Miyakogusa Predicted Gene
- Lj6g3v2006970.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v2006970.1 Non Chatacterized Hit- tr|I3T3J6|I3T3J6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,63.04,3e-17,seg,NULL; coiled-coil,NULL,CUFF.60502.1
(881 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64379 similar to UniRef100_Q01197 Cluster: Protein E6... 1746 0.0
gnl|LJGI|TC63599 111 7e-24
gnl|LJGI|GO007877 weakly similar to UniRef100_Q41725 Cluster: TE... 80 3e-14
gnl|LJGI|BP046165 weakly similar to UniRef100_Q7XDI5 Cluster: RN... 52 6e-06
>gnl|LJGI|TC64379 similar to UniRef100_Q01197 Cluster: Protein E6; n=1; Gossypium
hirsutum|Rep: Protein E6 - Gossypium hirsutum (Upland
cotton) (Gossypium mexicanum), partial (29%)
Length = 1176
Score = 1746 bits (881), Expect = 0.0
Identities = 881/881 (100%)
Strand = Plus / Plus
Query: 1 atggctcccttttcaaactatatctctttccttttcttcacagcccttctcttgcctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atggctcccttttcaaactatatctctttccttttcttcacagcccttctcttgcctcta 111
Query: 61 caaatcattgccagagaaagccaattcttcagcaaagtcacccatttcaacaacaacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 caaatcattgccagagaaagccaattcttcagcaaagtcacccatttcaacaacaacaac 171
Query: 121 aatgtcaaagaggcagaacttcccaatcccaacaaagatgagcaagtaacaaacaagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aatgtcaaagaggcagaacttcccaatcccaacaaagatgagcaagtaacaaacaagcca 231
Query: 181 gagcaacaaccagctttcatccctgaaactgaaaacagctatggcttatatggccatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gagcaacaaccagctttcatccctgaaactgaaaacagctatggcttatatggccatgat 291
Query: 241 gatgagtctgctcagctcccttcccccaccaccactacaaatcagccactcaacacagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gatgagtctgctcagctcccttcccccaccaccactacaaatcagccactcaacacagag 351
Query: 301 tttgaggacacaagcaagtacccaaacaacaagcactccaattactacaacaatgatgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttgaggacacaagcaagtacccaaacaacaagcactccaattactacaacaatgatgcc 411
Query: 361 tacaacaccagactctacaacaaggatgctttgggaaatgaccaaaatgagttgacctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tacaacaccagactctacaacaaggatgctttgggaaatgaccaaaatgagttgacctac 471
Query: 421 acaaaggaaggaagaggtggttacaacacccctcacatcggaaataaccaaaatgagttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acaaaggaaggaagaggtggttacaacacccctcacatcggaaataaccaaaatgagttg 531
Query: 481 agctactcagaggaaggaagaggaggatacaactccccaaggtcccacatgggaaatcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agctactcagaggaaggaagaggaggatacaactccccaaggtcccacatgggaaatcag 591
Query: 541 aataacaagcaggagtattacttcaacaacaacaatgctgccaatgagagacactactac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aataacaagcaggagtattacttcaacaacaacaatgctgccaatgagagacactactac 651
Query: 601 tccaacaacaataacaacaattatgctgctgtcaataacaggtacaataatgttgagaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tccaacaacaataacaacaattatgctgctgtcaataacaggtacaataatgttgagaag 711
Query: 661 caagggatgagtgacacaaggtttttggagggtggaaaatacttctatgacatgaacaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 caagggatgagtgacacaaggtttttggagggtggaaaatacttctatgacatgaacaat 771
Query: 721 gagaaatacaatccaacacactatgatgactcatacagaggagtgaacactaataactgg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gagaaatacaatccaacacactatgatgactcatacagaggagtgaacactaataactgg 831
Query: 781 tacaacaacagaggcaataataactatggcaacaacaacaagaatgcttaccagaaccag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tacaacaacagaggcaataataactatggcaacaacaacaagaatgcttaccagaaccag 891
Query: 841 gaggagtttgaagatgaacaaaatgaatttgagccatgagc 881
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaggagtttgaagatgaacaaaatgaatttgagccatgagc 932
>gnl|LJGI|TC63599
Length = 1208
Score = 111 bits (56), Expect = 7e-24
Identities = 146/174 (83%), Gaps = 9/174 (5%)
Strand = Plus / Plus
Query: 69 tgccagagaaagccaattcttcagcaaagtcacccattt---caacaacaacaacaatgt 125
||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 115 tgccagagacagccagttcttcagcaaagtcacccatgtcaacaacaacaacaacaatgt 174
Query: 126 caaagaggcagaacttcccaatcccaacaaagatgagcaagtaacaaacaagccagagca 185
||||||| |||| ||||||| |||||| || | | || |||||||||||||||
Sbjct: 175 caaagagacagagtttcccaa---caacaatgaagtaccggt---aaacaagccagagca 228
Query: 186 acaaccagctttcatccctgaaactgaaaacagctatggcttatatggccatga 239
|||||||| |||| ||| || |||||||||||||||||| | |||||||||||
Sbjct: 229 acaaccagtcttcaccccagagactgaaaacagctatggcctttatggccatga 282
Score = 79.8 bits (40), Expect = 3e-14
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 660 gcaagggatgagtgacacaaggtttttggagggtggaaaatacttcta 707
|||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 694 gcaagggatgagtgacactaggtttatggagggtggaaaatacttcta 741
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 828 ttaccagaaccaggaggagtttgaagatga 857
|||| |||||||||||||||||||||||||
Sbjct: 886 ttacaagaaccaggaggagtttgaagatga 915
>gnl|LJGI|GO007877 weakly similar to UniRef100_Q41725 Cluster: TED3; n=1; Zinnia
elegans|Rep: TED3 - Zinnia elegans (Zinnia), partial
(9%)
Length = 566
Score = 79.8 bits (40), Expect = 3e-14
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 660 gcaagggatgagtgacacaaggtttttggagggtggaaaatacttcta 707
|||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 121 gcaagggatgagtgacactaggtttatggagggtggaaaatacttcta 168
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 828 ttaccagaaccaggaggagtttgaagatga 857
|||| |||||||||||||||||||||||||
Sbjct: 313 ttacaagaaccaggaggagtttgaagatga 342
>gnl|LJGI|BP046165 weakly similar to UniRef100_Q7XDI5 Cluster: RNA recognition motif
family protein, expressed; n=3; Oryza sativa|Rep: RNA
recognition motif family protein, expressed - Oryza
sativa subsp. japonica (Rice), partial (5%)
Length = 494
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 828 ttaccagaaccaggaggagtttgaagatga 857
||||||||||| ||||||||||||||||||
Sbjct: 211 ttaccagaacccggaggagtttgaagatga 182