Miyakogusa Predicted Gene

Lj6g3v2168640.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v2168640.1 Non Chatacterized Hit- tr|F6HIM0|F6HIM0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,60.26,0,no
description,Helix-loop-helix domain; HLH,Helix-loop-helix domain;
coiled-coil,NULL; helix loop
he,NODE_85107_length_903_cov_18.770763.path1.1
         (669 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP060308 similar to UniRef100_A7P102 Cluster: Chromosom...   353   9e-97
gnl|LJGI|DC594013 similar to UniRef100_Q9XF70 Cluster: Thioredox...   303   7e-82
gnl|LJGI|TC60959 similar to UniRef100_A7P102 Cluster: Chromosome...    56   3e-07
gnl|LJGI|TC67303 similar to UniRef100_A7P102 Cluster: Chromosome...    52   5e-06
gnl|LJGI|TC65205 similar to UniRef100_A7P102 Cluster: Chromosome...    52   5e-06

>gnl|LJGI|BP060308 similar to UniRef100_A7P102 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (21%)
          Length = 354

 Score =  353 bits (178), Expect = 9e-97
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 488 aacctagcttcctaccccaccactccaccctcccaactgcatttcctgcccctcgacacg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aacctagcttcctaccccaccactccaccctcccaactgcatttcctgcccctcgacacg 295

                                                                       
Query: 548 ttgttggtagcaagctgatgcctattataggctatccaggagtttcaatgtggcaatttt 607
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgttggtagccagctgatgcctattataggctatccaggagtttcaatgtggcaatttt 235

                                                                       
Query: 608 taccatctgctgctgttgatacctctcaggatcatgtactccggcccccagttgcataag 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taccatctgctgctgttgatacctctcaggatcatgtactccggcccccagttgcataag 175

             
Query: 668 tt 669
           ||
Sbjct: 174 tt 173


>gnl|LJGI|DC594013 similar to UniRef100_Q9XF70 Cluster: Thioredoxin h; n=1; Hevea
           brasiliensis|Rep: Thioredoxin h - Hevea brasiliensis
           (Para rubber tree), partial (86%)
          Length = 593

 Score =  303 bits (153), Expect = 7e-82
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                       
Query: 95  gtgtggaactagatgacacctatggaaattcagatgctttcaaggaaagtggctcgagaa 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtggaactagatgacacctatggaaattcagatgctttcaaggaaagtggctcgagaa 500

                                                                       
Query: 155 aacgctcaaggtcaggatcctgcaacctatctggttccaaagcatgcagagagaaaatgc 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacgctcaaggtcaggatcctgcaacctatctggttccaaagcatgcagagagaaaatgc 560

                                            
Query: 215 gaagggatcagctaaatgacagatttttagaac 247
           |||||||||||||||||||||||||||||||||
Sbjct: 561 gaagggatcagctaaatgacagatttttagaac 593


>gnl|LJGI|TC60959 similar to UniRef100_A7P102 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (77%)
          Length = 764

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 581 atccaggagtttcaatgtggcaatttttaccatctgctgctgttgatacctc 632
           ||||||||||| | |||||||||||||| || |||||||| || ||||||||
Sbjct: 676 atccaggagttgccatgtggcaatttttgccgtctgctgccgtggatacctc 727


>gnl|LJGI|TC67303 similar to UniRef100_A7P102 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (47%)
          Length = 721

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 403 gagaaaaatgagcttcgtgatgagaagcag 432
           ||||| ||||||||||||||||||||||||
Sbjct: 642 gagaagaatgagcttcgtgatgagaagcag 671


>gnl|LJGI|TC65205 similar to UniRef100_A7P102 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (79%)
          Length = 1065

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 403 gagaaaaatgagcttcgtgatgagaagcag 432
           ||||| ||||||||||||||||||||||||
Sbjct: 579 gagaagaatgagcttcgtgatgagaagcag 608