Miyakogusa Predicted Gene
- Lj6g3v2192080.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2192080.1 Non Chatacterized Hit- tr|I1M2K6|I1M2K6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19244
PE,80.3,0,seg,NULL; PREDICTED: HYPOTHETICAL PROTEIN, PARTIAL,NULL; DNA
POLYMERASE V RELATED,DNA polymerase V; ,CUFF.60755.1
(3783 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72445 similar to UniRef100_A2Q1A6 Cluster: DNA polyme... 1183 0.0
gnl|LJGI|TC78734 similar to UniRef100_A2Q1A6 Cluster: DNA polyme... 892 0.0
gnl|LJGI|BP052781 similar to UniRef100_A2Q1A6 Cluster: DNA polym... 815 0.0
gnl|LJGI|AV779055 UniRef100_A0HC27 Cluster: Transcriptional regu... 119 1e-25
>gnl|LJGI|TC72445 similar to UniRef100_A2Q1A6 Cluster: DNA polymerase V; n=1; Medicago
truncatula|Rep: DNA polymerase V - Medicago truncatula
(Barrel medic), partial (15%)
Length = 1053
Score = 1183 bits (597), Expect = 0.0
Identities = 611/618 (98%)
Strand = Plus / Plus
Query: 3166 gtgaacctaaagaaaaagcaatcagctgtcagacagaaaatggtttcttcccttgcccag 3225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgaacctaaagaaaaagcaatcagctgtcagacagaaaatggtttcttcccttgcccag 61
Query: 3226 caatcaaccttctggattttgaaaattattgattcaggaaatttctcagagtctgaactt 3285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 caatcaaccttctggattttgaaaattattgattcaggaaatttctcagagtctgaactt 121
Query: 3286 ggtaggattgttcaaattttccgggcagcattgacgggttattttgacaataagaagtct 3345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggtaggattgttcaaattttccgggcagcattgacgggttattttgacaataagaagtct 181
Query: 3346 caaatcaaggctggatttttaaaggaaatttttcgaagacgcccatggattggacatgct 3405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 caaatcaaggctggatttttaaaggaaatttttcgaagacgcccatggattggacatgct 241
Query: 3406 gtccttggctctatactgcagaaatgtggaaatgccaagtcagactttcgccgagtggaa 3465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtccttggctctatactgcagaaatgtggaaatgccaagtcagactttcgccgagtggaa 301
Query: 3466 gcacttgatctagttttggaaatattgaagtcaacaggtggtaatgatcagagtgcatca 3525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcacttgatctagttttggaaatattgaagtcaacaggtggtaatgatcagagtgcatca 361
Query: 3526 agaaagattgttaaatccaatttggataaactctcttttctaatgaaagagttggtgaca 3585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agaaagattgttaaatccaatttggataaactctcttttctaatgaaagagttggtgaca 421
Query: 3586 aatatgccgagcaaatcagcaagacgttcagaggtaaacaagttctgtgtcaagtgcttt 3645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aatatgccgagcaaatcagcaagacgttcagaggtaaacaagttctgtgtcaagtgcttt 481
Query: 3646 gagatcttgtctaagcttaaccttaccaagccactggttaaagctttgccacctgatgct 3705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gagatcttgtctaagcttaaccttaccaagccactggttaaagctttgccacctgatgct 541
Query: 3706 caagccgcccttgaggctcaacttggtgacaaatttactagattgaagaagctagacnnn 3765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caagccgcccttgaggctcaacttggtgacaaatttactagattgaagaagctagacaaa 601
Query: 3766 nnnncagtggaaacatga 3783
||||||||||||||
Sbjct: 602 aaaacagtggaaacatga 619
>gnl|LJGI|TC78734 similar to UniRef100_A2Q1A6 Cluster: DNA polymerase V; n=1;
Medicago truncatula|Rep: DNA polymerase V - Medicago
truncatula (Barrel medic), partial (8%)
Length = 550
Score = 892 bits (450), Expect = 0.0
Identities = 488/504 (96%), Gaps = 15/504 (2%)
Strand = Plus / Plus
Query: 1 atggccagcaaaaaacggaactcagttccggaggaagaaaatgccaccgattctcccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atggccagcaaaaaacggaactcagttccggaggaagaaaatgccaccgattctcccaaa 121
Query: 61 cctctcaacaaaaaatccaaaaacatcgatgctgtggcgctaccatcctccacaaagcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cctctcaacaaaaaatccaaaaacatcgatgctgtggcgctaccatcctccacaaagcc- 180
Query: 121 atggagtccaagaagaaacgaaaagcattagacaaggagcgccgccgcgccacggccgga 180
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 --------------gaaacgaaaagcattagacaaggagcgccgccgcgccacggccgga 226
Query: 181 gaagtagtcccggagccgaaacctgtggcggcggcggattcgcccagcaccagcggcggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaagtagtcccggagccgaaacctgtggcggcggcggattcgcccagcaccagcggcggc 286
Query: 241 agcgcggctccggagtttcacattggagtgttcaaggacttggcggttgctaatgagacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agcgcggctccggagtttcacattggagtgttcaaggacttggcggttgctaatgagacg 346
Query: 301 atgagggaagctgctgcgaagcagatggtgagggagttgaaggaagttcagaatgcttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atgagggaagctgctgcgaagcagatggtgagggagttgaaggaagttcagaatgcttat 406
Query: 361 gatgggcttggtgagagtgagaaggaggagggtgatggtggattcaagctggaagcggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatgggcttggtgagagtgagaaggaggagggtgatggtggattcaagctggaagcggag 466
Query: 421 aaagatgatgggttggagaactgtgcagcctctgttagatacgctgttcgtcggcttatt 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaagatgattggttggagaactgtgcagcctctgttagatacgctgttcgtcggcttatt 526
Query: 481 cgcggtgtctcgtcgtcaagagag 504
||||||||||||||||||||||||
Sbjct: 527 cgcggtgtctcgtcgtcaagagag 550
>gnl|LJGI|BP052781 similar to UniRef100_A2Q1A6 Cluster: DNA polymerase V; n=1; Medicago
truncatula|Rep: DNA polymerase V - Medicago truncatula
(Barrel medic), partial (8%)
Length = 445
Score = 815 bits (411), Expect = 0.0
Identities = 440/446 (98%), Gaps = 3/446 (0%)
Strand = Plus / Minus
Query: 1411 ctgtataaaattgcacagcattttcttaaacagttgtca-gattgggttggggatgatga 1469
||||||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||||
Sbjct: 445 ctgtataaaattgcacaacattttcttaa-cagttgtcaagattggnttggggatgatga 387
Query: 1470 tgtccgaagagttgctgttatagttgcattacagaagcacagca-atggaaaatttgatc 1528
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 386 tgtccgaagagttgctgttatagttgcattacagaagcacagcanatggaaaatttgatc 327
Query: 1529 tcatcacacaaacaaaaatggttaaagatttaatgtcgcagttcaagacagaacctggtt 1588
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcagcacacaaacaaaaatggttaaagatttaatgtcgcagttcaagacagaacctggtt 267
Query: 1589 gcatgctttttattcagaacttaatgaatatttttgtggatgaaggtaatgccttggagg 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcatgctttttattcagaacttaatgaatatttttgtggatgaaggtaatgccttggagg 207
Query: 1649 aaccttcagaccagagtcaaacaacagatgaaaattctgaaataggttctgttgaggata 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aaccttcagaccagagtcaaacaacagatgaaaattctgaaataggttctgttgaggata 147
Query: 1709 aggattctcctatgagttctgactttttgaagagttggattatagaatcccttcctagta 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aggattctcctatgagttctgactttttgaagagttggattatagaatcccttcctagta 87
Query: 1769 ttttgaaatgcttgaagctggatcatgaagagaagttccgagtgcagaaagaaatcatga 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ttttgaaatgcttgaagctggatcatgaagagaagttccgagtgcagaaagaaatcatga 27
Query: 1829 aatttctggctgttcagggtctgttc 1854
||||||||||||||||||||||||||
Sbjct: 26 aatttctggctgttcagggtctgttc 1
>gnl|LJGI|AV779055 UniRef100_A0HC27 Cluster: Transcriptional regulator LacI family;
n=1; Comamonas testosteroni KF-1|Rep:, partial (3%)
Length = 690
Score = 119 bits (60), Expect = 1e-25
Identities = 125/138 (90%), Gaps = 9/138 (6%)
Strand = Plus / Plus
Query: 1875 agtgacttcgttcgagttacaggagaaattcag-atggccaa-aatctcccacatcaa-t 1931
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
Sbjct: 1 agtgacttcgttcgagtta-aggagaaattcaggatggccaacaatctcccacatcaact 59
Query: 1932 tgctctttgcaag-atgtgtattaaccaactgcagttattattggcaa--atgctcaaaa 1988
||||||| ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 60 tgctcttagcaaggatgtgtattaagcaactgcagttatgattggcaacaatgctcaaaa 119
Query: 1989 ggga--gaggggtcacgt 2004
||| ||||||||||||
Sbjct: 120 ggggaggaggggtcacgt 137