Miyakogusa Predicted Gene
- Lj6g3v2055770.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2055770.1 tr|B9N763|B9N763_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_785648 PE=4
SV=1,47.79,7e-19,seg,NULL,CUFF.60616.1
(465 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77868 similar to UniRef100_A7PXE1 Cluster: Chromosome... 900 0.0
gnl|LJGI|TC72580 similar to UniRef100_A7PXE1 Cluster: Chromosome... 135 3e-31
gnl|LJGI|TC67786 similar to UniRef100_A7PXE1 Cluster: Chromosome... 135 3e-31
gnl|LJGI|BP056041 similar to UniRef100_A7PXE1 Cluster: Chromosom... 76 2e-13
>gnl|LJGI|TC77868 similar to UniRef100_A7PXE1 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 1109
Score = 900 bits (454), Expect = 0.0
Identities = 465/468 (99%), Gaps = 3/468 (0%)
Strand = Plus / Plus
Query: 1 atgggacaccataacaatggaggatcatggcctccaataggggccccactcaacgtgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atgggacaccataacaatggaggatcatggcctccaataggggccccactcaacgtgaga 407
Query: 61 gctgatcaacttcaacattggactagcaacttcgatagcacggttaatgctgtgtctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gctgatcaacttcaacattggactagcaacttcgatagcacggttaatgctgtgtctttt 467
Query: 121 ggcttcgttgccactgcaattctcatctccatgttcttagtcatggctatctttgagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggcttcgttgccactgcaattctcatctccatgttcttagtcatggctatctttgagagg 527
Query: 181 ttcctcagaccaccgc---cgccgccgtccggtcgccggagccgtcgtgccgttgagtct 237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttcctcagaccaccgccgccgccgccgtccggtcgccggagccgtcgtgccgttgagtct 587
Query: 238 caggtggctcttggtgggaagctcggtcactcatcacccaaaatgaatggatatggaagc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caggtggctcttggtgggaagctcggtcactcatcacccaaaatgaatggatatggaagc 647
Query: 298 tgggtttcagttttgatgcctggagaagagactccttcgttcattgctcatcctgctcct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgggtttcagttttgatgcctggagaagagactccttcgttcattgctcatcctgctcct 707
Query: 358 gcaccatgttcccctgaacggatttcatggccttcccatcatcagaataaaacattacct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gcaccatgttcccctgaacggatttcatggccttcccatcatcagaataaaacattacct 767
Query: 418 tgttctacttccaacattattccgcctaatatcgaccaagtatgatac 465
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgttctacttccaacattattccgcctaatatcgaccaagtatgatac 815
>gnl|LJGI|TC72580 similar to UniRef100_A7PXE1 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (68%)
Length = 679
Score = 135 bits (68), Expect = 3e-31
Identities = 256/316 (81%), Gaps = 12/316 (3%)
Strand = Plus / Plus
Query: 124 ttcgttgccactgcaattctcatctccatgttcttagtcatggctatctttgagaggttc 183
|||||||| ||||| |||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 32 ttcgttgctactgccattctcatctccatgttccttgtcatggcgatctttgagaggttt 91
Query: 184 ctcagacc-acc--gccgccg------ccgtccggtcgccggagccgtcgtgccgttgag 234
|| ||||| ||| ||||||| ||| |||||||||||||| ||| ||| |||
Sbjct: 92 cttagacccacctcgccgccgatgtcgccgcccggtcgccggagctccggtgacgtcgag 151
Query: 235 tctcaggtggctcttggtgggaagctcggtcactcatcacccaaaatgaatggatatgga 294
|||||| ||| | | ||||| ||||||||| || ||||||| ||||||| || |||||
Sbjct: 152 tctcagatgggtttcggtggaaagctcggttacccatcaccgaaaatgagtgtatatgac 211
Query: 295 agctgggtttcagttttgatgcctggagaagagactccttcgttcattgctcatcctgct 354
|| ||||||||||| ||||||||||||| | || ||| | |||||||| || ||||||
Sbjct: 212 agtggggtttcagttctgatgcctggagatgcgatacctacattcattgcacaccctgct 271
Query: 355 cctgcaccatgttcccctgaacggatttcatggccttcccatcatcagaataaaacatta 414
||||| || |||| || || |||| |||||||||||| ||||||| | || ||||||
Sbjct: 272 cctgccccgtgttgtcccgagcggaattcatggccttc---tcatcagcaaaatacatta 328
Query: 415 ccttgttctacttcca 430
|||||||| |||||||
Sbjct: 329 ccttgttcaacttcca 344
>gnl|LJGI|TC67786 similar to UniRef100_A7PXE1 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (73%)
Length = 828
Score = 135 bits (68), Expect = 3e-31
Identities = 256/316 (81%), Gaps = 12/316 (3%)
Strand = Plus / Plus
Query: 124 ttcgttgccactgcaattctcatctccatgttcttagtcatggctatctttgagaggttc 183
|||||||| ||||| |||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 321 ttcgttgctactgccattctcatctccatgttccttgtcatggcgatctttgagaggttt 380
Query: 184 ctcagacc-acc--gccgccg------ccgtccggtcgccggagccgtcgtgccgttgag 234
|| ||||| ||| ||||||| ||| |||||||||||||| ||| ||| |||
Sbjct: 381 cttagacccacctcgccgccgatgtcgccgcccggtcgccggagctccggtgacgtcgag 440
Query: 235 tctcaggtggctcttggtgggaagctcggtcactcatcacccaaaatgaatggatatgga 294
|||||| ||| | | ||||| ||||||||| || ||||||| ||||||| || |||||
Sbjct: 441 tctcagatgggtttcggtggaaagctcggttacccatcaccgaaaatgagtgtatatgac 500
Query: 295 agctgggtttcagttttgatgcctggagaagagactccttcgttcattgctcatcctgct 354
|| ||||||||||| ||||||||||||| | || ||| | |||||||| || ||||||
Sbjct: 501 agtggggtttcagttctgatgcctggagatgcgatacctacattcattgcacaccctgct 560
Query: 355 cctgcaccatgttcccctgaacggatttcatggccttcccatcatcagaataaaacatta 414
||||| || |||| || || |||| |||||||||||| ||||||| | || ||||||
Sbjct: 561 cctgccccgtgttgtcccgagcggaattcatggccttc---tcatcagcaaaatacatta 617
Query: 415 ccttgttctacttcca 430
|||||||| |||||||
Sbjct: 618 ccttgttcaacttcca 633
>gnl|LJGI|BP056041 similar to UniRef100_A7PXE1 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (27%)
Length = 481
Score = 75.8 bits (38), Expect = 2e-13
Identities = 109/132 (82%), Gaps = 3/132 (2%)
Strand = Plus / Minus
Query: 299 gggtttcagttttgatgcctggagaagagactccttcgttcattgctcatcctgctcctg 358
||||||||||| ||||||||||||| | || ||| | |||||||| || ||||||||||
Sbjct: 312 gggtttcagttctgatgcctggagatgcgatacctacattcattgcacaccctgctcctg 253
Query: 359 caccatgttcccctgaacggatttcatggccttcccatcatcagaataaaacattacctt 418
| || |||| || || |||| |||||||||||| ||||||| | || ||||||||||
Sbjct: 252 ccccgtgttgtcccgagcggaattcatggccttc---tcatcagcaaaatacattacctt 196
Query: 419 gttctacttcca 430
|||| |||||||
Sbjct: 195 gttcaacttcca 184