Miyakogusa Predicted Gene
- Lj6g3v2193660.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2193660.1 Non Chatacterized Hit- tr|F6HLD3|F6HLD3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.02,4.2039e-45,Pseudouridine synthase,Pseudouridine synthase,
catalytic domain; DKCLD,Dyskerin-like; CENTROMERE/MIC,CUFF.60886.1
(1743 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72975 homologue to UniRef100_A7PNL4 Cluster: Chromoso... 1532 0.0
gnl|LJGI|TC75069 458 e-128
gnl|LJGI|TC67614 similar to UniRef100_A7PNL4 Cluster: Chromosome... 192 5e-48
>gnl|LJGI|TC72975 homologue to UniRef100_A7PNL4 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 867
Score = 1532 bits (773), Expect = 0.0
Identities = 776/777 (99%)
Strand = Plus / Plus
Query: 1 atgtctctctccgagaccaagaagaagaagcaccgcagcgccaccaaaacccacgacgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atgtctctctccgagaccaagaagaagaagcaccgcagcgccaccaaaacccacgacgga 150
Query: 61 gccgccaccaccgaagatgaccaccacaccaaagacgaaccacagttcatgatcaaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gccgccaccaccgaagatgaccaccacaccaaagacgaaccacagttcatgatcaaaccc 210
Query: 121 gagaagctcacacccaccatcgacacctcccagtggcccatcctcctcaaaaactacgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gagaagctcacacccaccatcgacacctcccagtggcccatcctcctcaaaaactacgac 270
Query: 181 cgcctcaacgtccgcaccggccactacacccctctcccctccggctactcccctctcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cgcctcaacgtccgcaccggccactacacccctctcccctccggctactcccctctcaaa 330
Query: 241 cgccccctcccggagtatctcaaatacggcgtcctcaacctcgacaagcctgctaaccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cgccccctcccggagtatctcaaatacggcgtcctcaacctcgacaagcctgctaaccct 390
Query: 301 tcctcccatgaggtcgtcgcctggatcaaacgcctcctccgcgtcgagaaaaccggccac 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 391 tcctcccatgaggtcgtcgcctggatcaaacgcctactccgcgtcgagaaaaccggccac 450
Query: 361 agcggcactcttgaccccaaggtcaccgggaatctcattgtctgcattgacagggccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agcggcactcttgaccccaaggtcaccgggaatctcattgtctgcattgacagggccacc 510
Query: 421 cgccttgtgaagtcgcagcagggtgctgggaaggagtatgtctgcattgcccgacttcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cgccttgtgaagtcgcagcagggtgctgggaaggagtatgtctgcattgcccgacttcac 570
Query: 481 tctgatgttcctgatgtttccaaggttgctcgcgccctcgagacgctcaccggtgctgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctgatgttcctgatgtttccaaggttgctcgcgccctcgagacgctcaccggtgctgtg 630
Query: 541 tttcaacgcccgccgttgatctctgctgtcaagcgccagctcaggatcaggaccatttat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tttcaacgcccgccgttgatctctgctgtcaagcgccagctcaggatcaggaccatttat 690
Query: 601 gagagtaagcttcttgagtatgaccctgataggcatttggttgttttttggatttcatgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gagagtaagcttcttgagtatgaccctgataggcatttggttgttttttggatttcatgt 750
Query: 661 gaggctggtacctatgttaggaccatgtgtgttcatttgggtttggttcttggcgttggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaggctggtacctatgttaggaccatgtgtgttcatttgggtttggttcttggcgttggt 810
Query: 721 gctcatatgcaagagcttaggagggttaggtctgggatcatgggtgagaaggataac 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gctcatatgcaagagcttaggagggttaggtctgggatcatgggtgagaaggataac 867
>gnl|LJGI|TC75069
Length = 687
Score = 458 bits (231), Expect = e-128
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 1250 ttttgcctgctggtggggatagcatgattgccggtttggctgctgctgctcctgaagctg 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttttgcctgctggtggggatagcatgattgccggtttggctgctgctgctcctgaagctg 628
Query: 1310 atgaggcgaagaaaggcattgctgtagaagagggtaagaaggatggagatggggaagggc 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atgaggcgaagaaaggcattgctgtagaagagggtaagaaggatggagatggggaagggc 568
Query: 1370 gtaagaggaagaaacatgaaagcactgatagccctgcttctgttccggctaagaaagtga 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtaagaggaagaaacatgaaagcactgatagccctgcttctgttccggctaagaaagtga 508
Query: 1430 aagttgatgtggttgtagacgaagggaaagtaaaggtggaggttgagggtg 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagttgatgtggttgtagacgaagggaaagtaaaggtggaggttgagggtg 457
Score = 192 bits (97), Expect = 5e-48
Identities = 100/101 (99%)
Strand = Plus / Minus
Query: 1524 tggtgaagtggcatcttcagatgaggagaaagctgaaaaggagaagaaaaagaagcacaa 1583
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 413 tggtgaagtggcatcttcagatgaggagaaagctggaaaggagaagaaaaagaagcacaa 354
Query: 1584 ggtaaaggttgaagatggttcaccagatttagacaagtctg 1624
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggtaaaggttgaagatggttcaccagatttagacaagtctg 313
Score = 174 bits (88), Expect = 1e-42
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1656 tgctgaggataatgctgctgaaattagtaacggaaaggaggacagtaagagcgaaaagaa 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgctgaggataatgctgctgaaattagtaacggaaaggaggacagtaagagcgaaaagaa 222
Query: 1716 gcataagaaaaagaaaaacaaggacgca 1743
||||||||||||||||||||||||||||
Sbjct: 221 gcataagaaaaagaaaaacaaggacgca 194
>gnl|LJGI|TC67614 similar to UniRef100_A7PNL4 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 672
Score = 192 bits (97), Expect = 5e-48
Identities = 100/101 (99%)
Strand = Plus / Plus
Query: 1524 tggtgaagtggcatcttcagatgaggagaaagctgaaaaggagaagaaaaagaagcacaa 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tggtgaagtggcatcttcagatgaggagaaagctgaaaaggagaagaaaaagaagcacaa 187
Query: 1584 ggtaaaggttgaagatggttcaccagatttagacaagtctg 1624
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 188 ggtaaaggttgaagatggttcaccagatttagaccagtctg 228
Score = 163 bits (82), Expect = 5e-39
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1399 agccctgcttctgttccggctaagaaagtgaaagttgatgtggttgtagacgaagggaaa 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 agccctgcttctgttccggctaagaaagtgaaagttgatgtggttgtagacgaagggaaa 62
Query: 1459 gtaaaggtggaggttgagggtg 1480
||||||||||||||||||||||
Sbjct: 63 gtaaaggtggaggttgagggtg 84
Score = 159 bits (80), Expect = 7e-38
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1656 tgctgaggataatgctgctgaaattagtaacggaaaggaggacagtaagagcgaaaagaa 1715
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 tgctgaggataatgctgctgaaattagtaacggaaaggaggaccgtaagagcgaaaagaa 319
Query: 1716 gcataagaaaaagaaaaacaaggacgca 1743
||||||||||||||||||| ||||||||
Sbjct: 320 gcataagaaaaagaaaaaccaggacgca 347