Miyakogusa Predicted Gene

Lj0g3v0000089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0000089.1 Non Chatacterized Hit- tr|E0CTW4|E0CTW4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.22,2e-19,SUBFAMILY NOT NAMED,NULL; RING FINGER PROTEIN
24-RELATED,NULL; no description,Zinc finger, RING/FYVE,CUFF.43.1
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58720.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    83   6e-17
AT3G58720.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    82   2e-16

>AT3G58720.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:21716920-21717892 REVERSE LENGTH=238
          Length = 238

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 18/149 (12%)

Query: 21  TLQGLIFPAQPHSRQQTNVPNGDIGRGFNPRLRQIFQQPHSRSTVQTSTQAPRVEENTKS 80
            +Q L+ P+  H+R Q  + N +  R     L  + Q  H++ST   S+     + N + 
Sbjct: 37  VIQDLVPPS--HTRHQIPIRNSNNLR--RQHLEALRQAVHNQSTRPESSSRSSSQTNEED 92

Query: 81  TALSKLKKVIYNNNPTPKS-LARRVSLYYRD-NSNALKKRVKEK---DEDGKRC------ 129
             L  L K  YN  P PKS L R +SLYYR+ N  +   R  +    +ED KRC      
Sbjct: 93  EILKHLTKETYN--PVPKSTLLRSLSLYYRNKNPGSESSRNTQNLSGEEDDKRCSVCLED 150

Query: 130 -DPKEEVMLTPCNHMFHEDCIVPWLTSKG 157
            +PKE VMLTPC HMFHE+CIVPWL +KG
Sbjct: 151 FEPKETVMLTPCKHMFHEECIVPWLKTKG 179


>AT3G58720.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:21716920-21717908 REVERSE LENGTH=266
          Length = 266

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 17/162 (10%)

Query: 8   IVNPMKCLCFTDLTLQGLIFPAQPHSRQQTNVPNGDIGRGFNPRLRQIFQQPHSRSTVQT 67
           I +P+     T ++    + P   H+R Q  + N +  R     L  + Q  H++ST   
Sbjct: 51  IDDPISAYSRTSISSTVDLVPPS-HTRHQIPIRNSNNLR--RQHLEALRQAVHNQSTRPE 107

Query: 68  STQAPRVEENTKSTALSKLKKVIYNNNPTPKS-LARRVSLYYRD-NSNALKKRVKEK--- 122
           S+     + N +   L  L K  YN  P PKS L R +SLYYR+ N  +   R  +    
Sbjct: 108 SSSRSSSQTNEEDEILKHLTKETYN--PVPKSTLLRSLSLYYRNKNPGSESSRNTQNLSG 165

Query: 123 DEDGKRC-------DPKEEVMLTPCNHMFHEDCIVPWLTSKG 157
           +ED KRC       +PKE VMLTPC HMFHE+CIVPWL +KG
Sbjct: 166 EEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKG 207