Miyakogusa Predicted Gene
- Lj6g3v2204780.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2204780.1 tr|G7IPK2|G7IPK2_MEDTR Splicing factor 3B subunit
OS=Medicago truncatula GN=MTR_2g009110 PE=4 SV=1,92.95,0,no
description,Armadillo-like helical; ARM repeat,Armadillo-type fold;
SPLICING FACTOR 3B, SUBUNIT 1,CUFF.60807.1
(3564 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|CN825676 homologue to UniRef100_A7PTH6 Cluster: Chromos... 1283 0.0
gnl|LJGI|BW600576 homologue to UniRef100_A7PTH6 Cluster: Chromos... 801 0.0
>gnl|LJGI|CN825676 homologue to UniRef100_A7PTH6 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 698
Score = 1283 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Plus
Query: 2918 cacaagatgtcctggcaactctattgaacaatctaaaggtgcaggagaggcagaaccgtg 2977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cacaagatgtcctggcaactctattgaacaatctaaaggtgcaggagaggcagaaccgtg 61
Query: 2978 tctgcacaactgtggcaattgcaatagttgcggaaacatgttcacccttcacagttttgc 3037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tctgcacaactgtggcaattgcaatagttgcggaaacatgttcacccttcacagttttgc 121
Query: 3038 cagcattgatgaatgagtatcgtgtgccagagcttaatgtgcaaaacggtgttctcaaat 3097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cagcattgatgaatgagtatcgtgtgccagagcttaatgtgcaaaacggtgttctcaaat 181
Query: 3098 ccctgtctttcctctttgagtacattggtgaaatgggtaaggactacatctatgcggtga 3157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccctgtctttcctctttgagtacattggtgaaatgggtaaggactacatctatgcggtga 241
Query: 3158 ctcctctgcttgaggatgctcttatggacagggacttggttcataggcagacagctgctt 3217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcctctgcttgaggatgctcttatggacagggacttggttcataggcagacagctgctt 301
Query: 3218 ctgccgtgaagcacatggcactgggagtggctggtttgggttgtgaagacgcgctggtcc 3277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgccgtgaagcacatggcactgggagtggctggtttgggttgtgaagacgcgctggtcc 361
Query: 3278 atttgctgaactatgtctggccaaacatttttgaaacttctccacatgtgatcaatgctg 3337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atttgctgaactatgtctggccaaacatttttgaaacttctccacatgtgatcaatgctg 421
Query: 3338 tgatggaagcaattgaagggatgagggtagctttgggtgctgctgttgttcttaattact 3397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgatggaagcaattgaagggatgagggtagctttgggtgctgctgttgttcttaattact 481
Query: 3398 gtctccaagggctgttccaccctgctagaaaagtgagggaggtgtactggaagatctata 3457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtctccaagggctgttccaccctgctagaaaagtgagggaggtgtactggaagatctata 541
Query: 3458 actcactctatattggagctcaggatgctcttgtagcagcataccctgccttggaggatg 3517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 actcactctatattggagctcaggatgctcttgtagcagcataccctgccttggaggatg 601
Query: 3518 agcacagcaacgtatacagtagaccagagttgatgatgttcatctag 3564
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agcacagcaacgtatacagtagaccagagttgatgatgttcatctag 648
>gnl|LJGI|BW600576 homologue to UniRef100_A7PTH6 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 411
Score = 801 bits (404), Expect = 0.0
Identities = 407/408 (99%)
Strand = Plus / Plus
Query: 2280 cttgggatcatctgatatagatgcacggttggaagagcttttgatagatggtattctcta 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cttgggatcatctgatatagatgcacggttggaagagcttttgatagatggtattctcta 63
Query: 2340 tgccttccaagagcagaccagtgatgatgctaatgtgatgctcaatggatttggtgcagt 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgccttccaagagcagaccagtgatgatgctaatgtgatgctcaatggatttggtgcagt 123
Query: 2400 agtgaactcgcttggccagagagtgaaaccatatcttccacagatttgtggtaccatcaa 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agtgaactcgcttggccagagagtgaaaccatatcttccacagatttgtggtaccatcaa 183
Query: 2460 gtggcggttaaacaacaagagtgcaaaggtgagacagcaagctgcggacctcatctcaag 2519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtggcggttaaacaacaagagtgcaaaggtgagacagcaagctgcggacctcatctcaag 243
Query: 2520 gattgctgttgtcatgaagcagtgccatgaggaacagctgatgggtcatcttggtgttgt 2579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gattgctgttgtcatgaagcagtgccatgaggaacagctgatgggtcatcttggtgttgt 303
Query: 2580 cttgtacgagtatttaggagaagagtatcctgaagttttagggtcaattctgggagctct 2639
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cttgtatgagtatttaggagaagagtatcctgaagttttagggtcaattctgggagctct 363
Query: 2640 caaatcaattgtcaatgttattggtatgacgaagatgactccgcctat 2687
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaatcaattgtcaatgttattggtatgacgaagatgactccgcctat 411