Miyakogusa Predicted Gene
- Lj6g3v2243320.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2243320.1 tr|Q9C8Z3|Q9C8Z3_ARATH Agenet domain-containing
protein OS=Arabidopsis thaliana GN=F5E6.15 PE=4
SV=1,29.63,1e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Tudor-like domain present in plant sequences,Tudor-,CUFF.60990.1
(963 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonucl... 1893 0.0
gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease Y... 105 5e-22
>gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonuclease H; n=1;
Synechococcus sp. CC9311|Rep: Ribonuclease H -
Synechococcus sp. (strain CC9311), partial (6%)
Length = 1415
Score = 1893 bits (955), Expect = 0.0
Identities = 961/963 (99%)
Strand = Plus / Plus
Query: 1 atgacatccaaacccgcttcacccttccagaaacctggcactgaggttgaaatcttttcc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atgacatccaaacccgcttaacccttccagaaacctggcactgaggttgaaatcttttcc 261
Query: 61 aaaggtgacgaaggcatccgcatctggtccgtcggcaaggtcatccacgggaaccatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaggtgacgaaggcatccgcatctggtccgtcggcaaggtcatccacgggaaccatagt 321
Query: 121 catgtcatggtggagtatacttactgcgagcaaggcaccaatccccgggtagaattcgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catgtcatggtggagtatacttactgcgagcaaggcaccaatccccgggtagaattcgtg 381
Query: 181 agcattgacaatctccggccacgccctccgctgaagccccaccatgacttcaagtccggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agcattgacaatctccggccacgccctccgctgaagccccaccatgacttcaagtccggc 441
Query: 241 gacaaggtggacacctacaacgacaaaggcagctggttggagggtcacataaccagcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gacaaggtggacacctacaacgacaaaggcagctggttggagggtcacataaccagcaca 501
Query: 301 ttaagcgatggcagatccttcgtgtgttataatgaccccaatcaaaagttcttgtttccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaagcgatggcagatccttcgtgtgttataatgaccccaatcaaaagttcttgtttccc 561
Query: 361 aatgagaagctcagggcgcaccatgaatggatcgatgaccattgggggcctccaacacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatgagaagctcagggcgcaccatgaatggatcgatgaccattgggggcctccaacacaa 621
Query: 421 caaccaaagaaggcggaacaggagttgtttagaaagggcgactgggttgaggtttccagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caaccaaagaaggcggaacaggagttgtttagaaagggcgactgggttgaggtttccagt 681
Query: 481 gacgtggacggttatctagaaacttggtttcttgctgaagttgttgaggtaagggtacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gacgtggacggttatctagaaacttggtttcttgctgaagttgttgaggtaagggtacaa 741
Query: 541 gggaagttcaagtaccttgttcggtacaagcatttactggacgataactctcccaagtat 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 742 gggaagttcaagtaccttgttcggtacaagcatttactggatgataactctcccaagtat 801
Query: 601 cttgaagaggagattgatgcccaacatataaggcctcttgcgcccaatactagagatggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cttgaagaggagattgatgcccaacatataaggcctcttgcgcccaatactagagatggt 861
Query: 661 gatgctaaacttggactagtgggcaaagttgatacttggcatattggtgattgtgatgct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gatgctaaacttggactagtgggcaaagttgatacttggcatattggtgattgtgatgct 921
Query: 721 aaatataaactaggtgatagagttgatgcttggtctctttcgggctggaggtatgctaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 aaatataaactaggtgatagagttgatgcttggtctctttcgggctggaggtatgctaag 981
Query: 781 attattgaggttcagaacgataacatatataaagttttcttgaagggtgacgaacaagaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 attattgaggttcagaacgataacatatataaagttttcttgaagggtgacgaacaagaa 1041
Query: 841 aaggataactttgaccccatcacattgagacggcattatgactgggttgatcgcaaatgg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 aaggataactttgaccccatcacattgagacggcattatgactgggttgatcgcaaatgg 1101
Query: 901 gaaatagcttctcagggcagcagctgtagctctgatgaggagtacggatttgctcaaatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 gaaatagcttctcagggcagcagctgtagctctgatgaggagtacggatttgctcaaatt 1161
Query: 961 tag 963
|||
Sbjct: 1162 tag 1164
>gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease YjgP/YjgQ; n=1;
Nitrococcus mobilis Nb-231|Rep: Permease YjgP/YjgQ -
Nitrococcus mobilis Nb-231, partial (5%)
Length = 1291
Score = 105 bits (53), Expect = 5e-22
Identities = 161/197 (81%), Gaps = 10/197 (5%)
Strand = Plus / Plus
Query: 354 gtttcccaatgagaagctcagggcgcaccatgaatggatcgatgaccattgggggcctcc 413
||||||||| ||||| |||||| | |||| |||||||||||||| ||||||| ||| ||
Sbjct: 411 gtttcccaaagagaatctcaggacccaccgcgaatggatcgatgatcattgggagccacc 470
Query: 414 aacacaacaaccaaagaaggcggaacaggagttgtttagaaagggcgactgggttgaggt 473
|| ||||||| |||| |||||| |||| |||| ||||||| |||||||||
Sbjct: 471 aatccaacaacaaaag---------caggagctgttcagaataggcgacttggttgaggt 521
Query: 474 ttccagtgacg-tggacggttatctagaaacttggtttcttgctgaagttgttgaggtaa 532
||||||||| | |||| ||||||| || | ||||||||||||| |||||||||||| |||
Sbjct: 522 ttccagtgaaggtggagggttatcgaggagcttggtttcttgccgaagttgttgagctaa 581
Query: 533 gggtacaagggaagttc 549
||||||||| ||||||
Sbjct: 582 aggtacaaggaaagttc 598
Score = 103 bits (52), Expect = 2e-21
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 147 cgagcaaggcaccaatccccgggtagaattcgtgagcattgacaatctccggccacgccc 206
|||||||| |||||||||| | | ||| ||||||||||||||| |||||||||||||
Sbjct: 207 cgagcaagacaccaatcccaagacacaatccgtgagcattgacaaggtccggccacgccc 266
Query: 207 tccgctgaagccccaccatgacttcaagtccggcgacaaggtggacacctac 258
||||| | || ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 267 tccgccggagacccaccatgacttcaagatcggcgacaaggtggacgcctac 318
Score = 67.9 bits (34), Expect = 1e-10
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 905 tagcttctcagggcagcagctgtagctctgatgaggagtacgga-tttgctcaaattt 961
||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||
Sbjct: 930 tagcttctcagggcagcagctatagctctgatgattagtaaggattttgctcaaattt 987
Score = 60.0 bits (30), Expect = 3e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 689 ttgatacttggcatattggtgattgtgatgctaaatataaactaggtgatagagttgatg 748
||||| ||||| | ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 714 ttgatgcttggaaaattggtgatcctgatgctaaatataaactactggatagagttgatg 773
Query: 749 ct 750
||
Sbjct: 774 ct 775