Miyakogusa Predicted Gene

Lj0g3v0004189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004189.1 tr|G7L707|G7L707_MEDTR Vacuolar protein sorting
protein OS=Medicago truncatula GN=MTR_8g044150 PE=4
,83.07,0,EAP30,EAP30; Vps36_ESCRT-II,Vacuolar protein sorting protein
36, GLUE domain; GLUE,Vacuolar protein ,CUFF.275.1
         (447 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04920.1 | Symbols:  | EAP30/Vps36 family protein | chr5:1439...   509   e-144

>AT5G04920.1 | Symbols:  | EAP30/Vps36 family protein |
           chr5:1439172-1441545 REVERSE LENGTH=440
          Length = 440

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/441 (57%), Positives = 309/441 (70%), Gaps = 16/441 (3%)

Query: 3   GNCLPAVKLTGSGRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSGXXXXXXXXXXXX 62
           G      ++T SGRPVL  NE+ECF LS +D+  ED+P   F  L+SG            
Sbjct: 11  GGLFENAEVTTSGRPVLRRNEVECFLLSSIDIDSEDDPPR-FTALRSGNLILTTHRLIWI 69

Query: 63  PEPADGGTSSAVHLAAISHIFPHKKSLKSVFASPRVRFQVSPSPEGGVAASGSRSVVATI 122
           P  ++    S++ L+A++HI+ HKKS+KS+F SPR+RFQ  P            S+V TI
Sbjct: 70  PSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQADPG-----------SIVVTI 118

Query: 123 VVRGKGEFDAFVAKFXXXXXXXXXXXXXSGQXXXXXXXXXXXXXXXXXXIYGRDGTVRMV 182
           V RGKG+FD F++K                                   +YG DGTVRMV
Sbjct: 119 VFRGKGDFDGFLSKLWECWRGRAWEEEEK----SESETSKSGSGTVAQGLYGNDGTVRMV 174

Query: 183 GVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLLSGSNSQTNATN 242
           G++GILRKEQE WESTDKSLQDAFQDLNALMSKAKEMV LAEKMRQKLLS  +SQ  +T+
Sbjct: 175 GLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQNGSTD 234

Query: 243 EEEMGTKEEMQDWLLSVGIISPVTKESAGAMYHQQLSRQLADFVKVPLERAGGIINLIDI 302
           +EEMG+KEEMQ W+LSVGIISPVTKESAGA+YHQ+LSRQLADFV++PLE+AGG+I+L D+
Sbjct: 235 DEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMISLTDM 294

Query: 303 YCLFNRARGTELISPDDLLQACSLWEKFDVPVVLRKFDRGVMVIQTKSHSDEEVFAKIKV 362
           Y  FNRARGTELISPDDL QAC+LWEKFDVPV+LRKFD GVMVIQ KSHSDEEV ++I++
Sbjct: 295 YYHFNRARGTELISPDDLWQACTLWEKFDVPVMLRKFDSGVMVIQNKSHSDEEVMSRIRM 354

Query: 363 LVMKPDALRAGISASDXXXXXXXXXXXXKEHLLSAESKGILCRDISPDGFRFYINLFPEI 422
           LV K + LR G++ASD            KEHLLSAE+KG+LCRD+SPDG RFY NLFPEI
Sbjct: 355 LVTKTETLRVGVTASDAALTLKIAPAMAKEHLLSAETKGLLCRDMSPDGLRFYFNLFPEI 414

Query: 423 DRDDMHVVKDQGIYASWVSAN 443
           D  ++H+VK+ G Y  W+ A 
Sbjct: 415 DPTNLHIVKEFGTYGEWIKAT 435