Miyakogusa Predicted Gene

Lj6g3v1951740.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1951740.1 CUFF.60284.1
         (213 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76277 homologue to UniRef100_O22860 Cluster: 60S ribo...   422   e-118
gnl|LJGI|TC77180 homologue to UniRef100_O22860 Cluster: 60S ribo...   262   8e-70
gnl|LJGI|TC70373 homologue to UniRef100_O22860 Cluster: 60S ribo...   208   1e-53
gnl|LJGI|BW599415 weakly similar to UniRef100_Q7YXK4 Cluster: Ma...    58   2e-08
gnl|LJGI|BP081416                                                      58   2e-08

>gnl|LJGI|TC76277 homologue to UniRef100_O22860 Cluster: 60S ribosomal protein L38;
           n=1; Arabidopsis thaliana|Rep: 60S ribosomal protein L38
           - Arabidopsis thaliana (Mouse-ear cress), complete
          Length = 489

 Score =  422 bits (213), Expect = e-118
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctaagcaaattcacgagatcaaggatttcctcctcactgcccggaggaaggatgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atgcctaagcaaattcacgagatcaaggatttcctcctcactgcccggaggaaggatgcg 178

                                                                       
Query: 61  aggtcggtgaaaatcaagaggagcagagatgtggtcaagttcaaggtcagatgctcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aggtcggtgaaaatcaagaggagcagagatgtggtcaagttcaaggtcagatgctcaaag 238

                                                                       
Query: 121 tatctctacacactctgtgtgtttgaccctgagaaagctgataagttgaagcaatcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tatctctacacactctgtgtgtttgaccctgagaaagctgataagttgaagcaatcactt 298

                                            
Query: 181 cctccaggtttgagtgttcaagacctgtagagg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 299 cctccaggtttgagtgttcaagacctgtagagg 331


>gnl|LJGI|TC77180 homologue to UniRef100_O22860 Cluster: 60S ribosomal protein L38;
           n=1; Arabidopsis thaliana|Rep: 60S ribosomal protein L38
           - Arabidopsis thaliana (Mouse-ear cress), complete
          Length = 418

 Score =  262 bits (132), Expect = 8e-70
 Identities = 189/208 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctaagcaaattcacgagatcaaggatttcctcctcactgcccggaggaaggatgcg 60
           ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| 
Sbjct: 49  atgccgaagcaaattcatgagatcaaagacttcctcctcactgcccggaggaaggatgca 108

                                                                       
Query: 61  aggtcggtgaaaatcaagaggagcagagatgtggtcaagttcaaggtcagatgctcaaag 120
            | |||||||||||||||||||||| |||||||||||||||||||||| | ||||| || 
Sbjct: 109 cgttcggtgaaaatcaagaggagcaaagatgtggtcaagttcaaggtccggtgctccaaa 168

                                                                       
Query: 121 tatctctacacactctgtgtgtttgaccctgagaaagctgataagttgaagcaatcactt 180
           || || ||||| || |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 169 tacctgtacaccctttgtgtgtttgacactgagaaggctgataagttgaagcaatcactt 228

                                       
Query: 181 cctccaggtttgagtgttcaagacctgt 208
           || |||||||||||||||||||||||||
Sbjct: 229 cccccaggtttgagtgttcaagacctgt 256


>gnl|LJGI|TC70373 homologue to UniRef100_O22860 Cluster: 60S ribosomal protein L38;
           n=1; Arabidopsis thaliana|Rep: 60S ribosomal protein L38
           - Arabidopsis thaliana (Mouse-ear cress), complete
          Length = 544

 Score =  208 bits (105), Expect = 1e-53
 Identities = 165/185 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctaagcaaattcacgagatcaaggatttcctcctcactgcccggaggaaggatgcg 60
           ||||| ||||||||||| ||||||||||| ||||| ||||||||  ||||||||||||| 
Sbjct: 56  atgccgaagcaaattcatgagatcaaggacttccttctcactgctaggaggaaggatgca 115

                                                                       
Query: 61  aggtcggtgaaaatcaagaggagcagagatgtggtcaagttcaaggtcagatgctcaaag 120
            | || ||||| ||||||||||||| |||||||||||||||||||||| | ||||| |||
Sbjct: 116 cgctccgtgaagatcaagaggagcaaagatgtggtcaagttcaaggtccgttgctccaag 175

                                                                       
Query: 121 tatctctacacactctgtgtgtttgaccctgagaaagctgataagttgaagcaatcactt 180
           ||||| ||||| || |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 176 tatctgtacaccctgtgtgtgtttgacactgagaaggctgataagttgaagcaatcactt 235

                
Query: 181 cctcc 185
           |||||
Sbjct: 236 cctcc 240


>gnl|LJGI|BW599415 weakly similar to UniRef100_Q7YXK4 Cluster: Major sperm protein;
          n=1; Ascaris suum|Rep: Major sperm protein - Ascaris
          suum (Pig roundworm) (Ascaris lumbricoides), partial
          (12%)
          Length = 498

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 31 ttcctcctcactgcccggaggaaggatgc 59
          |||||||||||||||||||||||||||||
Sbjct: 49 ttcctcctcactgcccggaggaaggatgc 77


>gnl|LJGI|BP081416 
          Length = 307

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 185 caggtttgagtgttcaagacctgtagagg 213
           |||||||||||||||||||||||||||||
Sbjct: 187 caggtttgagtgttcaagacctgtagagg 159