDNMLKLLG R   +RRS
Sbjct: 1138 DSPPDVTDNMLKLLGGR---RRRS 1158


>AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein |
            chr1:17989670-17995169 REVERSE LENGTH=1197
          Length = 1197

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 85/142 (59%), Gaps = 14/142 (9%)

Query: 1    MLAVQELVSGDQCEGRFVFGRASRKPRASNDENKF-----TKDGTNPKSLLQTLLMRAGH 55
            M A++ LVS DQCEGRFV+GR +  P  +              G N K+ LQTLL RAGH
Sbjct: 1055 MTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAGH 1114

Query: 56   SPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHED 115
              P YKT+ LK N+FR++V F G+ F+GKP  +K+ AE+DAA EAL WL       Q E 
Sbjct: 1115 GSPVYKTRQLKNNQFRSMVTFNGLDFMGKPCGSKKNAEKDAAHEALLWL-------QGES 1167

Query: 116  DKSPPDVTDNMLKLLGKRNKSK 137
              S  D+  N + +L K+NKSK
Sbjct: 1168 KSSLNDL--NHMSMLLKKNKSK 1187


>AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family protein |
            chr1:17989517-17995169 REVERSE LENGTH=1206
          Length = 1206

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 84/142 (59%), Gaps = 14/142 (9%)

Query: 1    MLAVQELVSGDQCEGRFVFGRASRKPRASNDENKF-----TKDGTNPKSLLQTLLMRAGH 55
            M A++ LVS DQCEGRFV+GR +  P  +              G N K+ LQTLL RAGH
Sbjct: 1055 MTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAGH 1114

Query: 56   SPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHED 115
              P YKT+ LK N+FR++V F G+ F+GKP  +K+ AE+DAA EAL WL       Q E 
Sbjct: 1115 GSPVYKTRQLKNNQFRSMVTFNGLDFMGKPCGSKKNAEKDAAHEALLWL-------QGES 1167

Query: 116  DKSPPDVTDNMLKLLGKRNKSK 137
              S  D+  N + +L K+NK +
Sbjct: 1168 KSSLNDL--NHMSMLLKKNKKR 1187


>AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein |
            chr2:88847-94635 REVERSE LENGTH=1113
          Length = 1113

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 81/142 (57%), Gaps = 17/142 (11%)

Query: 3    AVQELVSGDQCEGRFVFGRASRKP----RASNDENKFTKD-----GTNPKSLLQTLLMRA 53
            A++ LVS D C+GRFVFG    +P      S   + F++      G N KS LQT+L RA
Sbjct: 977  AIRLLVSEDGCDGRFVFGHQILRPLEISALSTKPSLFSRTESGPGGDNSKSQLQTILTRA 1036

Query: 54   GHSPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQH 113
            G++ P YKTK LK N+F+  VEF   Q +G+P  NK+ AE+DAA EA+ WL   ++ +  
Sbjct: 1037 GYTVPMYKTKQLKNNKFQTTVEFNETQIMGQPCSNKKSAEKDAAAEAIQWLKGGAKESHE 1096

Query: 114  EDDKSPPDVTDNMLKLLGKRNK 135
            +         ++M KLL K  K
Sbjct: 1097 Q--------VNHMSKLLKKGKK 1110