Miyakogusa Predicted Gene
- Lj6g3v2192090.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2192090.1 Non Chatacterized Hit- tr|I1NZ13|I1NZ13_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,57.5,7e-16,coiled-coil,NULL; Bromodomain,Bromodomain;
BROMODOMAIN_2,Bromodomain; bromo domain,Bromodomain; BROM,CUFF.60754.1
(1644 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75935 similar to UniRef100_A1XX44 Cluster: Chloroplas... 1740 0.0
gnl|LJGI|TC66067 similar to UniRef100_A7QS98 Cluster: Chromosome... 900 0.0
gnl|LJGI|AU089074 similar to UniRef100_A1XX44 Cluster: Chloropla... 484 e-136
gnl|LJGI|TC82664 similar to UniRef100_Q5K541 Cluster: Bromodomai... 190 2e-47
gnl|LJGI|CB827951 similar to UniRef100_A7QS98 Cluster: Chromosom... 172 4e-42
gnl|LJGI|FS360325 similar to UniRef100_A7QS98 Cluster: Chromosom... 117 2e-25
gnl|LJGI|TC62837 similar to UniRef100_A7QS98 Cluster: Chromosome... 72 1e-11
>gnl|LJGI|TC75935 similar to UniRef100_A1XX44 Cluster: Chloroplast
bromodomain-containing protein; n=1; Pachysandra
terminalis|Rep: Chloroplast bromodomain-containing
protein - Pachysandra terminalis, partial (36%)
Length = 1253
Score = 1740 bits (878), Expect = 0.0
Identities = 878/878 (100%)
Strand = Plus / Plus
Query: 767 aggattgtttgaggcaggagcgcgattttgacgaggaattgcaggcgagttcatggaacc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aggattgtttgaggcaggagcgcgattttgacgaggaattgcaggcgagttcatggaacc 61
Query: 827 acattgagccggagagggagagggagagggtaaagaagaaggagaagccggtgaaggcgg 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acattgagccggagagggagagggagagggtaaagaagaaggagaagccggtgaaggcgg 121
Query: 887 tgatccctcctcctgtgaaattgcagcaagagcctgttccgcagccgccacctatgcagc 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgatccctcctcctgtgaaattgcagcaagagcctgttccgcagccgccacctatgcagc 181
Query: 947 agcagcagccgcctgcaagttcttcaaaccctccgttagtgcagtctccagtgcgcacac 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agcagcagccgcctgcaagttcttcaaaccctccgttagtgcagtctccagtgcgcacac 241
Query: 1007 cttcaccaatgcgagctcctccagtgaagcatgtgaagcaaccgaaaccgaaggccaagg 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttcaccaatgcgagctcctccagtgaagcatgtgaagcaaccgaaaccgaaggccaagg 301
Query: 1067 atccgaataagagggacatgaatcttgaggagaagcacaagctggggcttgggttgcaga 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atccgaataagagggacatgaatcttgaggagaagcacaagctggggcttgggttgcaga 361
Query: 1127 gtttaccatcagagaaaatggagcaggtggtgcagattataaagaagaggaatgggcatt 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtttaccatcagagaaaatggagcaggtggtgcagattataaagaagaggaatgggcatt 421
Query: 1187 tgaagcaagatggggatgagattgagctggatattgaggctgttgacaatgagacccttt 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgaagcaagatggggatgagattgagctggatattgaggctgttgacaatgagacccttt 481
Query: 1247 gggagcttgatcgattggtgacaaattggaagaagatgatgagcaagattaagcggcagg 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gggagcttgatcgattggtgacaaattggaagaagatgatgagcaagattaagcggcagg 541
Query: 1307 cactgttagacaatctgaatcccaatgtagcatcaaacaaagacaatggggaattgcccg 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cactgttagacaatctgaatcccaatgtagcatcaaacaaagacaatggggaattgcccg 601
Query: 1367 cttgcgataaagttgaaccagcaccagttgaggtggtgaaaaagccaaagaaagtggaag 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cttgcgataaagttgaaccagcaccagttgaggtggtgaaaaagccaaagaaagtggaag 661
Query: 1427 cagcaggggatgaggatgtagacattggcgacgagatgccaatgagtgagtttcccccag 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cagcaggggatgaggatgtagacattggcgacgagatgccaatgagtgagtttcccccag 721
Query: 1487 tagagattgagaaagacaaagatgtcgctgcaggccacgcgagtagtagttctggtagct 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tagagattgagaaagacaaagatgtcgctgcaggccacgcgagtagtagttctggtagct 781
Query: 1547 cgagcagttcaagcagtggttcctcgtcatctagtgattcggattcggggagttcctcag 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 cgagcagttcaagcagtggttcctcgtcatctagtgattcggattcggggagttcctcag 841
Query: 1607 ggagtgattctgaagcagacaacggacaatcatagcag 1644
||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggagtgattctgaagcagacaacggacaatcatagcag 879
>gnl|LJGI|TC66067 similar to UniRef100_A7QS98 Cluster: Chromosome chr3 scaffold_157,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_157, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 695
Score = 900 bits (454), Expect = 0.0
Identities = 454/454 (100%)
Strand = Plus / Plus
Query: 1 atggcttccgccgtcatagccaaccggaacgaacccaattggccacagcatagaggcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atggcttccgccgtcatagccaaccggaacgaacccaattggccacagcatagaggcggt 301
Query: 61 ggagcgggattcatgggaaaactaccattctctaaccctaaccctaaaattgggaacggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggagcgggattcatgggaaaactaccattctctaaccctaaccctaaaattgggaacggg 361
Query: 121 aagaggacgactcaatcggcgtccgatgatgcttcctccatcaaccggcgaccggcgtcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aagaggacgactcaatcggcgtccgatgatgcttcctccatcaaccggcgaccggcgtcg 421
Query: 181 acgaacgacaacatcttcaatctcaatcacaatcacaatcactcccaatacgtgacgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acgaacgacaacatcttcaatctcaatcacaatcacaatcactcccaatacgtgacgttc 481
Query: 241 aacttggcgtcgtacacgaagaaggagctccacgacctcaaaattcgcctccgatcggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aacttggcgtcgtacacgaagaaggagctccacgacctcaaaattcgcctccgatcggag 541
Query: 301 ctcgaacaggttcggaggctcaagagcagaatcgagtccggggagtttcagctgccgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctcgaacaggttcggaggctcaagagcagaatcgagtccggggagtttcagctgccgaag 601
Query: 361 aaatcggcggggagcaagaaggtttccggcaacaagcgtcccttgccggtgaaggatttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaatcggcggggagcaagaaggtttccggcaacaagcgtcccttgccggtgaaggatttc 661
Query: 421 aaacgatcgcatttggaggttgcgagcttgatga 454
||||||||||||||||||||||||||||||||||
Sbjct: 662 aaacgatcgcatttggaggttgcgagcttgatga 695
>gnl|LJGI|AU089074 similar to UniRef100_A1XX44 Cluster: Chloroplast
bromodomain-containing protein; n=1; Pachysandra
terminalis|Rep: Chloroplast bromodomain-containing
protein - Pachysandra terminalis, partial (19%)
Length = 244
Score = 484 bits (244), Expect = e-136
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 457 agctgcgtgcaggttttgcagaagcttatgaagcacaagcatgggtggatcttcaatgtt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctgcgtgcaggttttgcagaagcttatgaagcacaagcatgggtggatcttcaatgtt 60
Query: 517 cccgttgatgctgttggaatgggtcttcatgattactacgagatcatcaagaaacccatg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccgttgatgctgttggaatgggtcttcatgattactacgagatcatcaagaaacccatg 120
Query: 577 gatctgggtacggtgaaagcgaatctctcgaagaacgtgtacgctacgcctgaggaattt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatctgggtacggtgaaagcgaatctctcgaagaacgtgtacgctacgcctgaggaattt 180
Query: 637 gcatcggatgtgagattgacgttcaacaatgcactgacttataaccctaagggccacgat 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcatcggatgtgagattgacgttcaacaatgcactgacttataaccctaagggccacgat 240
Query: 697 gtgt 700
||||
Sbjct: 241 gtgt 244
>gnl|LJGI|TC82664 similar to UniRef100_Q5K541 Cluster: Bromodomain-containing
RNA-binding protein 2; n=1; Nicotiana tabacum|Rep:
Bromodomain-containing RNA-binding protein 2 - Nicotiana
tabacum (Common tobacco), partial (26%)
Length = 1128
Score = 190 bits (96), Expect = 2e-47
Identities = 165/188 (87%)
Strand = Plus / Plus
Query: 1119 gttgcagagtttaccatcagagaaaatggagcaggtggtgcagattataaagaagaggaa 1178
|||||||||||| ||||| |||||| |||||||||| |||||||| |||| || ||| ||
Sbjct: 432 gttgcagagtttgccatccgagaaattggagcaggtagtgcagatcataaggaggagaaa 491
Query: 1179 tgggcatttgaagcaagatggggatgagattgagctggatattgaggctgttgacaatga 1238
|||| |||||||||| ||||||||||| || ||||| |||||||| |||||||| | ||
Sbjct: 492 tgggaatttgaagcaggatggggatgaaatcgagcttgatattgaagctgttgatacaga 551
Query: 1239 gaccctttgggagcttgatcgattggtgacaaattggaagaagatgatgagcaagattaa 1298
||||||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||
Sbjct: 552 gaccctttgggagcttgatcgttttgtgaccaattggagaaagatggtgagcaagattaa 611
Query: 1299 gcggcagg 1306
||||||||
Sbjct: 612 gcggcagg 619
Score = 113 bits (57), Expect = 4e-24
Identities = 155/187 (82%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 1436 atgaggatgtagacattggcgacgagatgccaatgagtgagtttcccccagtagagattg 1495
|||| ||||| |||||||| || ||||||||||||| | || || || || |||||||
Sbjct: 824 atgaagatgttgacattggggatgagatgccaatgaacaacttcccacctgtggagattg 883
Query: 1496 agaaagacaaagatgtcgctgcaggccacgcgagtagtagttctggtagctcgagcagtt 1555
||||||| ||||||||||| | |||||| ||||||||| ||| ||||||| ||||||
Sbjct: 884 agaaagataaagatgtcgccggaggccatgcgagtagt---tctagtagctctggcagtt 940
Query: 1556 caagcagtggttcctcgtcatctagtgattcggattcggggagttcctcagggagtgatt 1615
| |||||| |||||| ||||| ||||||||||| || || || || |||||||||||||
Sbjct: 941 ctggcagtgattcctcatcatcaagtgattcggactctggtagctcatcagggagtgatt 1000
Query: 1616 ctgaagc 1622
|||||||
Sbjct: 1001 ctgaagc 1007
Score = 65.9 bits (33), Expect = 7e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1423 gaagcagcaggggatgaggatgtagacattggcgacgagatgccaatga 1471
|||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 772 gaagcagctggggatgaagatgttgacattggagacgagatgccaatga 820
>gnl|LJGI|CB827951 similar to UniRef100_A7QS98 Cluster: Chromosome chr3 scaffold_157,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_157, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 363
Score = 172 bits (87), Expect = 4e-42
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 1545 ctcgagcagttcaagcagtggttcctcgtcatctagtgattcggattcggggagttcctc 1604
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 174 ctcgagcagttcaagcagtggttcctcgtcatctagagattcggattcggcgagttcctc 233
Query: 1605 agggagtgattctgaagcagacaacggacaatcatagca 1643
||||||||||||||||||| |||||||||||||||||||
Sbjct: 234 agggagtgattctgaagcacacaacggacaatcatagca 272
>gnl|LJGI|FS360325 similar to UniRef100_A7QS98 Cluster: Chromosome chr3 scaffold_157,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_157, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 557
Score = 117 bits (59), Expect = 2e-25
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 1582 gattcggattcggggagttcctcagggagtgattctgaagcagacaacggacaatcatag 1641
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 462 gattcggattcggggagttcctcagggagtgattttgaagcagacaacggacaatcatag 403
Query: 1642 cag 1644
|||
Sbjct: 402 cag 400
>gnl|LJGI|TC62837 similar to UniRef100_A7QS98 Cluster: Chromosome chr3 scaffold_157,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_157, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 754
Score = 71.9 bits (36), Expect = 1e-11
Identities = 99/120 (82%)
Strand = Plus / Plus
Query: 372 gagcaagaaggtttccggcaacaagcgtcccttgccggtgaaggatttcaaacgatcgca 431
||||||||||||| |||||| |||||| || || |||| ||||||||| || || |||||
Sbjct: 626 gagcaagaaggttgccggcaccaagcggccgtttccggcgaaggatttgaagcggtcgca 685
Query: 432 tttggaggttgcgagcttgatgaagagctgcgtgcaggttttgcagaagcttatgaagca 491
| |||||||| || | |||||||| | || | |||||| |||||||||| ||||||||
Sbjct: 686 gtcggaggttgggaacatgatgaagggttgtggccaggttctgcagaagctgatgaagca 745