Miyakogusa Predicted Gene
- Lj0g3v0001829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0001829.1 tr|G7LCE0|G7LCE0_MEDTR Heterogeneous nuclear
ribonucleoprotein A1 OS=Medicago truncatula
GN=MTR_8g10,43.68,0.00000000000002,RNA-binding domain, RBD,NULL;
RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding,,CUFF.99.1
(453 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 399 e-111
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 393 e-109
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 302 3e-82
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 302 4e-82
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 296 2e-80
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 296 2e-80
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 283 1e-76
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 271 6e-73
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 271 6e-73
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 268 6e-72
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 268 6e-72
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 204 1e-52
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 197 1e-50
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 194 1e-49
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 168 8e-42
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 151 1e-36
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 148 7e-36
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 145 5e-35
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 136 4e-32
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 132 5e-31
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 132 5e-31
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 86 5e-17
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 82 5e-16
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 9e-14
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 74 3e-13
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 74 3e-13
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 74 3e-13
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 74 3e-13
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 74 3e-13
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 74 3e-13
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 74 3e-13
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 73 3e-13
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 4e-13
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 4e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 72 6e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 72 6e-13
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 9e-13
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 9e-13
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 71 2e-12
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 70 2e-12
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 70 3e-12
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 70 4e-12
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 69 5e-12
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 68 1e-11
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 67 3e-11
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 66 5e-11
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 66 5e-11
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 9e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 65 1e-10
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 65 1e-10
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 65 1e-10
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 65 1e-10
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 65 1e-10
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 65 1e-10
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 65 1e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 65 1e-10
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 64 2e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 64 2e-10
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 64 2e-10
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 64 2e-10
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 63 5e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 63 5e-10
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 63 5e-10
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 62 6e-10
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 62 6e-10
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 62 6e-10
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 62 7e-10
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 62 9e-10
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 62 9e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 62 1e-09
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 61 2e-09
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 60 2e-09
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 8e-09
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 59 1e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 58 1e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 58 1e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 58 1e-08
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 57 2e-08
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 57 2e-08
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 57 3e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 5e-08
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 56 6e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 54 2e-07
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 54 2e-07
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 54 3e-07
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 53 4e-07
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 52 6e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 8e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 8e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 8e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 8e-07
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT2G47310.1 | Symbols: | flowering time control protein-related... 52 1e-06
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 50 5e-06
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 9e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 49 9e-06
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 241/494 (48%), Positives = 318/494 (64%), Gaps = 41/494 (8%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++DN K+FIGGISWDTN+ RL++YFS++G+V+E+VI+KDRTT RARGFGFV F+DPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN--------------GSPG-PYRSTKIFVGGLASTVT 105
E V+ +KH IDG++V+ KKA P++ GSPG P R+ KIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 106 ESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEV 165
ESDFK YF+QFGT D+VVM D NTQRPRGFGFITYDSEEAV+ V L++FHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 166 KRAVPKELSPGPNHSPLSV-YNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIAR 224
KRAVPKELSPGP+ SPL Y+Y ++ VN+ +NG+ QG+ P+ VGGYGL +DG SP+
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 225 GRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYD 284
GR GF + SGYGM+ NF+ L F G N+ ++ RG++P Y ++ RF ++GY+
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 285 XXXXXXXXXXXXX-TQNXXXXXXXXXXXXXANSTAYIGLGGGTVRG-NTIS----NTGV- 337
T+N ++ GG+ G NT+S N+GV
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360
Query: 338 -----GVSLSLSNGNLGF-RGENNNS--GLGIGGY-RRSSDAD-----IPLTSSYSAPNG 383
G + ++SN N+ F G N S GLG GGY R+ A+ +S+ + N
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420
Query: 384 GFD-GPFSEFYSSSSVNDDPIYRSSNFEPDGFDPFGYGLG---VVASDVSAKCSPGYVGS 439
G+D +EFY + +V DP +RS E +G PF YG+G + + SPGYVGS
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480
Query: 440 YTVNKRQPNKGIAT 453
Y+VNKRQPN+GIAT
Sbjct: 481 YSVNKRQPNRGIAT 494
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 238/491 (48%), Positives = 315/491 (64%), Gaps = 41/491 (8%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++DN K+FIGGISWDTN+ RL++YFS++G+V+E+VI+KDRTT RARGFGFV F+DPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN--------------GSPG-PYRSTKIFVGGLASTVT 105
E V+ +KH IDG++V+ KKA P++ GSPG P R+ KIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 106 ESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEV 165
ESDFK YF+QFGT D+VVM D NTQRPRGFGFITYDSEEAV+ V L++FHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 166 KRAVPKELSPGPNHSPLSV-YNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIAR 224
KRAVPKELSPGP+ SPL Y+Y ++ VN+ +NG+ QG+ P+ VGGYGL +DG SP+
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 225 GRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYD 284
GR GF + SGYGM+ NF+ L F G N+ ++ RG++P Y ++ RF ++GY+
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 285 XXXXXXXXXXXXX-TQNXXXXXXXXXXXXXANSTAYIGLGGGTVRG-NTIS----NTGV- 337
T+N ++ GG+ G NT+S N+GV
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360
Query: 338 -----GVSLSLSNGNLGF-RGENNNS--GLGIGGY-RRSSDAD-----IPLTSSYSAPNG 383
G + ++SN N+ F G N S GLG GGY R+ A+ +S+ + N
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420
Query: 384 GFD-GPFSEFYSSSSVNDDPIYRSSNFEPDGFDPFGYGLG---VVASDVSAKCSPGYVGS 439
G+D +EFY + +V DP +RS E +G PF YG+G + + SPGYVGS
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480
Query: 440 YTVNKRQPNKG 450
Y+VNKRQPN+G
Sbjct: 481 YSVNKRQPNRG 491
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 302 bits (774), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 211/487 (43%), Positives = 266/487 (54%), Gaps = 83/487 (17%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+D K+FIGGISWDT++ RL++YF YG ++E+VI++DRTT RARGFGF+ F+DP+VAE
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VLKKKHKIDGKMVDVKKAAPKN--------------------GSPGPYRSTKIFVGGLAS 102
V+ KH IDG+ V+ KKA P++ G+ G R+ KIFVGGL S
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 103 TVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
++TE++FK YFDQFGTI D+VVM D NTQRPRGFGFIT+DSEE+VD V ++FHELNGKM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 163 VEVKRAVPKEL-SPGPNHSPLSVY--NYDL----SGVNSFINGFTQGYCPSNVGGYGLCV 215
VEVKRAVPKEL S PN SPL Y NY + S NS+ N F GY +N+G
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA---- 247
Query: 216 DGTVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSS- 274
G SPI GR F FG G N E LN F GN L SR YF+S+
Sbjct: 248 -GRFSPIGSGRNAFSSFGLGL----NQELNLNSNFDGNT-----LGYSRIPGNQYFNSAS 297
Query: 275 -KRFASSIGYDXXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTIS 333
R+ S IGY+ N + +G+ G RGN
Sbjct: 298 PNRYNSPIGYN---------RGDSAYNPSNRDLWGNRSDSSGPGWNLGVSVGNNRGN--- 345
Query: 334 NTGVGVSLSLSNGNLGFRGENNNSGLGIGGYRRSSDADIPLTS-SYSAPNGGFDGPFSEF 392
G+S +S+ N GY RS A L+ S++ GFDG E
Sbjct: 346 ---WGLSSVVSDNN---------------GYGRSYGAGSGLSGLSFAGNTNGFDGSIGEL 387
Query: 393 YSSSSVNDD-------PIYRSSNFEPDGFD-PFGYGLGVVASDVSAKCSPGYVGSYTVNK 444
Y SSV D P ++SSN E DG +G+G+ V SD SA S GY G+Y V
Sbjct: 388 YRGSSVYSDSTWQQSMPHHQSSN-ELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVGN 446
Query: 445 RQPNKGI 451
RQ ++GI
Sbjct: 447 RQTHRGI 453
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 211/487 (43%), Positives = 266/487 (54%), Gaps = 83/487 (17%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+D K+FIGGISWDT++ RL++YF YG ++E+VI++DRTT RARGFGF+ F+DP+VAE
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 63 VLKKKHKIDGKMVDVKKAAPKN--------------------GSPGPYRSTKIFVGGLAS 102
V+ KH IDG+ V+ KKA P++ G+ G R+ KIFVGGL S
Sbjct: 69 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 128
Query: 103 TVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
++TE++FK YFDQFGTI D+VVM D NTQRPRGFGFIT+DSEE+VD V ++FHELNGKM
Sbjct: 129 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 188
Query: 163 VEVKRAVPKEL-SPGPNHSPLSVY--NYDL----SGVNSFINGFTQGYCPSNVGGYGLCV 215
VEVKRAVPKEL S PN SPL Y NY + S NS+ N F GY +N+G
Sbjct: 189 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA---- 244
Query: 216 DGTVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSS- 274
G SPI GR F FG G N E LN F GN L SR YF+S+
Sbjct: 245 -GRFSPIGSGRNAFSSFGLGL----NQELNLNSNFDGNT-----LGYSRIPGNQYFNSAS 294
Query: 275 -KRFASSIGYDXXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTIS 333
R+ S IGY+ N + +G+ G RGN
Sbjct: 295 PNRYNSPIGYN---------RGDSAYNPSNRDLWGNRSDSSGPGWNLGVSVGNNRGN--- 342
Query: 334 NTGVGVSLSLSNGNLGFRGENNNSGLGIGGYRRSSDADIPLTS-SYSAPNGGFDGPFSEF 392
G+S +S+ N GY RS A L+ S++ GFDG E
Sbjct: 343 ---WGLSSVVSDNN---------------GYGRSYGAGSGLSGLSFAGNTNGFDGSIGEL 384
Query: 393 YSSSSVNDD-------PIYRSSNFEPDGFD-PFGYGLGVVASDVSAKCSPGYVGSYTVNK 444
Y SSV D P ++SSN E DG +G+G+ V SD SA S GY G+Y V
Sbjct: 385 YRGSSVYSDSTWQQSMPHHQSSN-ELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVGN 443
Query: 445 RQPNKGI 451
RQ ++GI
Sbjct: 444 RQTHRGI 450
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/294 (52%), Positives = 198/294 (67%), Gaps = 17/294 (5%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME ++CK+FIGGISW+T++ RLR YF ++G+V+E+VI+KDR T RARGFGFV F+DP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN-------------GSPGPYRSTKIFVGGLASTVTES 107
E V+ KH IDGK+V+ KKA P++ GSPGP S KIFVGGLAS+VTE+
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
+FKKYF QFG I D+VVM D TQRPRGFGFI+YDSEEAVD V ++FHELNGKMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 168 AVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
AVPK+++ + ++V ++ S ++S +N +TQG+ PS + GYG+ + SP R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSI 281
GF FG GYG+ NFEP N S R +P Y S RF S +
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQ----NYGSGSSGGFGRPFSPGYAASLGRFGSQM 290
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/294 (52%), Positives = 198/294 (67%), Gaps = 17/294 (5%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME ++CK+FIGGISW+T++ RLR YF ++G+V+E+VI+KDR T RARGFGFV F+DP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN-------------GSPGPYRSTKIFVGGLASTVTES 107
E V+ KH IDGK+V+ KKA P++ GSPGP S KIFVGGLAS+VTE+
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
+FKKYF QFG I D+VVM D TQRPRGFGFI+YDSEEAVD V ++FHELNGKMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 168 AVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
AVPK+++ + ++V ++ S ++S +N +TQG+ PS + GYG+ + SP R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSI 281
GF FG GYG+ NFEP N S R +P Y S RF S +
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQ----NYGSGSSGGFGRPFSPGYAASLGRFGSQM 290
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 198/316 (62%), Gaps = 39/316 (12%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME ++CK+FIGGISW+T++ RLR YF ++G+V+E+VI+KDR T RARGFGFV F+DP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 EEVLKKKHKIDGKM----------------------VDVKKAAPKN-------------G 85
E V+ KH IDGK+ V+ KKA P++ G
Sbjct: 61 ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120
Query: 86 SPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEE 145
SPGP S KIFVGGLAS+VTE++FKKYF QFG I D+VVM D TQRPRGFGFI+YDSEE
Sbjct: 121 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180
Query: 146 AVDSVFLRSFHELNGKMVEVKRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCP 205
AVD V ++FHELNGKMVEVK AVPK+++ + ++V ++ S ++S +N +TQG+ P
Sbjct: 181 AVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 240
Query: 206 SNVGGYGLCVDGTVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRG 265
S + GYG+ + SP R GF FG GYG+ NFEP N S R
Sbjct: 241 SPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQ----NYGSGSSGGFGRP 296
Query: 266 LNPDYFDSSKRFASSI 281
+P Y S RF S +
Sbjct: 297 FSPGYAASLGRFGSQM 312
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 271 bits (694), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 202/491 (41%), Positives = 254/491 (51%), Gaps = 81/491 (16%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ RLR YFS YG V+E+VI++DR T RARGFGF+ F+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN--------GSP---------GPYRSTKIFVGGLAST 103
E V+ KH IDG+ V+ KKA P++ SP G R+ KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 104 VTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+TE +FK YFDQFGTI D+VVM D NTQRPRGFGFIT+DS++AVD V ++FHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 164 EVKRAVPKELSPGPN-HSPL-SVYNY----DLSGVNSFINGFTQGYCPSNVGGYGLCVDG 217
EVKRAVPKE+SP N SPL S NY + NS+ N F G N
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN---------- 230
Query: 218 TVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVS-----RGLNPDYFD 272
++ P+ GR P+ GSG F LNH+ N N D + S R + YF+
Sbjct: 231 SLGPV--GRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 273 --SSKRFASSIGYDXXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGN 330
S R+ S IG++ N TA G GN
Sbjct: 289 GASPNRYTSPIGHNRTESPYNSNNRDLWGNRT-------------DTAGPGWNLNVSNGN 335
Query: 331 TISNTGVGVSLSLSNGNLGF-RGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPF 389
N G+ S ++SN N GF R +SGL S+P GF+G
Sbjct: 336 NRGNWGLPSSSAVSNDNNGFGRNYGTSSGLS------------------SSPFNGFEGSI 377
Query: 390 SEFYSSSSVNDDPIY------RSSNFEPDGFD-PFGYGLGVVASDVSAKCSPGYVGSYTV 442
E Y SV D + S+ E D +GY + V SD SA Y GSY V
Sbjct: 378 GELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNV 437
Query: 443 NKRQPNKGIAT 453
RQ N+GIA
Sbjct: 438 GNRQTNRGIAA 448
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 271 bits (694), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 202/491 (41%), Positives = 254/491 (51%), Gaps = 81/491 (16%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ RLR YFS YG V+E+VI++DR T RARGFGF+ F+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN--------GSP---------GPYRSTKIFVGGLAST 103
E V+ KH IDG+ V+ KKA P++ SP G R+ KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 104 VTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+TE +FK YFDQFGTI D+VVM D NTQRPRGFGFIT+DS++AVD V ++FHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 164 EVKRAVPKELSPGPN-HSPL-SVYNY----DLSGVNSFINGFTQGYCPSNVGGYGLCVDG 217
EVKRAVPKE+SP N SPL S NY + NS+ N F G N
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN---------- 230
Query: 218 TVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVS-----RGLNPDYFD 272
++ P+ GR P+ GSG F LNH+ N N D + S R + YF+
Sbjct: 231 SLGPV--GRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 273 --SSKRFASSIGYDXXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGN 330
S R+ S IG++ N TA G GN
Sbjct: 289 GASPNRYTSPIGHNRTESPYNSNNRDLWGNRT-------------DTAGPGWNLNVSNGN 335
Query: 331 TISNTGVGVSLSLSNGNLGF-RGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPF 389
N G+ S ++SN N GF R +SGL S+P GF+G
Sbjct: 336 NRGNWGLPSSSAVSNDNNGFGRNYGTSSGLS------------------SSPFNGFEGSI 377
Query: 390 SEFYSSSSVNDDPIY------RSSNFEPDGFD-PFGYGLGVVASDVSAKCSPGYVGSYTV 442
E Y SV D + S+ E D +GY + V SD SA Y GSY V
Sbjct: 378 GELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNV 437
Query: 443 NKRQPNKGIAT 453
RQ N+GIA
Sbjct: 438 GNRQTNRGIAA 448
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 268 bits (685), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 252/488 (51%), Gaps = 81/488 (16%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ RLR YFS YG V+E+VI++DR T RARGFGF+ F+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN--------GSP---------GPYRSTKIFVGGLAST 103
E V+ KH IDG+ V+ KKA P++ SP G R+ KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 104 VTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+TE +FK YFDQFGTI D+VVM D NTQRPRGFGFIT+DS++AVD V ++FHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 164 EVKRAVPKELSPGPN-HSPL-SVYNY----DLSGVNSFINGFTQGYCPSNVGGYGLCVDG 217
EVKRAVPKE+SP N SPL S NY + NS+ N F G N
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN---------- 230
Query: 218 TVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVS-----RGLNPDYFD 272
++ P+ GR P+ GSG F LNH+ N N D + S R + YF+
Sbjct: 231 SLGPV--GRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 273 --SSKRFASSIGYDXXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGN 330
S R+ S IG++ N TA G GN
Sbjct: 289 GASPNRYTSPIGHNRTESPYNSNNRDLWGNRT-------------DTAGPGWNLNVSNGN 335
Query: 331 TISNTGVGVSLSLSNGNLGF-RGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPF 389
N G+ S ++SN N GF R +SGL S+P GF+G
Sbjct: 336 NRGNWGLPSSSAVSNDNNGFGRNYGTSSGLS------------------SSPFNGFEGSI 377
Query: 390 SEFYSSSSVNDDPIY------RSSNFEPDGFD-PFGYGLGVVASDVSAKCSPGYVGSYTV 442
E Y SV D + S+ E D +GY + V SD SA Y GSY V
Sbjct: 378 GELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNV 437
Query: 443 NKRQPNKG 450
RQ N+G
Sbjct: 438 GNRQTNRG 445
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 268 bits (685), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 252/488 (51%), Gaps = 81/488 (16%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ RLR YFS YG V+E+VI++DR T RARGFGF+ F+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN--------GSP---------GPYRSTKIFVGGLAST 103
E V+ KH IDG+ V+ KKA P++ SP G R+ KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 104 VTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+TE +FK YFDQFGTI D+VVM D NTQRPRGFGFIT+DS++AVD V ++FHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 164 EVKRAVPKELSPGPN-HSPL-SVYNY----DLSGVNSFINGFTQGYCPSNVGGYGLCVDG 217
EVKRAVPKE+SP N SPL S NY + NS+ N F G N
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYN---------- 230
Query: 218 TVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVS-----RGLNPDYFD 272
++ P+ GR P+ GSG F LNH+ N N D + S R + YF+
Sbjct: 231 SLGPV--GRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFN 288
Query: 273 --SSKRFASSIGYDXXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGN 330
S R+ S IG++ N TA G GN
Sbjct: 289 GASPNRYTSPIGHNRTESPYNSNNRDLWGNRT-------------DTAGPGWNLNVSNGN 335
Query: 331 TISNTGVGVSLSLSNGNLGF-RGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPF 389
N G+ S ++SN N GF R +SGL S+P GF+G
Sbjct: 336 NRGNWGLPSSSAVSNDNNGFGRNYGTSSGLS------------------SSPFNGFEGSI 377
Query: 390 SEFYSSSSVNDDPIY------RSSNFEPDGFD-PFGYGLGVVASDVSAKCSPGYVGSYTV 442
E Y SV D + S+ E D +GY + V SD SA Y GSY V
Sbjct: 378 GELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNV 437
Query: 443 NKRQPNKG 450
RQ N+G
Sbjct: 438 GNRQTNRG 445
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 134/192 (69%), Gaps = 17/192 (8%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ LR+YFS +G+V++ +++++ T R RGFGFVAFSDPAV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN-----GSPGPY------------RSTKIFVGGLAST 103
+ VL+ KH ID + VDVK+A + G G + R+ KIFVGGL
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 104 VTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+T +F+ YF+ +G + D V+M D TQRPRGFGF+++DSE++VD V ++FH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 164 EVKRAVPKELSP 175
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 17/192 (8%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++D K+F+GGISW+T++ +LR++F+ YG+V ++++++D+ T R RGFGFV FSDP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPK-----------------NGSPGPYRSTKIFVGGLAST 103
+ VL++KH ID + VDVK+A + +G ++ KIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 104 VTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+T+ +F++YF+ +G + D+ +M D T RPRGFGF+++DSE+AVDSV ++FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 164 EVKRAVPKELSP 175
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 137/221 (61%), Gaps = 17/221 (7%)
Query: 74 MVDVKKAAPKN-------------GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
MV+ KKA P++ GSPGP S KIFVGGLAS+VTE++FKKYF QFG I
Sbjct: 14 MVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 73
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPNHS 180
D+VVM D TQRPRGFGFI+YDSEEAVD V ++FHELNGKMVEVK AVPK+++ +
Sbjct: 74 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRN 133
Query: 181 PLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFPLFGSGYGMSP 240
++V ++ S ++S +N +TQG+ PS + GYG+ + SP R GF FG GYG+
Sbjct: 134 QMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIEL 193
Query: 241 NFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSI 281
NFEP N S R +P Y S RF S +
Sbjct: 194 NFEPNQTQ----NYGSGSSGGFGRPFSPGYAASLGRFGSQM 230
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+++ KIF+GG++ + ++YF+ +G + + V++ D T+R RGFGF+++ ++
Sbjct: 43 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 102
Query: 63 VLKKK-HKIDGKMVDVKKAAPKN 84
VL+K H+++GKMV+VK A PK+
Sbjct: 103 VLQKTFHELNGKMVEVKLAVPKD 125
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 124/199 (62%), Gaps = 27/199 (13%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M+ D K+F+GGI+ +T++ L+QYFS YG V+E+V+ K++ T + RGFGFV F++
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKNG-SPGPY--------------------------RST 93
+ L+ H I GK VDV+KA K+ P+ R+
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
KIFVGGL+S TE +FK YF++FG D+VVM D T RPRGFGF+TYDSE++V+ V
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 154 SFHELNGKMVEVKRAVPKE 172
+FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GG+S +T + + YF +G+ + V++ D T R RGFGFV + E V++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 67 K-HKIDGKMVDVKKAAPKNG 85
H++ K V+VK+A PK G
Sbjct: 181 NFHELSDKRVEVKRAIPKEG 200
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 5/170 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG+SW+T YF +G+V++SVI+ DR T RGFGFV F+D AVAE+VL++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRST----KIFVGGLASTVTESDFKKYFDQFGTIKDL 122
H ID + VD+K+ P+ ++ KIFVGGL + E + K YF +G I +
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186
Query: 123 VVMCDPNTQRPRGFGFITYDSEEAVDSVFLR-SFHELNGKMVEVKRAVPK 171
+M D +T R RGFGF+T+ +E++VD +F HEL K VE+KRA PK
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GG++ +T ++F YG++ +SVI+KDR T + RGFGFV ++D +V ++V++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 67 KHKIDGKMVDVKKAAPKNG-SPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
H I GK V++K+ P+ S +++ KIFVGG+ S+V + +FK++F QFG +K+ +M
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFH-ELNGKMVEVKRAVPKE 172
D +T R RGFGF+TY+SE+ VD + + EL+G VE+K+A PK+
Sbjct: 163 RDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
A KIFIGG+ DT ++F YG++ +SVI++DR T + RGFGF+ F+DP+V ++
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 63 VLKKKHKIDGKMVDVKKAAPKNG---SPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
V++ H I+GK V++K+ PK ++ KIFVGG+ STVTE + K +F ++G +
Sbjct: 76 VIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNV 135
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR-SFHELNGKMVEVKRAVPKE 172
+ V+ D T R RGFGF+ +DSEE VD + + + ++ VE+K+A PK+
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKK 189
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 97/148 (65%), Gaps = 3/148 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIFIGG+ DT ++F YG++ +SVI++DR T + RGFGF+ F+DP+V ++V++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 67 KHKIDGKMVDVKKAAPKNG---SPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLV 123
H I+GK V++K+ PK ++ KIFVGG+ STVTE + K +F ++G + +
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139
Query: 124 VMCDPNTQRPRGFGFITYDSEEAVDSVF 151
V+ D T R RGFGF+ +DSEE VD +
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 85 GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE 144
SPG KIF+GGL T + F K+F ++G I D V+M D +T +PRGFGFIT+
Sbjct: 16 ASPG-----KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 145 EAVDSVFLRSFHELNGKMVEVKRAVPK 171
VD V + H +NGK VE+KR +PK
Sbjct: 71 SVVDKV-IEDTHVINGKQVEIKRTIPK 96
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GGI + L+ +F+ YG V+E +I+D T R+RGFGFV F V +E+L K
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 67 KHKIDGKMVDVKKAAPKNG 85
+ ID M D + + K G
Sbjct: 170 GNMID--MADTQVSLYKWG 186
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 111/178 (62%), Gaps = 2/178 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+ + GI WD + L+ Y S +G + + +++KDR+T R+RGFG+V F+ A+ LK
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRS-TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
+H + ++++VK A PK P + T+IFV + S+V+ESDF+ +F+++G I DL +
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPNHSPLS 183
D N+++ RG GFIT+ S ++V+ + + H+L G V V RA PKE P P++
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDL-MEDTHDLGGTTVAVDRATPKEDDHPPRPPPVA 180
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
KIFVG L + D + YF +FG I+D + DP RGFGF+T+ D V R
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 154 SFHELNGKMVEVKRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGL 213
S HE+ G+ V + A P + + GP+ +G +S ++ P GGYG
Sbjct: 301 S-HEICGQEVAIDSATPLDEA-GPS-----------AGASSMLSSSR----PEYFGGYG- 342
Query: 214 CVDGTVSPIARGRIGFPLFGSGYGMSPNFEP 244
G + R G L GYGM PN P
Sbjct: 343 ---GPMRAFGRMYGGMSLDDWGYGM-PNARP 369
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+G + + + LR YF +G + ++ I KD RGFGFV F++ VA+ V ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHKIDGKMVDVKKAAP 82
H+I G+ V + A P
Sbjct: 301 SHEICGQEVAIDSATP 316
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 111/178 (62%), Gaps = 2/178 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+ + GI WD + L+ Y S +G + + +++KDR+T R+RGFG+V F+ A+ LK
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRS-TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
+H + ++++VK A PK P + T+IFV + S+V+ESDF+ +F+++G I DL +
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPNHSPLS 183
D N+++ RG GFIT+ S ++V+ + + H+L G V V RA PKE P P++
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDL-MEDTHDLGGTTVAVDRATPKEDDHPPRPPPVA 180
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
KIFVG L + D + YF +FG I+D + DP RGFGF+T+ D V R
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 154 SFHELNGKMVEVKRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGL 213
S HE+ G+ V + A P + + GP+ +G +S ++ P GGYG
Sbjct: 301 S-HEICGQEVAIDSATPLDEA-GPS-----------AGASSMLSSSR----PEYFGGYG- 342
Query: 214 CVDGTVSPIARGRIGFPLFGSGYGMSPNFEP 244
G + R G L GYGM PN P
Sbjct: 343 ---GPMRAFGRMYGGMSLDDWGYGM-PNARP 369
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+G + + + LR YF +G + ++ I KD RGFGFV F++ VA+ V ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHKIDGKMVDVKKAAP 82
H+I G+ V + A P
Sbjct: 301 SHEICGQEVAIDSATP 316
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
++ K+F+G +++D N + L F G V + +I +R T ++RGFGFV S AE
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 63 VLKK--KHKIDGKMVDVKKAAPK----NGSPGPYRST-KIFVGGLASTVTESDFKKYFDQ 115
++K ++ ++G+++ V KAAP+ +P Y +++VG L V ++ F +
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMVEVKRA 168
G + + V+ D T R RGFGF+T D +E +++ L G+ + V A
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 87 PGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EE 145
P P K+FVG LA V F+Q GT++ V+ + T + RGFGF+T S +E
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 146 AVDSVFLRSFHELNGKMVEVKRAVPK 171
A +V + ++LNG+++ V +A P+
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPR 229
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+F+G + +D + + L F G V S +I +R T ++RGFGFV S AE+
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 64 LKK--KHKIDGKMVDVKKAAPKNGSPGPY-----RSTKIFVGGLASTVTESDFKKYFDQF 116
++K +++G+ + V +AAP+ P + +I+VG L V ++ F +
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEH 230
Query: 117 GTIKDLVVMCDPNTQRPRGFGFITYDSEEAVD-SVFLRSFHELNGKMVEVKRA 168
G + D V+ D T R RGFGF+ +E V+ ++ L G+ ++V A
Sbjct: 231 GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 85 GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS- 143
G P P K+FVG L V F+Q GT++ V+ + +T + RGFGF+T +
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 144 EEAVDSVFLRSFHELNGKMVEVKRAVPK 171
EEA +V + E+NG+ + V RA P+
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 17/200 (8%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L F YG++ + + D+ + +++G+GF+ F + A LK+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 -KHKIDGKMVDVKKAA--PKNGSP--GPYR-------STKIFVGGLASTVTESDFKKYFD 114
+ KI +M + A+ P G+P P + KI+V +++ + ++F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELS 174
+FG I++ + D T RP+GF Y S E+ G ++ +A +
Sbjct: 249 RFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA-----N 303
Query: 175 PGPNHSPLSVYNYDLSGVNS 194
GP +N++ NS
Sbjct: 304 DGPKQVKQHQHNHNSHNQNS 323
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 17/200 (8%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L F YG++ + + D+ + +++G+GF+ F + A LK+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 -KHKIDGKMVDVKKAA--PKNGSP--GPYR-------STKIFVGGLASTVTESDFKKYFD 114
+ KI +M + A+ P G+P P + KI+V +++ + ++F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELS 174
+FG I++ + D T RP+GF Y S E+ G ++ +A +
Sbjct: 249 RFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA-----N 303
Query: 175 PGPNHSPLSVYNYDLSGVNS 194
GP +N++ NS
Sbjct: 304 DGPKQVKQHQHNHNSHNQNS 323
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
++FIGG+ D + LR G++ E ++KDR + ++G+ FVAF VA++ ++
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 66 KKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDL 122
+ H + GK + + KN ++F+G + TE +F+K + G ++++
Sbjct: 176 ELHSKEFKGKTIRCSLSETKN---------RLFIGNIPKNWTEDEFRKVIEDVGPGVENI 226
Query: 123 VVMCDP-NTQRPRGFGFITYDSEEAVD---SVFLRSFHELNGKMVEVKRAVPKELSPGPN 178
++ DP NT R RGF F+ Y + D + S +L G V A PK P
Sbjct: 227 ELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKS---SPE 283
Query: 179 HS 180
HS
Sbjct: 284 HS 285
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
++FIGG+ D + LR G++ E ++KDR + ++G+ FVAF VA++ ++
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 66 KKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDL 122
+ H + GK + + KN ++F+G + TE +F+K + G ++++
Sbjct: 176 ELHSKEFKGKTIRCSLSETKN---------RLFIGNIPKNWTEDEFRKVIEDVGPGVENI 226
Query: 123 VVMCDP-NTQRPRGFGFITYDSEEAVD---SVFLRSFHELNGKMVEVKRAVPKELSPGPN 178
++ DP NT R RGF F+ Y + D + S +L G V A PK P
Sbjct: 227 ELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKS---SPE 283
Query: 179 HS 180
HS
Sbjct: 284 HS 285
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FI G++ DT LR FS+YG + E+++I D+ T +++G+GFV F A LK+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 67 -KHKIDGKMVDVKKAAPKNGSPGPYRS----TKIFVGGLASTVTESDFKKYFDQFGTIKD 121
KIDG++ + AA N G + KI+V + + +F +G +++
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
Query: 122 LVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ D T + RGF Y + E + ++GK + K AV
Sbjct: 196 GPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FI G++ DT LR FS+YG + E+++I D+ T +++G+GFV F A LK+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 67 -KHKIDGKMVDVKKAAPKNGSPGPYRS----TKIFVGGLASTVTESDFKKYFDQFGTIKD 121
KIDG++ + AA N G + KI+V + + +F +G +++
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
Query: 122 LVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ D T + RGF Y + E + ++GK + K AV
Sbjct: 196 GPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE-VLK 65
K+F+GG++W+T++ LR YF +G ++E+V+I D+++ R++G+GFV F DP A++ +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 66 KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT 118
IDG+ + AA P VGG VT S FK +F T
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVT-SPFKTHFGTAAT 119
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + + YF+QFG I + VV+ D ++ R +G+GF+T+ EA +
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 153 RSFHELNGKMVEVKRAV 169
++G+ A
Sbjct: 67 DPAPVIDGRRANCNLAA 83
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE-VLK 65
K+F+GG++W+T++ LR YF +G ++E+V+I D+++ R++G+GFV F DP A++ +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 66 KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT 118
IDG+ + AA P VGG VT S FK +F T
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVT-SPFKTHFGTAAT 119
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + + YF+QFG I + VV+ D ++ R +G+GF+T+ EA +
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 153 RSFHELNGKMVEVKRAV 169
++G+ A
Sbjct: 67 DPAPVIDGRRANCNLAA 83
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T LRQ+F YG+++E+V+I D+ T R++G+GFV F DP A
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Query: 66 KKHK-IDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 84 DPTPIIDGRRANCNLAS 100
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
TK+FVGGLA +++F+Q+G I + VV+ D NT R +G+GF+T+ EA
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
++FIGG+ D + LR G++ E ++KDR + ++G+ FVAF VA++ ++
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 66 KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLVV 124
+ H + K ++ N S S ++F+G + TE +F+K + G ++++ +
Sbjct: 176 ELHS-----KEFKASSTANCSLS--LSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 125 MCDP-NTQRPRGFGFITYDSEEAVD---SVFLRSFHELNGKMVEVKRAVPKELSPGPNHS 180
+ DP NT R RGF F+ Y + D + S +L G V A PK P HS
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKS---SPEHS 285
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+ K+F+G + + +R YF +G V+E +IKD+ T + +G FV ++ A+
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 63 VLKKKH---KIDGKM--VDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
++ H + G V V+ A + G K+FVG L TE + ++ F QFG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIG-TLEFKLFVGSLNKQATEKEVEEIFLQFG 235
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF--LRSFHELNG--KMVEVKRAVPKEL 173
++D+ +M D Q RG GF+ Y S+E + L + + G + + V+ A PK
Sbjct: 236 HVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRP 294
Query: 174 SPG 176
PG
Sbjct: 295 KPG 297
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L + F YG++ + + D+ + +++G+GF+ + + A LK+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHKIDGKMVDVKKAAPK------------------NGSPGPYRSTKIFVGGLASTVTESD 108
K G + + A K S + KI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
+F +FG I++ + D T RP+GF Y S E+ G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 169 V--PKELSPGPNHSPLSVYN 186
+ PK +H YN
Sbjct: 321 IDGPKPGKQQQHHHNPHAYN 340
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L + F YG++ + + D+ + +++G+GF+ + + A LK+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHKIDGKMVDVKKAAPK------------------NGSPGPYRSTKIFVGGLASTVTESD 108
K G + + A K S + KI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
+F +FG I++ + D T RP+GF Y S E+ G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 169 V--PKELSPGPNHSPLSVYN 186
+ PK +H YN
Sbjct: 321 IDGPKPGKQQQHHHNPHAYN 340
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L + F YG++ + + D+ + +++G+GF+ + + A LK+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHKIDGKMVDVKKAAPK------------------NGSPGPYRSTKIFVGGLASTVTESD 108
K G + + A K S + KI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
+F +FG I++ + D T RP+GF Y S E+ G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 169 V--PKELSPGPNHSPLSVYN 186
+ PK +H YN
Sbjct: 321 IDGPKPGKQQQHHHNPHAYN 340
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L + F YG++ + + D+ + +++G+GF+ + + A LK+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHKIDGKMVDVKKAAPK------------------NGSPGPYRSTKIFVGGLASTVTESD 108
K G + + A K S + KI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
+F +FG I++ + D T RP+GF Y S E+ G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 169 V--PKELSPGPNHSPLSVYN 186
+ PK +H YN
Sbjct: 321 IDGPKPGKQQQHHHNPHAYN 340
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WDT L + F YG++ + + D+ + +++G+GF+ + + A LK+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHKIDGKMVDVKKAAPK------------------NGSPGPYRSTKIFVGGLASTVTESD 108
K G + + A K S + KI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
+F +FG I++ + D T RP+GF Y S E+ G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 169 V--PKELSPGPNHSPLSVYN 186
+ PK +H YN
Sbjct: 321 IDGPKPGKQQQHHHNPHAYN 340
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+ K+F+G + + +R YF +G V+E +IKD+ T + +G FV ++ A+
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 101
Query: 63 VLKKKH---KIDGKM--VDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
++ H + G V V+ A + G K+FVG L TE + ++ F QFG
Sbjct: 102 AIRALHNQITLPGGTGPVQVRYADGERERIGTLE-FKLFVGSLNKQATEKEVEEIFLQFG 160
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF--LRSFHELNG--KMVEVKRAVPKEL 173
++D+ +M D Q RG GF+ Y S+E + L + + G + + V+ A PK
Sbjct: 161 HVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRP 219
Query: 174 SPG 176
PG
Sbjct: 220 KPG 222
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+ K+F+G + + +R YF +G V+E +IKD+ T + +G FV ++ A+
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 63 VLKKKH---KIDGKM--VDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
++ H + G V V+ A + G K+FVG L TE + ++ F QFG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIG-TLEFKLFVGSLNKQATEKEVEEIFLQFG 235
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF--LRSFHELNG--KMVEVKRAVPKEL 173
++D+ +M D Q RG GF+ Y S+E + L + + G + + V+ A PK
Sbjct: 236 HVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRP 294
Query: 174 SPG 176
PG
Sbjct: 295 KPG 297
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+IF+GG+SWD +R+L F YGK+ E I+ R T R RGFGF+ F+D A++ +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--KIDGKMVDVKKAAPKNG 85
H ++ K++ V KA PK G
Sbjct: 73 MHGRELGNKVISVNKAEPKVG 93
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
++IFVGGL+ VTE + FD++G I + +M +T RPRGFGFIT+ D A D++
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 151 FLRSFHELNGKMVEVKRAVPK 171
EL K++ V +A PK
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+IF+GG+SWD +R+L F YGK+ E I+ R T R RGFGF+ F+D A++ +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--KIDGKMVDVKKAAPKNG 85
H ++ K++ V KA PK G
Sbjct: 73 MHGRELGNKVISVNKAEPKVG 93
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
++IFVGGL+ VTE + FD++G I + +M +T RPRGFGFIT+ D A D++
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 151 FLRSFHELNGKMVEVKRAVPK 171
EL K++ V +A PK
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG+SW T+ L+Q F+++G+V E+ +I DR T R+RGFGFV+FS A +K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 67 K--HKIDGKMVDVKKAAPKNGSP 87
+++G+ + V A ++ +P
Sbjct: 96 MDGKELNGRQIRVNLATERSSAP 118
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 90 YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDS 149
Y S+K+FVGGL+ +S K+ F FG + + V+ D T R RGFGF+++ E++ ++
Sbjct: 32 YMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANN 91
Query: 150 VFLR-SFHELNGKMVEVKRAVPKELSP 175
ELNG+ + V A + +P
Sbjct: 92 AIKEMDGKELNGRQIRVNLATERSSAP 118
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG+SW T+ L+Q F+++G+V E+ +I DR T R+RGFGFV+FS A +K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 67 K--HKIDGKMVDVKKAAPKNGSP 87
+++G+ + V A ++ +P
Sbjct: 96 MDGKELNGRQIRVNLATERSSAP 118
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 90 YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDS 149
Y S+K+FVGGL+ +S K+ F FG + + V+ D T R RGFGF+++ E++ ++
Sbjct: 32 YMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANN 91
Query: 150 VFLR-SFHELNGKMVEVKRAVPKELSP 175
ELNG+ + V A + +P
Sbjct: 92 AIKEMDGKELNGRQIRVNLATERSSAP 118
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV-L 64
K+F+GG++W+T LR++F YG ++E+V+I D+ T R++G+GFV F DP A +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 65 KKKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 84 DPTPIIDGRRANCNLAS 100
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEA-----V 147
TK+FVGGLA +++FDQ+G I + VV+ D NT R +G+GF+T+ EA V
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 148 DSVFLRSFHELNGKMVEVKRAVP 170
D + N + + R+ P
Sbjct: 84 DPTPIIDGRRANCNLASLGRSRP 106
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV-L 64
K+F+GG++W+T LR++F YG ++E+V+I D+ T R++G+GFV F DP A +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 65 KKKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 84 DPTPIIDGRRANCNLAS 100
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEA-----V 147
TK+FVGGLA +++FDQ+G I + VV+ D NT R +G+GF+T+ EA V
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 148 DSVFLRSFHELNGKMVEVKRAVP 170
D + N + + R+ P
Sbjct: 84 DPTPIIDGRRANCNLASLGRSRP 106
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ + D ++ LR+ F+ +GK++ I KD R RG+ FV F +P A +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN-RLCRGYAFVNFDNPEDARRAAETV 261
Query: 68 H--KIDGKMVDVKKAAPKNGSPGPYRS---------------TKIFVGGLASTVTESDFK 110
+ K K + V +A K R + I+V + VTE + +
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 111 KYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFH--ELNGKMVEVKR 167
K+F Q GTI +MCD + +GFGF+ + + EEA+D+V ++FH +GK + V
Sbjct: 322 KHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAV--KTFHGQMFHGKPLYVAI 378
Query: 168 AVPKE 172
A KE
Sbjct: 379 AQKKE 383
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++FIGG+ D + LR G++ E ++KDR + ++G+ FVAF VA++ +++
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 67 KH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
H + GK + + KN ++F+G + TE +F+K + G
Sbjct: 157 LHSKEFKGKTIRCSLSETKN---------RLFIGNIPKNWTEDEFRKVIEDVGP------ 201
Query: 125 MCDP-NTQRPRGFGFITYDSEEAVD---SVFLRSFHELNGKMVEVKRAVPKELSPGPNHS 180
DP NT R RGF F+ Y + D + S +L G V A PK P HS
Sbjct: 202 -GDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKS---SPEHS 257
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
+ K+F+G + ++ + +L Q F + G V +I D+ T R+RGFGFV S EV
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS---VSEVE 146
Query: 65 KKKHKIDGKMVDVKKAAPKNGSPGPYRS-----------------------------TKI 95
+ +G +D + G P P R ++
Sbjct: 147 AAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRV 206
Query: 96 FVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSF 155
+VG L+ V + + F + G + + V+ D ++ R +GFGF+TYDS + V + ++S
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA-IKSL 265
Query: 156 H--ELNGKMVEVKRA 168
+L+G+ + V A
Sbjct: 266 DGADLDGRQIRVSEA 280
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSD----- 56
E D +F I+ +R + ++FS GKV + II DR +RR+RG G+V F D
Sbjct: 178 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 237
Query: 57 --------PAVAEEVLKKKHKIDGKMVD-VKKAAPKNGSPGPYR--STKIFVGGLASTVT 105
P + + V+ K + + +V AA G GPY + +++VG L ++
Sbjct: 238 MAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMS 297
Query: 106 ESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVE 164
E D +K F+ FG++ +LV + T +GFGF+ + E+A +++ L E+ G+ ++
Sbjct: 298 EDDLRKVFESFGSV-ELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIK 356
Query: 165 V 165
V
Sbjct: 357 V 357
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSD----- 56
E D +F I+ +R + ++FS GKV + II DR +RR+RG G+V F D
Sbjct: 227 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 286
Query: 57 --------PAVAEEVLKKKHKIDGKMVD-VKKAAPKNGSPGPYR--STKIFVGGLASTVT 105
P + + V+ K + + +V AA G GPY + +++VG L ++
Sbjct: 287 MAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMS 346
Query: 106 ESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVE 164
E D +K F+ FG++ +LV + T +GFGF+ + E+A +++ L E+ G+ ++
Sbjct: 347 EDDLRKVFESFGSV-ELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIK 405
Query: 165 V 165
V
Sbjct: 406 V 406
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ +++GG+ ++ L + F G V+ + KDR T + +GF+ + A+
Sbjct: 23 QDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYA 82
Query: 64 LKKKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI-K 120
+K + K+ GK + V KA+ S +F+G L V E F FG I
Sbjct: 83 IKVLNMIKLHGKPIRVNKASQDKKSLD--VGANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
+ +M DP+T RGFGFI+YDS EA D+
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++++G + + L Q F G V++ I+ D+ T R+RGFGFV A+E ++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 66 -KKHKIDGKMVDVK-KAAPKNGSPGPYRST-------------KIFVGGLASTVTESDFK 110
+I G+ V V P+ G R+ K++ G L +T K
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 111 KYF-DQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH--ELNGKMVEVKR 167
F DQ G + V+ + NT R RGFGFI+++S E V S L + + E+ G+ + +
Sbjct: 237 DAFGDQPGVLGAKVIY-ERNTGRSRGFGFISFESAENVQSA-LATMNGVEVEGRALRLNL 294
Query: 168 AVPKELSPGPNHSPLSV 184
A +E P SP SV
Sbjct: 295 ASERE---KPTVSPPSV 308
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GG++W+T + +R+YF +G+++E+V+I D+ T R++G+GFV F + A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 67 KHK-IDGKMVDVKKAAPKNGSPGP 89
+ IDG+ + A P P
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRP 106
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TKIFVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA----M 77
Query: 153 RSFHELN----GKMVEVKRAVPKELSPGPNHSP 181
R+ +N G+ A P P SP
Sbjct: 78 RACQNMNPVIDGRRANCNLACLGAQKPRPPTSP 110
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
+ + K+F+GG++W+T +R+YF +G+++E+VII D+ T +++G+GFV F D A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 62 EVLKKKHK-IDGKMVDVKKAA 81
+ + IDG+ + A+
Sbjct: 73 RAVADPNPVIDGRKANCNIAS 93
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
TK+FVGGLA + ++YFDQFG I + V++ D T + +G+GF+T+ DS+ A +V
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ F+GG++W TN L++ FS +G V++S II DR + R+RGFGFV F D + +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--KIDGKMVDVKKAAPKNGSPGPY 90
+ ++DG+++ V +A + G +
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGW 92
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 153 RSFHELNGKMVEVKRAVPK 171
+ EL+G+++ V A +
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++WDT++ + +F YG ++E+VII D+ TRR++G+GFV F D A +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 84 NGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS 143
NG G + TK+FVGGLA + +F ++G I + V++ D T+R +G+GF+T+
Sbjct: 8 NGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKD 67
Query: 144 EEAVDSVFLRSFHELNGKMVEVKRA 168
+A S +NG+ A
Sbjct: 68 AKAATRACEDSTPIINGRRANCNLA 92
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
++IFVGGL+ VT+ D ++ F +FG I D +M + +T R RGFGFIT+ A+D +
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES-I 65
Query: 153 RSFH--ELNGKMVEVKRAVPK 171
R H + +++ V RA PK
Sbjct: 66 REMHGRDFGDRVISVNRAEPK 86
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+IF+GG+S + R L + FS +G +++ I+ +R T R+RGFGF+ F+D +E +++
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 67 KHKID--GKMVDVKKAAPKNG 85
H D +++ V +A PK G
Sbjct: 68 MHGRDFGDRVISVNRAEPKLG 88
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 22/176 (12%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+F+G + + +L F + V E IIK++TTR RG F+ A++V
Sbjct: 10 ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKV 69
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYR---------STKIFVGGLASTVTESDFKKYFD 114
+ H KK P SP + K+FVG L V+E++ + F
Sbjct: 70 INSFHN--------KKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFS 121
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
++GTIKDL ++ + Q +G F+ Y+S+E + + LNG+ + VP
Sbjct: 122 EYGTIKDLQILRG-SLQTSKGCLFLKYESKEQA----VAAMEALNGRHIMEGANVP 172
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ FIGG++W T+ R LR F YG ++E+ ++ D+ + R+RGFGF+ F + +E +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 67 KH--KIDGKMVDVKKAAPKNGSPG 88
+ +DG+ + V KA P G G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAG 91
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVD-SVFL 152
+ F+GGLA T ++ + F+++G + + V+ D + R RGFGFIT+D ++A+D ++
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 153 RSFHELNGKMVEVKRAVPKELSPGPN 178
+ +L+G+ + V +A P + G +
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRD 93
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ F+GG++W TN L++ FS +G V++S II DR + R+RGFGFV F D + +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--KIDGKMVDVKKA 80
+ ++DG+++ V +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 153 RSFHELNGKMVEVKRA 168
+ EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 27/178 (15%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS---DPAVAEEVL 64
+++ ++ T L+ F YGK+ +V++KD + ++GFGFV F D A A E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 275
Query: 65 KKKHKIDGKMVDVKKAAPKNG---------------SPGPYRSTKIFVGGLASTVTESDF 109
HK D K V +A K+ + ++S+ ++V L ++++
Sbjct: 276 NG-HKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 110 KKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVEVK 166
K+ F FGT+ VM DPN +G GF+ + + EEA +++ +L+GKM+E K
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAM-----SQLSGKMIESK 386
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
N +++G + ++ +L F G V+ + +D TRR+ G+G+V F++P A +
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 65 KKKHKID--GKMVDVKKAAPKNGSPGPYRSTK--IFVGGLASTVTESDFKKYFDQFGTIK 120
++ + I GK + V + + P RS IF+ L ++ F FG I
Sbjct: 95 QELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV 151
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
V D + Q +G+GF+ Y +EE+ ++ +LNG ++ K+
Sbjct: 152 SCKVAVDSSGQS-KGYGFVQYANEESAQ----KAIEKLNGMLLNDKQ 193
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T +R+YF +G+++E+VII D+ T +++G+GFV F + A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 66 KKHK-IDGKMVDVKKAA 81
+ IDG+ + A+
Sbjct: 77 DPNPVIDGRKANCNIAS 93
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
TK+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ +S+ A +V
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ F+GG++W TN L++ FS +G V++S II DR + R+RGFGFV F D + +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--KIDGKMVDVKKA 80
+ ++DG+++ V +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 153 RSFHELNGKMVEVKRA 168
+ EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+SW T+ LR F+ +G V+++ +I DR T R+RGFGFV F+D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS- 94
Query: 67 KHKIDGKMVDVK--KAAPKNGSPGPYRS 92
++DGK ++ + + P N P R+
Sbjct: 95 --EMDGKELNGRHIRVNPANDRPSAPRA 120
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSV 150
STK+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A ++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 151 FLRSFHELNGKMVEVKRAVPKELSP 175
ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+SW T+ LR F+ +G V+++ +I DR T R+RGFGFV F+D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS- 94
Query: 67 KHKIDGKMVDVK--KAAPKNGSPGPYRS 92
++DGK ++ + + P N P R+
Sbjct: 95 --EMDGKELNGRHIRVNPANDRPSAPRA 120
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSV 150
STK+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A ++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 151 FLRSFHELNGKMVEVKRAVPKELSP 175
ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+SW T+ LR F+ +G V+++ +I DR T R+RGFGFV F+D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS- 94
Query: 67 KHKIDGKMVDVK--KAAPKNGSPGPYRS 92
++DGK ++ + + P N P R+
Sbjct: 95 --EMDGKELNGRHIRVNPANDRPSAPRA 120
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSV 150
STK+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A ++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 151 FLRSFHELNGKMVEVKRAVPKELSP 175
ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK- 66
IFI + + + L + FS++G ++ + D T R++G+GFV F A+ + K
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 67 -------KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
K G + ++ A +P P R T ++V L + E + +K F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTP-RFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
VVM D + R FGF+ ++ EA S + ++NG
Sbjct: 256 SSAVVMRD-QSGNSRCFGFVNFECTEAAAS----AVEKMNG 291
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ + + + LR+ F +G + +V+++D++ +R FGFV F A ++K
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 68 HKID--GKMVDVKKAAPKNGSPGPYRS---------------TKIFVGGLASTVTESDFK 110
+ I ++ V +A K+ R +++ L +V + K
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 111 KYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+ F ++G + VM +P RGFGF+ Y + E LR+ E+NGKM+
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEA----LRALSEMNGKMI 397
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+G I ++ +L F + V E IIKD+ TR +RG F+ A++++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYR---------STKIFVGGLASTVTESDFKKYFDQFG 117
H KK P S + K+FVG L V+E++ + F ++G
Sbjct: 79 CHN--------KKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF--LRSFHELNGKMVEV 165
TIKDL ++ Q +G F+ Y+++E S + H++ G V +
Sbjct: 131 TIKDLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPL 179
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+ F+GG++W T+ R L F+ YG V++S II DR T R+RGFGFV F D ++ ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 66 -KKHKIDGKMVDVKKA 80
+DG+ + V +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA + + F Q+G + D ++ D T R RGFGF+T+ E+A+ D++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 153 RSFHELNGKMVEVKRA 168
+ +L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+ F+GG++W T+ R L F+ YG V++S II DR T R+RGFGFV F D ++ ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 66 -KKHKIDGKMVDVKKA 80
+DG+ + V +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA + + F Q+G + D ++ D T R RGFGF+T+ E+A+ D++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 153 RSFHELNGKMVEVKRA 168
+ +L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+F+G + + +L F + V E IIK++TTR RG F+ A++V
Sbjct: 10 ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKV 69
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYR------------------STKIFVGGLASTVT 105
+ H KK P SP + K+FVG L V+
Sbjct: 70 INSFHN--------KKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVS 121
Query: 106 ESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEV 165
E++ + F ++GTIKDL ++ + Q +G F+ Y+S+E + + LNG+ +
Sbjct: 122 ETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQA----VAAMEALNGRHIME 176
Query: 166 KRAVP 170
VP
Sbjct: 177 GANVP 181
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE-VLK 65
K+F+GG++W+T++ ++++F +G+++E+V+I D+ + R++G+GFV F + A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 66 KKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 74 ATPVIDGRRANCNLAS 89
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + KK+F+QFG I + VV+ D + R +G+GF+T+ EA S +
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 153 RSFHELNGKMVEVKRA 168
+ ++G+ A
Sbjct: 73 DATPVIDGRRANCNLA 88
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE-VLK 65
K+F+GG++W+T++ ++++F +G+++E+V+I D+ + R++G+GFV F + A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 66 KKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 74 ATPVIDGRRANCNLAS 89
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + KK+F+QFG I + VV+ D + R +G+GF+T+ EA S +
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 153 RSFHELNGKMVEVKRA---VPKELSPGPNH 179
+ ++G+ A + + PNH
Sbjct: 73 DATPVIDGRRANCNLASLGLQRSKPSTPNH 102
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T +R+YF +G+++E+VII D+ T +++G+GFV F + A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 66 KKHK-IDGKMVDVKKAA 81
+ IDG+ + A+
Sbjct: 77 DPNPVIDGRKANCNIAS 93
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
TK+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ +S+ A +V
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Query: 4 DNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
D+ K +++G + ++ L FS G+V +I+++ T ++ G+GFV F A AEE
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 63 VLK-----------KKHKIDGKMVDV-KKAAPKNGSPGPYRSTKIFVGGLASTVTESDFK 110
VL+ + +I+ +K A +NG +FVG L+ VT+
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGP-----DLSVFVGDLSPDVTDVLLH 219
Query: 111 KYF-DQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG-----KMVE 164
+ F D++ ++K V+ D NT R +G+GF+ + E R+ E+NG + +
Sbjct: 220 ETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERS----RALTEMNGAYCSNRQMR 275
Query: 165 VKRAVPKE-LSPGPNHSPLSV 184
V A PK ++ HS +V
Sbjct: 276 VGIATPKRAIANQQQHSSQAV 296
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+SW T+ LR F+ +G V+++ +I DR T R+RGFGFV F+D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS- 94
Query: 67 KHKIDGKMVDVK--KAAPKNGSP 87
++DGK ++ + + P N P
Sbjct: 95 --EMDGKELNGRHIRVNPANDRP 115
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSV 150
STK+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A ++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 151 FLRSFHELNGKMVEVKRA 168
ELNG+ + V A
Sbjct: 94 SEMDGKELNGRHIRVNPA 111
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSD-PAVA 60
E D +F + +R + ++FS GKV + +I DR +RR++G G++ F D +V
Sbjct: 164 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 223
Query: 61 EEVLKKKHKIDGKMVDVKKA-APKN---------GSPGPYRSTKIFVGGLASTVTESDFK 110
+ G+ V VK + A KN G GP K++VG L ++E +
Sbjct: 224 MAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPA-DRKLYVGNLHFNMSELQLR 282
Query: 111 KYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
+ F+ FG ++ + + DP T + +GFGFI + E + + LNGK+
Sbjct: 283 QIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI----ALNGKL 330
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+G I ++ +L F + V E IIKD+ TR +RG F+ A++++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYR---------STKIFVGGLASTVTESDFKKYFDQFG 117
H KK P S + K+FVG L V+E++ + F ++G
Sbjct: 79 CHN--------KKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF--LRSFHELNGKMVEV 165
TIKDL ++ Q +G F+ Y+++E S + H++ G V +
Sbjct: 131 TIKDLQIL-RGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPL 179
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE-VLK 65
K+F+GG++W+T++ ++++F +G+++E+V+I D+ + R++G+GFV F + A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 66 KKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 74 ATPVIDGRRANCNLAS 89
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + KK+F+QFG I + VV+ D + R +G+GF+T+ EA S +
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 153 RSFHELNGKMVEVKRA---VPKELSPGPNH 179
+ ++G+ A + + PNH
Sbjct: 73 DATPVIDGRRANCNLASLGLQRSKPSTPNH 102
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+++IG I +L + +G V + ++ D+ + R+R FGF A V++K
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 67 KH--KIDGKMVDVK-KAAPKNGSP--------------GPYRSTKIFVGGLASTVTESDF 109
+ ++G+ + V P SP PY K++VG LA TVT+
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY---KVYVGNLAKTVTKEML 193
Query: 110 KKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVE 164
+ F + G + V P T + GFGF+T+ SEE V++ + LN ++E
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV----ALNNSLLE 244
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+++IG I +L + +G V + ++ D+ + R+R FGF A V++K
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 67 KH--KIDGKMVDVK-KAAPKNGSP--------------GPYRSTKIFVGGLASTVTESDF 109
+ ++G+ + V P SP PY K++VG LA TVT+
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY---KVYVGNLAKTVTKEML 193
Query: 110 KKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVE 164
+ F + G + V P T + GFGF+T+ SEE V++ + LN ++E
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV----ALNNSLLE 244
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 53/255 (20%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ + + L++ F YG + +V++KD++ +R FGFV F P A ++K
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 68 HKID--GKMVDVKKAAPKNGSPGPYRS---------------TKIFVGGLASTVTESDFK 110
+ I ++ V +A K+ R + +++ L +V + K
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 111 KYFDQFGTIKDLVVMCDPNTQ-RPRGFGFITYDSEEAVDSVFLRSFHELNGKMV------ 163
+ F ++G + VM N+Q RGFGF+ Y + E L + E+NGKM+
Sbjct: 360 EMFSEYGNVTSCKVMM--NSQGLSRGFGFVAYSNPEEA----LLAMKEMNGKMIGRKPLY 413
Query: 164 -------EVKRAVPKEL-----SPG---PNHSPLSVYNYD-----LSGVNS--FINGFTQ 201
E ++A + L SPG P SP+S +++ +SG + FI Q
Sbjct: 414 VALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQ 473
Query: 202 GYCPSNVGGYGLCVD 216
G PS GYG V
Sbjct: 474 GLVPSQPMGYGYQVQ 488
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+FI + + + L + FS++G ++ + D R++G+GFV F A+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID-- 204
Query: 68 HKIDGKMVDVK------------KAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQ 115
K++G +++ K +A ++G+ + T ++V L +T+ + KK F +
Sbjct: 205 -KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSF--TNVYVKNLPKEITDDELKKTFGK 261
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
+G I VVM D + R FGF+ + S EA
Sbjct: 262 YGDISSAVVMKD-QSGNSRSFGFVNFVSPEAA 292
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 53/255 (20%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ + + L++ F YG + +V++KD++ +R FGFV F P A ++K
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 68 HKID--GKMVDVKKAAPKNGSPGPYRS---------------TKIFVGGLASTVTESDFK 110
+ I ++ V +A K+ R + +++ L +V + K
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 111 KYFDQFGTIKDLVVMCDPNTQ-RPRGFGFITYDSEEAVDSVFLRSFHELNGKMV------ 163
+ F ++G + VM N+Q RGFGF+ Y + E L + E+NGKM+
Sbjct: 360 EMFSEYGNVTSCKVMM--NSQGLSRGFGFVAYSNPEEA----LLAMKEMNGKMIGRKPLY 413
Query: 164 -------EVKRAVPKEL-----SPG---PNHSPLSVYNYD-----LSGVNS--FINGFTQ 201
E ++A + L SPG P SP+S +++ +SG + FI Q
Sbjct: 414 VALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQ 473
Query: 202 GYCPSNVGGYGLCVD 216
G PS GYG V
Sbjct: 474 GLVPSQPMGYGYQVQ 488
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+FI + + + L + FS++G ++ + D R++G+GFV F A+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID-- 204
Query: 68 HKIDGKMVDVK------------KAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQ 115
K++G +++ K +A ++G+ + T ++V L +T+ + KK F +
Sbjct: 205 -KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSF--TNVYVKNLPKEITDDELKKTFGK 261
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
+G I VVM D + R FGF+ + S EA
Sbjct: 262 YGDISSAVVMKD-QSGNSRSFGFVNFVSPEAA 292
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 3 ADNCK---IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP-- 57
AD K +++ +S T L+ F YG + +V+++D + +R FGFV F +P
Sbjct: 219 ADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPED 277
Query: 58 -AVAEEVLKKKHKIDGKMVDVKKAAPK------------NGSP---GPYRSTKIFVGGLA 101
A A E L K K D K V KA K GS + ++V L
Sbjct: 278 AARAVEALNGK-KFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLD 336
Query: 102 STVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGK 161
TVT+ ++ F +FGTI VM DP+ +G GF+ + + R +E+NGK
Sbjct: 337 DTVTDEKLRELFAEFGTITSCKVMRDPSGTS-KGSGFVAFSAASEAS----RVLNEMNGK 391
Query: 162 MV 163
MV
Sbjct: 392 MV 393
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
C +++G + ++ +L YF+ +V+ + +D T + G+G+V +S+ AE+ ++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 66 KKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLV 123
K + ++GKM+ + ++ ++ S +FV L +V + F GTI
Sbjct: 106 KLNYSYLNGKMIRITYSS-RDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCK 164
Query: 124 VMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
V D Q RG+GF+ +D+E++ + + +LNGK++ K+
Sbjct: 165 VATDHMGQS-RGYGFVQFDTEDSAKN----AIEKLNGKVLNDKQ 203
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+F+ + + + L + FS G ++ + D + +RG+GFV F A+ ++K
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAIEK- 193
Query: 68 HKIDGKMVDVK--------KAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
++GK+++ K + + + + T ++V L+ T+ + K F Q+G+I
Sbjct: 194 --LNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
VVM D + + R FGF+ +++ E R+ LNGK + K
Sbjct: 252 SSAVVMRDGDG-KSRCFGFVNFENPEDA----ARAVEALNGKKFDDKE 294
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVM---------ESVIIKDRTTRRARGFGFV 52
E D +F I+ +R + ++FS GKV + II DR +RR+RG G+V
Sbjct: 207 ERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYV 266
Query: 53 AFSD-------------PAVAEEVLKKKHKIDGKMVD-VKKAAPKNGSPGPYR--STKIF 96
F D P + + V+ K + + +V AA G GPY + +++
Sbjct: 267 EFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLY 326
Query: 97 VGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSF 155
VG L ++E D +K F+ FG++ +LV + T +GFGF+ + E+A +++ L
Sbjct: 327 VGNLHINMSEDDLRKVFESFGSV-ELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQ 385
Query: 156 HELNGKMVEV 165
E+ G+ ++V
Sbjct: 386 LEIAGRAIKV 395
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++G + +L + F+ G+V+ + +D TTRR+ G+G+V ++ P A L +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 68 H--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
+ ++G+ + V + ++ S IF+ L ++ + F FG I V
Sbjct: 107 NFMALNGRAIRVMYSV-RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
DP+ Q +G+GF+ YD++EA + +LNG ++ K+
Sbjct: 166 VDPSGQS-KGYGFVQYDTDEAAQG----AIDKLNGMLLNDKQ 202
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS---DPAVAEEVL 64
+++ +S + L + F +G VI++D + ++GFGFV F D A A + L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284
Query: 65 K------------KKHKIDGKMVDVKKAAPKNGSPGPYRS--TKIFVGGLASTVTESDFK 110
K K + ++K+ ++ +S + ++V L +VT+ +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 111 KYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVEVK 166
++F FGTI VM DP+ RG GF+ + + EEA R+ E+NGKM+ K
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEAT-----RAITEMNGKMIVTK 395
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
IFI + + + L + FSA+G ++ + D + +++G+GFV + A+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAI--- 190
Query: 68 HKIDGKMVDVKKA--------APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
K++G +++ K+ ++ S + T ++V L+ ++++ + K F +FG
Sbjct: 191 DKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Query: 120 KDLVVMCDPNTQRPRGFGFITY----DSEEAVDSVFLRSF 155
V+M D + +GFGF+ + D+ AVD++ ++F
Sbjct: 251 TSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++G + +L + F+ G+V+ + +D TTRR+ G+G+V ++ P A L +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 68 H--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
+ ++G+ + V + ++ S IF+ L ++ + F FG I V
Sbjct: 107 NFMALNGRAIRVMYSV-RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
DP+ Q +G+GF+ YD++EA + +LNG ++ K+
Sbjct: 166 VDPSGQS-KGYGFVQYDTDEAAQG----AIDKLNGMLLNDKQ 202
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS---DPAVAEEVL 64
+++ +S + L + F +G VI++D + ++GFGFV F D A A + L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284
Query: 65 K------------KKHKIDGKMVDVKKAAPKNGSPGPYRS--TKIFVGGLASTVTESDFK 110
K K + ++K+ ++ +S + ++V L +VT+ +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 111 KYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVEVK 166
++F FGTI VM DP+ RG GF+ + + EEA R+ E+NGKM+ K
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEAT-----RAITEMNGKMIVTK 395
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
IFI + + + L + FSA+G ++ + D + +++G+GFV + A+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAI--- 190
Query: 68 HKIDGKMVDVKKA--------APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
K++G +++ K+ ++ S + T ++V L+ ++++ + K F +FG
Sbjct: 191 DKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Query: 120 KDLVVMCDPNTQRPRGFGFITY----DSEEAVDSVFLRSF 155
V+M D + +GFGF+ + D+ AVD++ ++F
Sbjct: 251 TSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 19/192 (9%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+D ++IG + ++ + F+ G+ + +I+++ T ++ G+GF+ F +VAE
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 63 VLK---------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYF 113
VL+ + + + GP + IFVG LA VT+ F
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT--IFVGDLAPEVTDYMLSDTF 174
Query: 114 DQ-FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKE 172
+G++K V+ D T R +G+GF+ + E +R+ E+NG+ + P
Sbjct: 175 KNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ----MRAMTEMNGQYCSTR---PMR 227
Query: 173 LSPGPNHSPLSV 184
+ P N + L +
Sbjct: 228 IGPAANKNALPM 239
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 31/172 (18%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYF-SAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
E + IF+G ++ + L F + YG V + ++ DRTT R++G+GFV F+D
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD---E 206
Query: 61 EEVLKKKHKIDGKMVDVKK-----AAPKNG---SPGPYRSTK-------------IFVGG 99
E ++ +++G+ + AA KN P Y++T+ IFVGG
Sbjct: 207 NEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGG 266
Query: 100 LASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
L + VT+ + K F QFG + L V P + GF+ Y ++ + +
Sbjct: 267 LDANVTDDELKSIFGQFGEL--LHVKIPPG----KRCGFVQYANKASAEHAL 312
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 6 CK-IFIGGISWDTNQRRLRQYFSAYGKVMESVII-KDRTTRRARGFGFVAFSD---PAVA 60
C+ +++G I + L++ F++ G V S +I KD+++ +GFV + D A+A
Sbjct: 58 CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALA 112
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
L +H + G+ + V A IFVG L+ VT++ + F F +
Sbjct: 113 ILSLNGRH-LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCS 171
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
D VM D T R RGFGF+++ +++ + + +E+NGK + ++
Sbjct: 172 DARVMWDQKTGRSRGFGFVSFRNQQDAQT----AINEMNGKWLSSRQ 214
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
++IG + + ++ L FS G+++ +I+++ T + G+GF+ F A AE L+
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 68 H--KIDGKMVDVKKAAPKNGS-----PGPYRSTKIFVGGLASTVTESDFKKYFD-QFGTI 119
+ ++ G + + GS GP S IFVG LA VT+ ++ F + ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG-----KMVEVKRAVPKE 172
+ V+ DP+T R +G+GF+ + E + R+ E+NG + + + A PK+
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERN----RAMAEMNGLYCSTRPMRISAATPKK 197
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
E +F+G ++ D L + F A Y V + ++ DRTT R++G+GFV F+D +
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES-- 226
Query: 61 EEVLKKKHKIDGKMVDVK--------KAAPKNGSPGPYRSTK------------IFVGGL 100
E ++ +++G+ + P P Y++T+ IFVG +
Sbjct: 227 -EQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAV 285
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+VTE D K F QFG +LV + P +R GF+ Y + + ++ LNG
Sbjct: 286 DQSVTEDDLKSVFGQFG---ELVHVKIPAGKR---CGFVQYANRACAE----QALSVLNG 335
Query: 161 KMV 163
+
Sbjct: 336 TQL 338
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK-- 65
++IG + ++ L F G+ + +I+++ + G+GF+ F + A AE L+
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 66 ---------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQ- 115
+ +++ + A + + GP + +FVG LA VT+ + F
Sbjct: 142 NGAPMPSSEQAFRLNWAQLG---AGERRQAEGPEHT--VFVGDLAPDVTDHMLTETFKAV 196
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSP 175
+ ++K V+ D T R +G+GF+ + A +S +R+ E+NG+ + P P
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRF----ADESEQIRAMTEMNGQYCSSR---PMRTGP 249
Query: 176 GPNHSPLSV 184
N PL++
Sbjct: 250 AANKKPLTM 258
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
++IG + + ++ L FS G+++ +I+++ T + G+GF+ F A AE L+
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 68 H--KIDGKMVDVKKAAPKNGS-----PGPYRSTKIFVGGLASTVTESDFKKYFD-QFGTI 119
+ ++ G + + GS GP S IFVG LA VT+ ++ F + ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG-----KMVEVKRAVPKE 172
+ V+ DP+T R +G+GF+ + E + R+ E+NG + + + A PK+
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERN----RAMAEMNGLYCSTRPMRISAATPKK 197
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
KIF+GGIS+ T++ LR+ FS YG+V+++ II DR T R+RGF FV F+ A ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 66 -KKHKIDGKMVDVKKAAP 82
+ G+ + V A
Sbjct: 94 LDGQDLHGRRIRVNYATE 111
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
S+KIFVGG++ + E ++ F ++G + D ++ D T R RGF F+T+ S E +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 152 LRSFHELNGKMVEVKRAVP 170
+L+G+ + V A
Sbjct: 93 QLDGQDLHGRRIRVNYATE 111
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
+ K+FIGG+++ ++ LR+ F+ YG+V+++ +I DR T R+RGFGFV F+ A +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 65 KK--KHKIDGKMVDVKKA 80
+ + G++V V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
S+K+F+GG+A ++ E ++ F ++G + D V+ D T R RGFGF+T+ S EA S
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 152 LR-SFHELNGKMVEVKRA 168
+L+G++V+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 30/170 (17%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ IF+G +S D + L + FS Y V + ++ D T R++G+GFV F D +
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 64 LKKKH--KIDGKMVDVKKAAPK-------------NGS----PGPYRSTKIFVGGLASTV 104
+ + + K + + + A P+ NG+ G +T IFVGGL S+V
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 105 TESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY----DSEEAVDSV 150
T+ D K+ F++FG I + + +G GF+ + ++EEA++ +
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 359
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ F+GG++W TN L++ FS +G V++S II DR + R+RGFGFV F D + +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 8/173 (4%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
A N K++ G + ++ + L Q + ++ +R T ++RGF FV S+
Sbjct: 82 AVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNI 141
Query: 63 VLKKKHKID--GKMVDVK---KAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
++ + G+ + V K P P K+FVG L+ TVT F + G
Sbjct: 142 IIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF--LRSFHELNGKMVEVKRA 168
+ V+ D +T R RG+GF+ Y S+ +++ L F EL G+ + V A
Sbjct: 202 DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGF-ELEGRAIRVNLA 253
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+S+ T ++ L + FS G+V+E+ I+ DR + R++GFGFV F+ A++ L +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 67 --KHKIDGK--MVDVKKAAPKNGSPGPY 90
+++G+ VD KA G G Y
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGGGY 122
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSV 150
++K+F+GGL+ TE + F + G + + ++ D + R +GFGF+T+ S +EA ++
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 151 FLRSFHELNGKMVEVKRAVPKELSPGPNHSPLS 183
+ +LNG+ + V A K+ G P++
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIA 125
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
IF+ G WDT Q L+ F +YG++ E ++ D+ T R +G+GFV F A E LK+
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 68 HK-IDGKMVDVKKAAPKNGSPG 88
K + ++V A+ K G G
Sbjct: 470 EKRMYNRIVVCNLASEKPGKAG 491
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSV 150
+T+++VG L+ T T+ ++ F +G + D +VM D T R RGFGF+TY S EA +V
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 151 FLRSFHELNGKMVEVK 166
ELNG+ V VK
Sbjct: 62 SGMDGKELNGRRVSVK 77
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
++++G +S T LR+ FS YG V+++++++DR T R+RGFGFV +S + AE +
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 66 KKHKIDGKMVDVKKAAPK 83
+DGK ++ ++ + K
Sbjct: 63 ---GMDGKELNGRRVSVK 77
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 30/170 (17%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ IF+G ++ D + L + FS Y V + ++ D T R++G+GFV F D +
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 64 LKKKH--KIDGKMVDVKKAAPK--NG---------------SPGPYRSTKIFVGGLASTV 104
+ + + K + + + A P+ NG S G +T IFVGGL S+V
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 105 TESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY----DSEEAVDSV 150
T+ D K+ F +FG I + + +G GF+ + ++EEA++ +
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 361
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
S ++FV L++ T+ ++ F FG IK+ ++ D TQRP+GFGFIT+DSE+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR--- 62
Query: 152 LRSFHELNGKMVE 164
++ L+GK+V+
Sbjct: 63 -KALKSLDGKIVD 74
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
+ ++F+ +S T + LRQ FS +G++ E+ +I+D T+R +GFGF+ F A + L
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 65 KKKHKIDGKMVD 76
K +DGK+VD
Sbjct: 66 K---SLDGKIVD 74
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAF-SDPAVAEEV-LK 65
+F+ + + ++L FSA+GKV+ + +D + ++G+GFV F SD +V
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 66 KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
I + + V + T ++V L T T++D K+ F +FG I VVM
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVK 166
D + R FGF+ ++ EA + + ++NG +V+ K
Sbjct: 152 KD-GEGKSRRFGFVNFEKAEAA----VTAIEKMNGVVVDEK 187
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ W+T + L F YG++ E ++ D+ T +A+GFGFV F A+E LK+
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 KHK------IDGKMVDVKKAAPKNG--SPGPYRSTKIFVGGLA 101
K ++ + AA G PGP KI +G +A
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGP---VKISMGSMA 204
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ W+T + L F YG++ E ++ D+ T +A+GFGFV F A+E LK+
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 KHK------IDGKMVDVKKAAPKNG--SPGPYRSTKIFVGGLA 101
K ++ + AA G PGP KI +G +A
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGP---VKISMGSMA 204
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
KIF+GG+S T+ L++ F ++GK++++V++ DR + +RGFGFV + VA ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 66 -KKHKIDGKMVDVKKA 80
+ ++DG+++ V A
Sbjct: 97 MQNKELDGRIIGVHPA 112
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
+KIFVGGL+ + K+ F FG I D VV+ D + RGFGF+TYDS E ++ +
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA-M 94
Query: 153 RSFH--ELNGKMVEVKRA 168
++ EL+G+++ V A
Sbjct: 95 QAMQNKELDGRIIGVHPA 112
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
IF+ G+ WDT L+ F YG++ E ++ D+ T RA+GFGFV F A LK
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 68 HK-IDGKMVDVKKAAPKN-GSP----GPYRSTKI 95
K + + V A P N G P P S KI
Sbjct: 225 EKRMYNRTVSCLPARPFNSGKPREQQQPVESVKI 258
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++G + ++ L FS +V +I+++ T ++ G+GFV F + AEE L+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 68 HKIDGKMVDVKKAAPKNG---SPGPYRSTK------IFVGGLASTVTESDFKKYFD-QFG 117
+ M + ++ N S G R+++ IFVG LA V+++ + F ++
Sbjct: 181 SGV--TMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG-----KMVEVKRAVPKE 172
++K V+ D NT R +G+GF+ + E R+ E+NG + + V A PK
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERS----RAMTEMNGAFCSSRQMRVGIATPKR 294
Query: 173 LS 174
+
Sbjct: 295 AA 296
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 38/227 (16%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ IF+G ++ D + L + F+ Y V + ++ D T R++G+GFV F D
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 64 LKKKHK--IDGKMVDVKKAAPK--------NGSP----------------GPYRSTKIFV 97
+ + + + + V A PK NGS G ++ IFV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 98 GGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHE 157
GGL + VTE D + F FG + + + +G GF+ + + ++ + +
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAE----EAIGN 381
Query: 158 LNGKMVEVKRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYC 204
LNG ++ K V PN S +G S G+ GY
Sbjct: 382 LNGTVIG-KNTVRLSWGRSPNKQWRSDSGNQWNGGYSRGQGYNNGYA 427
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 6 CK-IFIGGISWDTNQRRLRQYFSAYGKVMESVII-KDRTTRRARGFGFVAFSD---PAVA 60
C+ ++ G I + L++ F++ G + +I KD+++ +GFV + D ++A
Sbjct: 62 CRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMA 116
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
L +H I G+ + V A IFVG L+ VT++ F F +
Sbjct: 117 IMTLNGRH-IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCS 175
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
D VM D T R RGFGF+++ +++ + + +E+NGK V ++
Sbjct: 176 DARVMWDQKTGRSRGFGFVSFRNQQDAQT----AINEMNGKWVSSRQ 218
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 38/172 (22%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK- 66
IF+G +S + L FSA+ ++ ++ D+ T R+RGFGFV+F + A+ + +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 67 ------------------------KHKIDGKMV---------DVKKAAPKNGSPGPYRST 93
KH DGK V D ++ + ++ + T
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFT 269
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEE 145
++VG L+ VT+ D + F G V+ + QR +GFGF+ Y++ +
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGA----GVIEEVRVQRDKGFGFVRYNTHD 317
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 91 RSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSV 150
R TKI+V GL YF++FG I V+CD TQR +GFGF+T+ E+
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 151 FLRSFHELNGKMVEVKRA 168
H ++G+ V K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KI++ G+ W T L YF +G+++ + ++ D T+R++GFGFV F + A +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 67 -KHKIDGKMVDVKKA 80
H IDG+ V+ K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+SW +++ L+ FS++G+V E I D+ + R+RGFGFV F++ + L
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG---DALSA 98
Query: 67 KHKIDGK 73
K +DGK
Sbjct: 99 KDAMDGK 105
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 34/182 (18%)
Query: 8 IFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
IF+G ++ D L + F A Y V + ++ DR T R +G+GFV FSD E ++
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSD---ESEQIRA 213
Query: 67 KHKIDG-----KMVDVKKAAPKNGSPGP---YRS-------------TKIFVGGLASTVT 105
+++G + + + AA K G G Y+S T +FVGGL ++VT
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 106 ESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH--ELNGKMV 163
+ K F Q+G I + + P +R GF+ + SE++ LR + +L G V
Sbjct: 274 DDHLKNVFSQYGEIVHVKI---PAGKR---CGFVQF-SEKSCAEEALRMLNGVQLGGTTV 326
Query: 164 EV 165
+
Sbjct: 327 RL 328
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 3 ADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
AD + ++IG + + ++ L F+ G+++ + +I+++ T + G+GF+ F+ A AE
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 62 EVLKK----------KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKK 111
VL+ + ++ SP IFVG LA+ VT+ +
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP----DYTIFVGDLAADVTDYILLE 173
Query: 112 YFD-QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
F + ++K V+ D T R +G+GF+ + E S +R+ E+NG
Sbjct: 174 TFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE----SEQIRAMTEMNG 219
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KI++GG+ W+T LR YF +G ++ ++ DR T R+ G+GFV F D A +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 67 -KHKIDGK 73
K IDG+
Sbjct: 113 PKPVIDGR 120
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 91 RSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEA 146
R TKI+VGGL + YF+QFG I + ++CD T R G+GF+T+ D+E A
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESA 106
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK- 66
+F+ GIS+ + + L Q FS YG+V++ +I D+ R +GF +V FS AE+ L +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 67 -KHKIDGKMV--DVKKAAPKN 84
+DG++V D KAA N
Sbjct: 83 NAQLVDGRVVILDTTKAAKHN 103
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
S+ +FV G++ + TE + F Q+G + + V+ D RP+GF ++T+ S+E +
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 152 LRSFHELNGKMVEVKRAVPKELSPGPNHSP 181
L ELN ++V+ R V + + H+P
Sbjct: 80 L----ELNAQLVD-GRVVILDTTKAAKHNP 104
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KI++GG+ W T + L +F +G+++ ++ DR T R++G+GFV F D A K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 67 KH-KIDGKMVDVKKA 80
+ I+G++ + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TKI+VGGL T + +F +FG I + V+CD T R +G+GF+T+ E+
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 153 RSFHELNGKMVEVKRA-VPKELSPG---PNHSPLSVYNYD 188
+ G++ K A V ++ P P++ P + YD
Sbjct: 73 DPNPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQLLPRYD 112
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 22 LRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKKH--KIDGKMVDVKK 79
L + F +G ++ ++++ +++GFGFV F A H + GK + V K
Sbjct: 128 LERMFCPFGSILSCKVVEENG--QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Query: 80 AAPKN---GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGF 136
K+ G ST ++V L TVT+ F Q+GT+ +VVM D R RGF
Sbjct: 186 FINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGF 244
Query: 137 GFITY----DSEEAVDSV 150
GF+ + ++++A++S+
Sbjct: 245 GFVNFCNPENAKKAMESL 262
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 15/170 (8%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
E ++ + W + +R F YG V++ + + R RG F+ + P A
Sbjct: 90 EISKTRLIAQNVPWTSTPEDIRSLFEKYGSVID-IEMSMHKKERNRGLVFIEMASPEEAA 148
Query: 62 EVLK---------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKY 112
LK ++ K+D KK +P P + +FV LA K++
Sbjct: 149 TALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEF 208
Query: 113 FD-QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGK 161
FD G + V+ N +R G+GF+++ +++ ++ + E GK
Sbjct: 209 FDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI----EFQGK 254
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 3 ADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
AD + ++IG + + ++ L F+ G+++ + +I+++ T + G+GF+ F+ A AE
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 62 EVLKK----------KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKK 111
VL+ + ++ SP IFVG LA+ VT+ +
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP----DYTIFVGDLAADVTDYILLE 173
Query: 112 YFD-QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
F + ++K V+ D T R +G+GF+ + E S +R+ E+NG
Sbjct: 174 TFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE----SEQIRAMTEMNG 219
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 8 IFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
IF+G ++ D L + F A Y V + ++ DR T R +G+GFV FSD E ++
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSD---ESEQIRA 213
Query: 67 KHKIDG-----KMVDVKKAAPKNGSPGP---YRS-------------TKIFVGGLASTVT 105
+++G + + + AA K G G Y+S T +FVGGL ++VT
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 106 ESDFKKYFDQFGTI 119
+ K F Q+G I
Sbjct: 274 DDHLKNVFSQYGEI 287
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 17/226 (7%)
Query: 5 NCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSD---PAVA 60
C+ +++G I + L++ F+ G V +I+ + +GFV + D +A
Sbjct: 52 TCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSAGLA 107
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
L +H + G+ + V A IFVG L+ VT++ F + T
Sbjct: 108 ILSLNGRH-LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCS 166
Query: 121 DLVVMCDPNTQRPRGFGFITY----DSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPG 176
D VM D T R RGFGF+++ D++ A+D + + L + + A S
Sbjct: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI---TGKWLGSRQIRCNWATKGATSGE 223
Query: 177 PNHSPLSVYNYDL-SGVNSFINGFTQGYCPSNVGGYGLCVDGTVSP 221
S S +L SGV+ T G P N Y G ++P
Sbjct: 224 DKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAP 269
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 5 NCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSD---PAVA 60
C+ +++G I + L++ F+ G V +I+ + +GFV + D +A
Sbjct: 52 TCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSAGLA 107
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
L +H + G+ + V A IFVG L+ VT++ F + T
Sbjct: 108 ILSLNGRH-LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCS 166
Query: 121 DLVVMCDPNTQRPRGFGFITY----DSEEAVDSV 150
D VM D T R RGFGF+++ D++ A+D +
Sbjct: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D + L+ + + G+V E I++++ + +G+ FV F +A E +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 67 KHKID--GKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
+ D GK + K+ ++F+G + ESD KK ++ G +V
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH---------RLFLGNVPRNWMESDIKKAANRIGPGVQIVE 203
Query: 125 M-CDP-NTQRPRGFGFITY 141
+ +P N R RGF FI Y
Sbjct: 204 LPKEPQNMGRNRGFAFIEY 222
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D + L+ + + G+V E I++++ + +G+ FV F +A E +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 67 KHKID--GKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
+ D GK + K+ ++F+G + ESD KK ++ G +V
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH---------RLFLGNVPRNWMESDIKKAANRIGPGVQIVE 203
Query: 125 M-CDP-NTQRPRGFGFITY 141
+ +P N R RGF FI Y
Sbjct: 204 LPKEPQNMGRNRGFAFIEY 222
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK++V GL+ TE + F+QFG + + ++ D RP+GF F+ Y++EE +
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA----M 132
Query: 153 RSFHELNGKMV--------------EVKRAVPKELSPGPNHSPLSVYNY 187
++ ++GK + ++ RA P+ P P P + +
Sbjct: 133 KAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTFRTW 181
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FI G+S+ T+++ LR F +G+++E II D+ ++R++G+ F+ ++ A LK+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 67 KH--KIDGKM--VDVKKAAP 82
+ I+G M VDV K P
Sbjct: 343 MNGKIINGWMIVVDVAKTKP 362
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 89 PYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVD 148
P ++ K+F+ GL+ +E + F+ FG + ++ ++ D ++R +G+ F+ Y +EEA
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 149 SVFLRSFHELNGKMV 163
+ + E+NGK++
Sbjct: 338 T----ALKEMNGKII 348
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 19/171 (11%)
Query: 6 CK-IFIGGISWDTNQRRLRQYFSAYGKVMESVII-KDRTTRRARGFGFVAFSD---PAVA 60
C+ ++ G I + L++ F++ G + +I KD+++ +GFV + D ++A
Sbjct: 62 CRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMA 116
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI- 119
L +H I G+ + V A IFVG L+ VT++ F F +
Sbjct: 117 IMTLNGRH-IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCS 175
Query: 120 ---KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
+D VM D T R RGFGF+++ +++ + + +E+NGK V ++
Sbjct: 176 SYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT----AINEMNGKWVSSRQ 222
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 42/176 (23%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKV----MESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
IF+G +S + L FSA+ ++ ++ D+ T R+RGFGFV+F + A+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 64 LKK-------------------------KHKIDGKMV---------DVKKAAPKNGSPGP 89
+ + KH DGK V D ++ + ++
Sbjct: 210 INEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENN 269
Query: 90 YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEE 145
+ T ++VG L+ VT+ D + F G V+ + QR +GFGF+ Y++ +
Sbjct: 270 PQFTTVYVGNLSPEVTQLDLHRLFYTLGA----GVIEEVRVQRDKGFGFVRYNTHD 321
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++G +SW + L F+ GKV+E+ +I DR + R++GFGFV S ++EV K
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS---SQEVQKA 314
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYR 91
+ ++G +D ++ P R
Sbjct: 315 INSLNGADLDGRQIRVSEAEARPPR 339
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++G +SW + L F+ GKV+E+ +I DR + R++GFGFV S ++EV K
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS---SQEVQKA 314
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYR 91
+ ++G +D ++ P R
Sbjct: 315 INSLNGADLDGRQIRVSEAEARPPR 339
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++G +SW + L F+ GKV+E+ +I DR + R++GFGFV S ++EV K
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS---SQEVQKA 314
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYR 91
+ ++G +D ++ P R
Sbjct: 315 INSLNGADLDGRQIRVSEAEARPPR 339
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++G +SW + L F+ GKV+E+ +I DR + R++GFGFV S ++EV K
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS---SQEVQKA 335
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYR 91
+ ++G +D ++ P R
Sbjct: 336 INSLNGADLDGRQIRVSEAEARPPR 360
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
++ + W + +R F YG V++ + + R RG F+ + P A L
Sbjct: 33 KTRLIAQNVPWTSTPEDIRSLFEKYGSVID-IEMSMHKKERNRGLVFIEMASPEEAATAL 91
Query: 65 K---------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFD- 114
K ++ K+D KK +P P + +FV LA K++FD
Sbjct: 92 KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGK 161
G + V+ N +R G+GF+++ +++ ++ + E GK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI----EFQGK 194
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS-----DPAVAE 61
K+++ IS + +RQ F YG V E ++ KD+ T + F+ + + A+A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA- 169
Query: 62 EVLKKKHKIDGKMVDVK----KAAPKNGSPGPYR---STKIFVGGLASTVTESDFKKYFD 114
L ++ G+M+ VK +A + P + + K++V L T+ + + F
Sbjct: 170 -ALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFS 228
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
++G I+D+ + D + + RG+ F+ + +E L + LNG
Sbjct: 229 RYGIIEDIYMALD-DMKICRGYAFVQFSCKEMA----LAAIKALNG 269
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 91 RSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY 141
R TKIFVG L T D ++YF+QFG + D V+ + R +G+GFIT+
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+G ++W T LR+YF +G+V+++ ++ + R++G+GF+ F D L+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 67 -KHKIDGKMVDVKKAA 81
K IDG+ + A+
Sbjct: 73 SKPIIDGRTTNCNLAS 88
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++F+ G+S T +L+ F+++G+++++ +I DR + R++GFGFV + A E+ K
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY---ATIEDAEKA 91
Query: 67 KHKIDGKMVD 76
K +++ K +D
Sbjct: 92 KAEMNAKFLD 101
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 95 IFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLR 153
++VGGLA V ES F FG IKD+ D Q+ R FGF+T+ + E+A ++
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 154 SFHELNGKMVEVKRAVPKELSPGPN 178
EL G+++ V A+P+++ G
Sbjct: 75 DGAELYGRVLTVNYALPEKIKGGEQ 99
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+ + W + + + F G V II+ + + RGF FV + A+ + K
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKN-RGFAFVTMASGEEAQAAIDK 154
Query: 67 --KHKIDGKMVDV------KKAAPK------NGSPGPYRSTKIFVGGLASTVTESDFKKY 112
++ G+++ V KK PK + +PG R K++V LA + ++
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRH-KLYVSNLAWKARSTHLREL 213
Query: 113 FD--QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
F F + VV DP R G+GF+++ + E ++ + LNGK +
Sbjct: 214 FTAADFNPVSARVVFADPEG-RSSGYGFVSFATREEAENAITK----LNGKEI 261
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+IF+G + ++ L++ F G+V E I+K+ T++++G F+ F A E+ +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRF---ATVEQAKRA 271
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT--IKDLVV 124
++ M++ KK G + +FVG + T ++ +G + D+ +
Sbjct: 272 VKELKSPMINGKKC----GVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITL 327
Query: 125 MCDP-NTQRPRGFGFITYDSE-EAVDS 149
+ D N RG+ F+ + S +A+D+
Sbjct: 328 VEDSNNVNMNRGYAFLEFSSRSDAMDA 354
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 90 YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDS 149
Y STK+++GGL+ E K F F + + VM + T R RG+GF+ + SE++ +S
Sbjct: 28 YMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANS 87
Query: 150 -VFLRSFHELNG 160
+ + ELNG
Sbjct: 88 AISAMNGQELNG 99