Miyakogusa Predicted Gene

Lj6g3v2274500.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v2274500.1 Non Chatacterized Hit- tr|C5XRC0|C5XRC0_SORBI
Putative uncharacterized protein Sb03g041420
OS=Sorghu,37.1,0.000000002,seg,NULL; coiled-coil,NULL,CUFF.60982.1
         (912 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP053514                                                      86   4e-16

>gnl|LJGI|BP053514 
          Length = 478

 Score = 85.7 bits (43), Expect = 4e-16
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 748 atggaggaattgaaagtggagttggagagaatggcaggatatgaagcacatggtgatgat 807
           ||||| |||||||||||||||||||||||||| ||||| |||||| ||||   || ||||
Sbjct: 431 atggaagaattgaaagtggagttggagagaatagcaggttatgaaacacaatatggtgat 372

                                          
Query: 808 atccaagaaaaagttgaaaatgtgaagagtt 838
           |||||||||||| |||| ||  |||||||||
Sbjct: 371 atccaagaaaaatttgataacatgaagagtt 341



 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 865 gagactataacagggcaacttgatgatttctttgatgaaatagtagaa 912
           ||||||||| ||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 335 gagactatatcagtgcagcttgatgatttctttaatgaaatagtagaa 288