Miyakogusa Predicted Gene

Lj0g3v0002119.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0002119.3 Non Chatacterized Hit- tr|I1LKQ8|I1LKQ8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35313
PE,83.64,7e-19,GTPase activation domain, GAP,Rho GTPase activation
protein; no description,Rho GTPase-activating pr,CUFF.124.3
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11490.1 | Symbols:  | rac GTPase activating protein | chr3:3...    86   1e-17
AT5G22400.1 | Symbols:  | Rho GTPase activating protein with PAK...    85   2e-17
AT1G08340.1 | Symbols:  | Rho GTPase activating protein with PAK...    82   1e-16
AT2G46710.1 | Symbols:  | Rho GTPase activating protein with PAK...    82   2e-16
AT4G03100.1 | Symbols:  | Rho GTPase activating protein with PAK...    77   5e-15

>AT3G11490.1 | Symbols:  | rac GTPase activating protein |
           chr3:3617523-3619567 REVERSE LENGTH=435
          Length = 435

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 45/55 (81%)

Query: 32  ATMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           AT+FGVSTESMQLSYDTRGN VP ILL MQ HLY++GGL+ EGIF IN +N   E
Sbjct: 133 ATVFGVSTESMQLSYDTRGNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEE 187



 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 85  TEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           TEASLLDWAINLM DVV+ E L+KMNA NIAMV
Sbjct: 250 TEASLLDWAINLMADVVEMEQLNKMNARNIAMV 282


>AT5G22400.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr5:7423050-7425335
           REVERSE LENGTH=466
          Length = 466

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 46/56 (82%)

Query: 32  ATMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTEA 87
           AT+FGVSTESMQLSYD+RGN VP ILL MQ  LY+QGGLQAEGIF +  +N+  EA
Sbjct: 157 ATVFGVSTESMQLSYDSRGNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEA 212



 Score = 60.1 bits (144), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query: 85  TEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           TEA+LLDWAINLM DVVQ EHL+KMN+ NIAMV
Sbjct: 274 TEAALLDWAINLMADVVQYEHLNKMNSRNIAMV 306


>AT1G08340.1 | Symbols:  | Rho GTPase activating protein with
          PAK-box/P21-Rho-binding domain | chr1:2631308-2632669
          FORWARD LENGTH=331
          Length = 331

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 17 NAPHYLPTMKKLRHLATMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIF 76
          + P   P+       AT+FGVSTESMQLSYD+RGN VP ILL +Q  LY QGGLQAEG+F
Sbjct: 33 DVPRKAPSAS-----ATVFGVSTESMQLSYDSRGNCVPVILLLLQSRLYDQGGLQAEGVF 87

Query: 77 IINTDNTHTE 86
           I  +N+  E
Sbjct: 88 RITGENSEEE 97



 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 30/34 (88%)

Query: 84  HTEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
            TEASLL+WAINLM DV+Q EH++KMN+ N+A+V
Sbjct: 159 QTEASLLNWAINLMADVIQFEHVNKMNSRNLALV 192


>AT2G46710.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr2:19192105-19194656
           FORWARD LENGTH=455
          Length = 455

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 43/54 (79%)

Query: 33  TMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           ++FGVS +SMQ SYD RGNSVP ILL+MQ+ LY +GGL+AEGIF IN DN   E
Sbjct: 146 SVFGVSAKSMQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEE 199



 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 86  EASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           E+++LDWAI LM DVV+ E  +KMNA N+AMV
Sbjct: 263 ESAILDWAIGLMADVVEHEQFNKMNARNVAMV 294


>AT4G03100.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr4:1374361-1375913
           FORWARD LENGTH=430
          Length = 430

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 42/54 (77%)

Query: 33  TMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           ++FGVS ESMQ SYD +GNSVP ILL MQ  LY+Q GL+AEGIF IN +N+  E
Sbjct: 121 SVFGVSAESMQCSYDEKGNSVPTILLLMQERLYSQQGLKAEGIFRINPENSQEE 174