Miyakogusa Predicted Gene
- Lj6g3v2287350.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2287350.1 tr|A9PGS1|A9PGS1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1116974 PE=2
SV=1,77.73,0,RNA-BINDING PROTEIN RELATED,NULL; K homology RNA-binding
domain,K Homology domain; no description,NU,CUFF.61030.1
(771 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63759 similar to UniRef100_Q1SL18 Cluster: KH; n=1; M... 1413 0.0
>gnl|LJGI|TC63759 similar to UniRef100_Q1SL18 Cluster: KH; n=1; Medicago
truncatula|Rep: KH - Medicago truncatula (Barrel medic),
partial (57%)
Length = 827
Score = 1413 bits (713), Expect = 0.0
Identities = 724/727 (99%), Gaps = 3/727 (0%)
Strand = Plus / Plus
Query: 1 atgggagagaggatcccatctgggacttatttccagttccctcctcccggacccggactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atgggagagaggatcccatctgggacttatttccagttccctcctcccggacccggactt 160
Query: 61 cctccatcgcctattaggtcctcctctattccttcagatcgcgaaagatatttggctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cctccatcgcctattaggtcctcctctattccttcagatcgcgaaagatatttggctgaa 220
Query: 121 ttattggcagagaggcaaaagttgggaccatttgtgcaagttcttccacaatgtaccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttattggcagagaggcaaaagttgggaccatttgtgcaagttcttccacaatgtaccagg 280
Query: 181 ctcataactcaagaaatcagacggataacgggctttaaccaaggtttcattgaacatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctcataactcaagaaatcagacggataacgggctttaaccaaggtttcattgaacatgat 340
Query: 241 agacctgagtcagacagtccgtttaggtccttaagtcaacatccaaatagtaggccaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agacctgagtcagacagtccgtttaggtccttaagtcaacatccaaatagtaggccaatg 400
Query: 301 gatttggagggatggcctgctgtaccaattgaggacaatggaaatctgcaaagaatagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gatttggagggatggcctgctgtaccaattgaggacaatggaaatctgcaaagaatagca 460
Query: 361 tcatttcaagcaccgcctatgggttggcctgggacacaaggagttccgacgacacctgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcatttcaagcaccgcctatgggttggcctgggacacaaggagttccgacgacacctgta 520
Query: 421 gtgaagagagttatcaggcttgatgtccctgtagagaaatatccaaat---tataatttt 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 521 gtgaagagagttatcaggcttgatgtccctgtagagaaatatccaaatcagtataatttt 580
Query: 478 gttggccgaattttgggacctcgcgggaactcattgaaaagagtggaagccatgacagaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gttggccgaattttgggacctcgcgggaactcattgaaaagagtggaagccatgacagaa 640
Query: 538 tgtagggtttatatcagaggctgtggctctgtgaaggattctattaaggaagagaagctt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgtagggtttatatcagaggctgtggctctgtgaaggattctattaaggaagagaagctt 700
Query: 598 aaagataaacctggatatgagcaccttaatgaaccattgcatgtgttggtggaggcagaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaagataaacctggatatgagcaccttaatgaaccattgcatgtgttggtggaggcagaa 760
Query: 658 tttccagaggatataatcaattctcgcttggatcatgcggtggcgatactagaaaatctt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttccagaggatataatcaattctcgcttggatcatgcggtggcgatactagaaaatctt 820
Query: 718 ttgaagc 724
|||||||
Sbjct: 821 ttgaagc 827