Miyakogusa Predicted Gene

Lj0g3v0001919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0001919.1 Non Chatacterized Hit- tr|I0YVH7|I0YVH7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,50,0.00000000000006,BRCA2_REPEAT,BRCA2 repeat; SUBFAMILY NOT
NAMED,NULL; BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRC,CUFF.107.1
         (536 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2-like...   246   3e-65
AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | BREAST ...   245   7e-65
AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | BREAST ...   210   2e-54

>AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2-like B
           | chr5:235117-240911 REVERSE LENGTH=1155
          Length = 1155

 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 174/478 (36%), Positives = 242/478 (50%), Gaps = 38/478 (7%)

Query: 72  GFG--NSLFKTGSGKRVTISSTGLVRAKTLLGLKEDAVGSTVLSPQHRIGEAHDGKXXXX 129
           GFG  NSLF+T S K+V +SS GL RAK LLGL+ED      L+  + + ++        
Sbjct: 162 GFGVPNSLFQTASNKKVNVSSAGLARAKALLGLEEDD-----LNGFNHVNQSSSSLQQHG 216

Query: 130 XXXXXXXXHGVKESCKIMSAVPFQ-SPLVSGRGSSTLENGFEPDTCGAAVKPAPIKFQTA 188
                          K  S  P Q    VSG+ S  L           ++K  P KFQTA
Sbjct: 217 WSGLKTHEEFDATVVKHHSGTPGQYENYVSGKRSEIL---------NPSLKVPPTKFQTA 267

Query: 189 GGRSLSISNDALRRARXXXXXXXXXXXXXXXXXXXXXXXXPDTRQTNAASPCERSAFSTP 248
           GG+SLS+S +AL+RAR                            + +  +    S  +  
Sbjct: 268 GGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQFFTPQKDERLSDIAINNGSVNTGY 327

Query: 249 LIHHVTSGNNDKMKSFTYPLQSSRQQTEFSTKFLCEGNGDNLIMKFDAVGNE-----NVS 303
           + H   + N     SF  PL SS +Q   S       +G NLI KFD   +E     N+S
Sbjct: 328 IAHEEKTSNKHTSNSFVSPLHSSSKQFR-SVNLENLASGGNLIKKFDTAVDETNCALNIS 386

Query: 304 SRKSSNVCGQKPLHDRNERADQAAYHSSLTGFSSKIDSCGVPVGGRPLVDISNTINTAHP 363
              +  +   +PL      +D A  +S   GF  +    G P   +PLVDI+N  +TA+ 
Sbjct: 387 KPATHGLSNNRPL-----ASDMAVNNSKGNGFIPRARQLGRP-ADQPLVDITNRRDTAYA 440

Query: 364 NNRLPASGKRRLGLRVIASPFKKPRNSQVFADQEVENFPNASGAS-------ECKKKVST 416
           NN+  ++ K+RLG  V  SPFK+PR S      +      +SG S         KK +ST
Sbjct: 441 NNKQDSTQKKRLGKTVSVSPFKRPRISSFKTPLKKNAQQASSGLSVVSCDTLTSKKVLST 500

Query: 417 RYPFQYPRMHIKDYFAVPP--LQQEVHFPNPVGQVTSGNAEKYMFCDGSGNNGMGAEAFV 474
           RYP + PR++IK++F + P    +  + P+ V ++ S NA+KY+FCD S +N +GAE F+
Sbjct: 501 RYPEKSPRVYIKEFFGMHPTATTRMDYVPDHVRRIKSSNADKYVFCDESSSNKVGAETFL 560

Query: 475 NLLAQHGTSLHFASKEWVLNHYKWIVWKLACYERCNPAKHAGKFLTVSNVLEELKYRY 532
            +LA+ G SL  AS++WV NHY+WIVWKLACY+   PAK  G FLT++NVLEELKYRY
Sbjct: 561 QMLAESGASLQHASRKWVTNHYRWIVWKLACYDIYYPAKCRGNFLTITNVLEELKYRY 618


>AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | BREAST
           CANCER 2 like 2A | chr4:4107-10364 REVERSE LENGTH=1151
          Length = 1151

 Score =  245 bits (625), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 177/477 (37%), Positives = 247/477 (51%), Gaps = 40/477 (8%)

Query: 72  GFG--NSLFKTGSGKRVTISSTGLVRAKTLLGLKEDAV-GSTVLSPQHRIGEAH--DGKX 126
           GFG  NSLF+T S K+V +SS GL RAK LLGL+ED + G   ++      + H   G  
Sbjct: 162 GFGVSNSLFQTASNKKVNVSSAGLARAKALLGLEEDDLNGFNHVNQSSSSSQQHGWSGLK 221

Query: 127 XXXXXXXXXXXHGVKESCKIMSAVPFQ-SPLVSGRGSSTLENGFEPDTCGAAVKPAPIKF 185
                      H         S  P Q    VSG+ S  L           ++K  P KF
Sbjct: 222 THEEFDATVVKH--------HSGTPGQYEDYVSGKRSEVL---------NPSLKVPPTKF 264

Query: 186 QTAGGRSLSISNDALRRARXXXXXXXXXXXXXXXXXXXXXXXXPDTRQTNAASPCERSAF 245
           QTAGG+SLS+S +AL+RAR                            + +  +    SA 
Sbjct: 265 QTAGGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQFFTPEKDERLSDIAINNGSAN 324

Query: 246 STPLIHHVTSGNNDKMKSFTYPLQSSRQQTEFSTKFLCE-GNGDNLIMKFDAVGNENVSS 304
              + H   + N     SF  PL SS +Q  FS+  L    +G NLI KFDA  +E   +
Sbjct: 325 RGYIAHEEKTSNKHTPNSFVSPLWSSSKQ--FSSVNLENLASGGNLIKKFDAAVDETDCA 382

Query: 305 RKSSNVCGQKPLHDRNERADQAAYHSSLTGFSSKIDSCGVPVGGRPLVDISNTINTAHPN 364
             +++       ++R+  +D A  +S + GF  +    G P   +PLVDI+N  +TA+  
Sbjct: 383 LNATHGLS----NNRSLASDMAVNNSKVNGFIPRGRQPGRP-ADQPLVDITNRRDTAYAY 437

Query: 365 NRLPASGKRRLGLRVIASPFKKPRNSQVFADQEVENFPNASGAS-------ECKKKVSTR 417
           N+  ++ K+RLG  V  SPFK+PR S      +      +SG S         KK +STR
Sbjct: 438 NKQDSTQKKRLGKTVSVSPFKRPRISSFKTPSKKHALQASSGLSVVSCDTLTSKKVLSTR 497

Query: 418 YPFQYPRMHIKDYFAVPPL--QQEVHFPNPVGQVTSGNAEKYMFCDGSGNNGMGAEAFVN 475
           YP + PR++IKD+F + P    +  + P+ V ++ S NA+KY+FCD S +N +GAE F+ 
Sbjct: 498 YPEKSPRVYIKDFFGMHPTATTRMDYVPDHVRRIKSSNADKYVFCDESSSNKVGAETFLQ 557

Query: 476 LLAQHGTSLHFASKEWVLNHYKWIVWKLACYERCNPAKHAGKFLTVSNVLEELKYRY 532
           +LA+ G SL  AS++WV NHY+WIVWKLACY+   PAK  G FLT++NVLEELKYRY
Sbjct: 558 MLAESGASLQHASRKWVTNHYRWIVWKLACYDIYYPAKCRGNFLTITNVLEELKYRY 614


>AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | BREAST
           CANCER 2 like 2A | chr4:2895-10364 REVERSE LENGTH=1187
          Length = 1187

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 237/477 (49%), Gaps = 45/477 (9%)

Query: 72  GFG--NSLFKTGSGKRVTISSTGLVRAKTLLGLKEDAV-GSTVLSPQHRIGEAH--DGKX 126
           GFG  NSLF+T S K+V +SS GL RAK LLGL+ED + G   ++      + H   G  
Sbjct: 162 GFGVSNSLFQTASNKKVNVSSAGLARAKALLGLEEDDLNGFNHVNQSSSSSQQHGWSGLK 221

Query: 127 XXXXXXXXXXXHGVKESCKIMSAVPFQ-SPLVSGRGSSTLENGFEPDTCGAAVKPAPIKF 185
                      H         S  P Q    VSG+ S  L           ++K  P KF
Sbjct: 222 THEEFDATVVKH--------HSGTPGQYEDYVSGKRSEVL---------NPSLKVPPTKF 264

Query: 186 QTAGGRSLSISNDALRRARXXXXXXXXXXXXXXXXXXXXXXXXPDTRQTNAASPCERSAF 245
           QTAGG+SLS+S +AL+RAR                            + +  +    SA 
Sbjct: 265 QTAGGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQFFTPEKDERLSDIAINNGSAN 324

Query: 246 STPLIHHVTSGNNDKMKSFTYPLQSSRQQTEFSTKFLCE-GNGDNLIMKFDAVGNENVSS 304
              + H   + N     SF  PL SS +Q  FS+  L    +G NLI KFDA  +E   +
Sbjct: 325 RGYIAHEEKTSNKHTPNSFVSPLWSSSKQ--FSSVNLENLASGGNLIKKFDAAVDETDCA 382

Query: 305 RKSSNVCGQKPLHDRNERADQAAYHSSLTGFSSKIDSCGVPVGGRPLVDISNTINTAHPN 364
             +++       ++R+  +D A  +S + GF  +    G P   +PLVDI+N  +TA+  
Sbjct: 383 LNATHGLS----NNRSLASDMAVNNSKVNGFIPRGRQPGRP-ADQPLVDITNRRDTAYAY 437

Query: 365 NRLPASGKRRLGLRVIASPFKKPRNSQVFADQEVENFPNASGAS-------ECKKKVSTR 417
           N+  ++ K+RLG  V  SPFK+PR S      +      +SG S         KK +STR
Sbjct: 438 NKQDSTQKKRLGKTVSVSPFKRPRISSFKTPSKKHALQASSGLSVVSCDTLTSKKVLSTR 497

Query: 418 YPFQYPRMHIKDYFAVPPL--QQEVHFPNPVGQVTSGNAEKYMFCDGSGNNGMGAEAFVN 475
           YP + PR++IKD+F + P    +  + P+ V ++ S NA+KY+FCD S +N +GAE F+ 
Sbjct: 498 YPEKSPRVYIKDFFGMHPTATTRMDYVPDHVRRIKSSNADKYVFCDESSSNKVGAETFLQ 557

Query: 476 LLAQHGTSLHFASKEWVLNHYKWIVWKLACYERCNPAKHAGKFLTVSNVLEELKYRY 532
           +LA+       + +  +     WIVWKLACY+   PAK  G FLT++NVLEELKYRY
Sbjct: 558 MLAESEKVCDRSFEACM-----WIVWKLACYDIYYPAKCRGNFLTITNVLEELKYRY 609