Miyakogusa Predicted Gene

Lj6g3v2287350.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v2287350.1 tr|A9PGS1|A9PGS1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1116974 PE=2
SV=1,77.73,0,RNA-BINDING PROTEIN RELATED,NULL; K homology RNA-binding
domain,K Homology domain; no description,NU,CUFF.61030.1
         (771 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63759 similar to UniRef100_Q1SL18 Cluster: KH; n=1; M...  1413   0.0  

>gnl|LJGI|TC63759 similar to UniRef100_Q1SL18 Cluster: KH; n=1; Medicago
           truncatula|Rep: KH - Medicago truncatula (Barrel medic),
           partial (57%)
          Length = 827

 Score = 1413 bits (713), Expect = 0.0
 Identities = 724/727 (99%), Gaps = 3/727 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggagagaggatcccatctgggacttatttccagttccctcctcccggacccggactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atgggagagaggatcccatctgggacttatttccagttccctcctcccggacccggactt 160

                                                                       
Query: 61  cctccatcgcctattaggtcctcctctattccttcagatcgcgaaagatatttggctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cctccatcgcctattaggtcctcctctattccttcagatcgcgaaagatatttggctgaa 220

                                                                       
Query: 121 ttattggcagagaggcaaaagttgggaccatttgtgcaagttcttccacaatgtaccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttattggcagagaggcaaaagttgggaccatttgtgcaagttcttccacaatgtaccagg 280

                                                                       
Query: 181 ctcataactcaagaaatcagacggataacgggctttaaccaaggtttcattgaacatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctcataactcaagaaatcagacggataacgggctttaaccaaggtttcattgaacatgat 340

                                                                       
Query: 241 agacctgagtcagacagtccgtttaggtccttaagtcaacatccaaatagtaggccaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agacctgagtcagacagtccgtttaggtccttaagtcaacatccaaatagtaggccaatg 400

                                                                       
Query: 301 gatttggagggatggcctgctgtaccaattgaggacaatggaaatctgcaaagaatagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gatttggagggatggcctgctgtaccaattgaggacaatggaaatctgcaaagaatagca 460

                                                                       
Query: 361 tcatttcaagcaccgcctatgggttggcctgggacacaaggagttccgacgacacctgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcatttcaagcaccgcctatgggttggcctgggacacaaggagttccgacgacacctgta 520

                                                                       
Query: 421 gtgaagagagttatcaggcttgatgtccctgtagagaaatatccaaat---tataatttt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 521 gtgaagagagttatcaggcttgatgtccctgtagagaaatatccaaatcagtataatttt 580

                                                                       
Query: 478 gttggccgaattttgggacctcgcgggaactcattgaaaagagtggaagccatgacagaa 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gttggccgaattttgggacctcgcgggaactcattgaaaagagtggaagccatgacagaa 640

                                                                       
Query: 538 tgtagggtttatatcagaggctgtggctctgtgaaggattctattaaggaagagaagctt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgtagggtttatatcagaggctgtggctctgtgaaggattctattaaggaagagaagctt 700

                                                                       
Query: 598 aaagataaacctggatatgagcaccttaatgaaccattgcatgtgttggtggaggcagaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaagataaacctggatatgagcaccttaatgaaccattgcatgtgttggtggaggcagaa 760

                                                                       
Query: 658 tttccagaggatataatcaattctcgcttggatcatgcggtggcgatactagaaaatctt 717
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttccagaggatataatcaattctcgcttggatcatgcggtggcgatactagaaaatctt 820

                  
Query: 718 ttgaagc 724
           |||||||
Sbjct: 821 ttgaagc 827