Miyakogusa Predicted Gene
- Lj6g3v2043290.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2043290.1 Non Chatacterized Hit- tr|I3T7G4|I3T7G4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.42,0,RRM_1,RNA
recognition motif domain; RRM_6,NULL; RRM_5,NULL; RNA-binding domain,
RBD,NULL; no descrip,CUFF.60643.1
(1551 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73316 similar to UniRef100_A7QYN5 Cluster: Chromosome... 1332 0.0
gnl|LJGI|TC67564 similar to UniRef100_A2Q4R3 Cluster: RNA-bindin... 995 0.0
gnl|LJGI|FS329433 similar to UniRef100_A2Q4R3 Cluster: RNA-bindi... 791 0.0
gnl|LJGI|FS355729 similar to UniRef100_A9TN58 Cluster: Predicted... 785 0.0
gnl|LJGI|DC592917 similar to UniRef100_Q9ZR39 Cluster: U2 snRNP ... 634 0.0
gnl|LJGI|TC79958 similar to UniRef100_A7PUY1 Cluster: Chromosome... 109 5e-23
gnl|LJGI|TC76613 similar to UniRef100_A7PUY1 Cluster: Chromosome... 74 3e-12
>gnl|LJGI|TC73316 similar to UniRef100_A7QYN5 Cluster: Chromosome undetermined
scaffold_252, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_252, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(94%)
Length = 874
Score = 1332 bits (672), Expect = 0.0
Identities = 675/676 (99%)
Strand = Plus / Plus
Query: 876 tggtggaactgacggacttgatcgcatctttgtgggtgggctgccatactactttgctga 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tggtggaactgacggacttgatcgcatctttgtgggtgggctgccatactactttgctga 112
Query: 936 agaacaaattagagaattgctccaagcttttggccctctccggtcttttgatctagttag 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 agaacaaattagagaattgctccaagcttttggccctctccggtcttttgatctagttag 172
Query: 996 ggataaagaaactggaaattctaaaggatatggtttctgcatctatcaggatccagcggt 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ggataaagaaactggaaattctaaaggatatggtttctgcatctatcaggatccagcggt 232
Query: 1056 aacagacatggcttgtgcctctctcaatggccttaaaatgggcgacaaaacattgactgt 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aacagacatggcttgtgcctctctcaatggccttaaaatgggcgacaaaacattgactgt 292
Query: 1116 aaggcgtgctactgtcagtggacattctaaaacagagcaggaacacatctttgcacaggc 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaggcgtgctactgtcagtggacattctaaaacagagcaggaacacatctttgcacaggc 352
Query: 1176 tcaacagaatataactatgcagaaagtagctttagaagtggtcgggttaaatatcccagg 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcaacagaatataactatgcagaaagtagctttagaagtggtcgggttaaatatcccagg 412
Query: 1236 agttgaaagagtgccaacaacaattgatgaaagcgccaccaaagttttatgtttgactga 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agttgaaagagtgccaacaacaattgatgaaagcgccaccaaagttttatgtttgactga 472
Query: 1296 ggccattacaactgatgaattgatggataatgaggagtatgaagaaatagtggaggacat 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggccattacaactgatgaattgatggataatgaggagtatgaagaaatagtggaggacat 532
Query: 1356 gcgggatgaatgcggcaaatttgggaccttgatgaatgttgttattcctcgtccaaatcc 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcgggatgaatgcggcaaatttgggaccttgatgaatgttgttattcctcgtccaaatcc 592
Query: 1416 cagtggagagcaaactcccggcattggaaaggttttcttggaatactctgatacagctgc 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cagtggagagcaaactcccggcattggaaaggttttcttggaatactctgatacagctgc 652
Query: 1476 ttctttcgcggccaaaagtgcgctgaatggtagaaaatttggtggcaatatggtgactgc 1535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttctttcgcggcccaaagtgcgctgaatggtagaaaatttggtggcaatatggtgactgc 712
Query: 1536 ttattattatccagaa 1551
||||||||||||||||
Sbjct: 713 ttattattatccagaa 728
>gnl|LJGI|TC67564 similar to UniRef100_A2Q4R3 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (42%)
Length = 679
Score = 995 bits (502), Expect = 0.0
Identities = 502/502 (100%)
Strand = Plus / Plus
Query: 1 atgtctgacgtcgaaaatcataccttccatcgtggttcttcaaaatcttcccccgataag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atgtctgacgtcgaaaatcataccttccatcgtggttcttcaaaatcttcccccgataag 237
Query: 61 tcaaattctcatggatctggtcgtgagagtacgaggatgaggaagcaagatggggagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcaaattctcatggatctggtcgtgagagtacgaggatgaggaagcaagatggggagagg 297
Query: 121 agagattttcatgaccgccatcacagagactacaaggatggagggttcaatggaagggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agagattttcatgaccgccatcacagagactacaaggatggagggttcaatggaagggac 357
Query: 181 agatataacagttataatcgtcaccgcagccgtgattatgataggcataatgaccgtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agatataacagttataatcgtcaccgcagccgtgattatgataggcataatgaccgtgtt 417
Query: 241 aaagatggtgagagaaggcacaaatatgaagcacattctaagagatcccggggagaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaagatggtgagagaaggcacaaatatgaagcacattctaagagatcccggggagaatct 477
Query: 301 agatcaccatccagatcgccttctcgttcagaaagcaaaaggatctctggctttgacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agatcaccatccagatcgccttctcgttcagaaagcaaaaggatctctggctttgacatg 537
Query: 361 gcacctccttctgcagatggcacatctgctgtttcaggtcaaacactgggtattaatcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcacctccttctgcagatggcacatctgctgtttcaggtcaaacactgggtattaatcat 597
Query: 421 ttaaatcaaggaactgcacaaaacttctcactgtttgggatatcgcagccccagatagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttaaatcaaggaactgcacaaaacttctcactgtttgggatatcgcagccccagatagga 657
Query: 481 gcactttccttaatgcaagttc 502
||||||||||||||||||||||
Sbjct: 658 gcactttccttaatgcaagttc 679
>gnl|LJGI|FS329433 similar to UniRef100_A2Q4R3 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (30%)
Length = 653
Score = 791 bits (399), Expect = 0.0
Identities = 399/399 (100%)
Strand = Plus / Plus
Query: 1 atgtctgacgtcgaaaatcataccttccatcgtggttcttcaaaatcttcccccgataag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 atgtctgacgtcgaaaatcataccttccatcgtggttcttcaaaatcttcccccgataag 148
Query: 61 tcaaattctcatggatctggtcgtgagagtacgaggatgaggaagcaagatggggagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tcaaattctcatggatctggtcgtgagagtacgaggatgaggaagcaagatggggagagg 208
Query: 121 agagattttcatgaccgccatcacagagactacaaggatggagggttcaatggaagggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agagattttcatgaccgccatcacagagactacaaggatggagggttcaatggaagggac 268
Query: 181 agatataacagttataatcgtcaccgcagccgtgattatgataggcataatgaccgtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agatataacagttataatcgtcaccgcagccgtgattatgataggcataatgaccgtgtt 328
Query: 241 aaagatggtgagagaaggcacaaatatgaagcacattctaagagatcccggggagaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaagatggtgagagaaggcacaaatatgaagcacattctaagagatcccggggagaatct 388
Query: 301 agatcaccatccagatcgccttctcgttcagaaagcaaaaggatctctggctttgacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agatcaccatccagatcgccttctcgttcagaaagcaaaaggatctctggctttgacatg 448
Query: 361 gcacctccttctgcagatggcacatctgctgtttcaggt 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcacctccttctgcagatggcacatctgctgtttcaggt 487
>gnl|LJGI|FS355729 similar to UniRef100_A9TN58 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(29%)
Length = 763
Score = 785 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Minus
Query: 573 tgagcagtcaattgcaacattcttcagccatgtcatgactgctattgggggaaattctgc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tgagcagtcaattgcaacattcttcagccatgtcatgactgctattgggggaaattctgc 704
Query: 633 tggagcaggtgattctgttgtcaatgtctacatcaatcatgagaagaaatttgcatttct 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tggagcaggtgattctgttgtcaatgtctacatcaatcatgagaagaaatttgcatttct 644
Query: 693 ggaaatgaggactgttgaagaagctagtaatgcaatgtcattagatgggatagtatttga 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggaaatgaggactgttgaagaagctagtaatgcaatgtcattagatgggatagtatttga 584
Query: 753 gggtgtttctgtgagggttcgtaggcctacagactataaccctacattagctgcagctct 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gggtgtttctgtgagggttcgtaggcctacagactataaccctacattagctgcagctct 524
Query: 813 aggtccttgccagccaagtccataccttaacttatctgccgttggattgtctggaggtac 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aggtccttgccagccaagtccataccttaacttatctgccgttggattgtctggaggtac 464
Query: 873 aattggtggaactgacggacttgatcgcatctttgtgggtgggctgccatactactttgc 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aattggtggaactgacggacttgatcgcatctttgtgggtgggctgccatactactttgc 404
Query: 933 tgaagaacaaattagagaattgctccaagcttttgg 968
||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgaagaacaaattagagaattgctccaagcttttgg 368
Score = 155 bits (78), Expect = 1e-36
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 968 gccctctccggtcttttgatctagttagggataaagaaactggaaattctaaaggatatg 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gccctctccggtcttttgatctagttagggataaagaaactggaaattctaaaggatatg 167
Query: 1028 gtttctgcatctatcagg 1045
||||||||||||||||||
Sbjct: 166 gtttctgcatctatcagg 149
>gnl|LJGI|DC592917 similar to UniRef100_Q9ZR39 Cluster: U2 snRNP auxiliary factor,
large subunit; n=1; Nicotiana plumbaginifolia|Rep: U2
snRNP auxiliary factor, large subunit - Nicotiana
plumbaginifolia (Leadwort-leaved tobacco), partial (10%)
Length = 563
Score = 634 bits (320), Expect = 0.0
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 59 agtcaaattctcatggatctggtcgtgagagtacgaggatgaggaagcaagatggggaga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agtcaaattctcatggatctggtcgtgagagtacgaggatgaggaagcaagatggggaga 303
Query: 119 ggagagattttcatgaccgccatcacagagactacaaggatggagggttcaatggaaggg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggagagattttcatgaccgccatcacagagactacaaggatggagggttcaatggaaggg 363
Query: 179 acagatataacagttataatcgtcaccgcagccgtgattatgataggcataatgaccgtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acagatataacagttataatcgtcaccgcagccgtgattatgataggcataatgaccgtg 423
Query: 239 ttaaagatggtgagagaaggcacaaatatgaagcacattctaagagatcccggggagaat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttaaagatggtgagagaaggcacaaatatgaagcacattctaagagatcccggggagaat 483
Query: 299 ctagatcaccatccagatcgccttctcgttcagaaagcaaaaggatctctggctttgaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctagatcaccatccagatcgccttctcgttcagaaagcaaaaggatctctggctttgaca 543
Query: 359 tggcacctccttctgcagat 378
||||||||||||||||||||
Sbjct: 544 tggcacctccttctgcagat 563
Score = 121 bits (61), Expect = 1e-26
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 atgtctgacgtcgaaaatcataccttccatcgtggttcttcaaaatcttcccccgataag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 atgtctgacgtcgaaaatcataccttccatcgtggttcttcaaaatcttcccccgataag 201
Query: 61 t 61
|
Sbjct: 202 t 202
>gnl|LJGI|TC79958 similar to UniRef100_A7PUY1 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 877
Score = 109 bits (55), Expect = 5e-23
Identities = 202/251 (80%)
Strand = Plus / Plus
Query: 493 atgcaagttcagcctatgacacagcaggctacaaggcacgcacggagagtgtacattggt 552
|||| ||||||| ||||||| || |||||||||||||| || || ||||||| ||||
Sbjct: 483 atgccagttcaggctatgactcaacaggctacaaggcatgctaggcgagtgtatgttggg 542
Query: 553 gggcttcctcctttgactaatgagcagtcaattgcaacattcttcagccatgtcatgact 612
|| ||||||||| | |||||||||||| ||||||| ||||| ||||| || ||| |
Sbjct: 543 ggccttcctcctacagccaatgagcagtcagttgcaactttctttagccaagttatggcc 602
Query: 613 gctattgggggaaattctgctggagcaggtgattctgttgtcaatgtctacatcaatcat 672
||||||||||| ||||||| |||||||| | || |||||||| ||||| || |||
Sbjct: 603 aagattgggggaaacactgctggtccaggtgatgcggtggtcaatgtttacattaaccat 662
Query: 673 gagaagaaatttgcatttctggaaatgaggactgttgaagaagctagtaatgcaatgtca 732
|| || || || || ||| |||| |||||| |||||||||||||||| ||||| ||| |
Sbjct: 663 gacaaaaagttcgcttttgtggagatgaggtctgttgaagaagctagcaatgctatggct 722
Query: 733 ttagatgggat 743
|||||||||||
Sbjct: 723 ttagatgggat 733
>gnl|LJGI|TC76613 similar to UniRef100_A7PUY1 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 451
Score = 73.8 bits (37), Expect = 3e-12
Identities = 139/173 (80%)
Strand = Plus / Plus
Query: 571 aatgagcagtcaattgcaacattcttcagccatgtcatgactgctattgggggaaattct 630
|||||||||||| ||||||| ||||| || || || ||| | |||||||||||| ||
Sbjct: 250 aatgagcagtcagttgcaactttctttagtcaagttatggccaatattgggggaaacact 309
Query: 631 gctggagcaggtgattctgttgtcaatgtctacatcaatcatgagaagaaatttgcattt 690
||||| |||||||| |||| |||||||| | ||| || ||||| | ||| || || ||
Sbjct: 310 gctggcccaggtgatgctgtagtcaatgtttgcattaaccatgacatgaatttcgctttc 369
Query: 691 ctggaaatgaggactgttgaagaagctagtaatgcaatgtcattagatgggat 743
|||| |||||| ||||||| |||||||| ||||| ||| | |||||||||||
Sbjct: 370 gtggagatgaggtctgttgaggaagctagcaatgctatggctttagatgggat 422