Miyakogusa Predicted Gene

Lj6g3v1946530.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1946530.1 Non Chatacterized Hit- tr|B9SKQ1|B9SKQ1_RICCO
Brca1 associated ring domain, putative OS=Ricinus
comm,43.21,0.0000000000002,ZF_RING_1,Zinc finger, RING-type, conserved
site; RING/U-box,NULL; zf-C3HC4_2,NULL; ZF_RING_2,Zinc f,CUFF.60262.1
         (288 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64342 similar to UniRef100_A7Q1A3 Cluster: Chromosome...   571   e-163

>gnl|LJGI|TC64342 similar to UniRef100_A7Q1A3 Cluster: Chromosome chr10 scaffold_43,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr10 scaffold_43, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 792

 Score =  571 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtgatctcgagagaatgggtagagaactcaaatgccccatctgtttgagtttgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37  atgggtgatctcgagagaatgggtagagaactcaaatgccccatctgtttgagtttgctc 96

                                                                       
Query: 61  gattccgcgatttcactcacctgcaatcatcttttctgcaactcatgcatactcaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gattccgcgatttcactcacctgcaatcatcttttctgcaactcatgcatactcaaatct 156

                                                                       
Query: 121 atgaaatctgcatctgcttgtcctgtctgtaaaatacccttcacccgtcgagaggttcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgaaatctgcatctgcttgtcctgtctgtaaaatacccttcacccgtcgagaggttcgc 216

                                                                       
Query: 181 cctgctcctcacatggacaacttggtcaccatctacaaaaacatggaagctgcttctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cctgctcctcacatggacaacttggtcaccatctacaaaaacatggaagctgcttctgga 276

                                                           
Query: 241 atcaccatgtttgtcacccagaataatctacctcctatcaaatcatca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atcaccatgtttgtcacccagaataatctacctcctatcaaatcatca 324