Miyakogusa Predicted Gene

Lj0g3v0001899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0001899.1 Non Chatacterized Hit- tr|D0A173|D0A173_TRYB9
Thymidine kinase, putative OS=Trypanosoma brucei
gambi,35.48,1e-17,P-loop containing nucleoside triphosphate
hydrolases,NULL; seg,NULL; TK,Thymidine kinase; THYMIDINE ,CUFF.123.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07800.1 | Symbols:  | Thymidine kinase | chr3:2489944-249093...   263   4e-71
AT5G23070.1 | Symbols:  | Thymidine kinase | chr5:7741979-774282...   236   5e-63

>AT3G07800.1 | Symbols:  | Thymidine kinase | chr3:2489944-2490935
           REVERSE LENGTH=238
          Length = 238

 Score =  263 bits (672), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 140/156 (89%)

Query: 13  GEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWA 72
           G +H+ +GPMF+GK+TSLLRRIKSE+  GR+V MLKSSKDTRYA DSVV+HDG+ FPCWA
Sbjct: 31  GAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTHDGIGFPCWA 90

Query: 73  LPDLMSFKEKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLRR 132
           LPDLMSF EK+G +AY KLDVIGIDEAQFF DLY+FCCK AD DGKIV+VAGLDGDYLRR
Sbjct: 91  LPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVADDDGKIVIVAGLDGDYLRR 150

Query: 133 SFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRKK 168
           SFG+VL IIP+AD+VTKLTARCE+CG +AFFTLRK 
Sbjct: 151 SFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKN 186


>AT5G23070.1 | Symbols:  | Thymidine kinase | chr5:7741979-7742827
           FORWARD LENGTH=282
          Length = 282

 Score =  236 bits (602), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 106/156 (67%), Positives = 137/156 (87%), Gaps = 1/156 (0%)

Query: 13  GEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWA 72
           GEIH+ VGPMF+GKTT+LLRRI +E +TG+ + ++KS+KDTRY  +S+V+HDG K+PCW+
Sbjct: 77  GEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTRYCTESIVTHDGEKYPCWS 136

Query: 73  LPDLMSFKEKYGHEAYQ-KLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLR 131
           LPDL SFKE++G + Y+ +LDVIGIDEAQFF DLY+FC +AAD +GK V+VAGLDGD++R
Sbjct: 137 LPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAADKEGKTVIVAGLDGDFMR 196

Query: 132 RSFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRK 167
           R FGSVL +IP+ADTVTKLT+RCE+CGKRA FT+RK
Sbjct: 197 RRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRK 232