Miyakogusa Predicted Gene
- Lj6g3v1946500.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1946500.1 Non Chatacterized Hit- tr|B8BBH4|B8BBH4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,38.26,0.000000000008,RNI-like,NULL; Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat,
cysteine-containing,CUFF.60259.1
(948 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72224 weakly similar to UniRef100_Q2HSK3 Cluster: Cyc... 1104 0.0
gnl|LJGI|TC80165 174 6e-43
gnl|LJGI|TC80874 weakly similar to UniRef100_O82023 Cluster: N7 ... 94 2e-18
gnl|LJGI|TC63939 similar to UniRef100_Q2HSK3 Cluster: Cyclin-lik... 54 2e-06
>gnl|LJGI|TC72224 weakly similar to UniRef100_Q2HSK3 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (18%)
Length = 647
Score = 1104 bits (557), Expect = 0.0
Identities = 557/557 (100%)
Strand = Plus / Plus
Query: 1 atggacacaccgtcgtcgtcgaattcgaaggcactcgccgattccggcgaagaacgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atggacacaccgtcgtcgtcgaattcgaaggcactcgccgattccggcgaagaacgaaac 150
Query: 61 tggctcgaccttccacgtgacgtggcgtccaccattttcctgaagctcggcgcgatcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tggctcgaccttccacgtgacgtggcgtccaccattttcctgaagctcggcgcgatcgag 210
Query: 121 atcctgaccaccgttcagcgtgtttgctccgtgtggcgcaacatcaccaaggaccctacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 atcctgaccaccgttcagcgtgtttgctccgtgtggcgcaacatcaccaaggaccctacc 270
Query: 181 atgtggcgcaccatcgacatgcataatttgggggattctcgctacaatttagacaccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgtggcgcaccatcgacatgcataatttgggggattctcgctacaatttagacaccatc 330
Query: 241 tgccgccgcgctatcgactacagctccggccacttgctcgatatcaacatcgagtatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgccgccgcgctatcgactacagctccggccacttgctcgatatcaacatcgagtatttc 390
Query: 301 ggtaccgatgatctccttgactatatcactgattcgacaagtcatctacgacgcctacgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtaccgatgatctccttgactatatcactgattcgacaagtcatctacgacgcctacgt 450
Query: 361 cttgcatgttgttatagcatatcagatgaaggattaagtgaaattgcaaaaaagtttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttgcatgttgttatagcatatcagatgaaggattaagtgaaattgcaaaaaagtttcct 510
Query: 421 cagctggaggaacttgatatatcaatcagcagcttgtccaaagagccgctagaagttatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagctggaggaacttgatatatcaatcagcagcttgtccaaagagccgctagaagttatt 570
Query: 481 ggccgaagttgccctcgcttgaaaaccttgaaattcaacatggaagggtatagacgtcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggccgaagttgccctcgcttgaaaaccttgaaattcaacatggaagggtatagacgtcca 630
Query: 541 cacatagagagtgatga 557
|||||||||||||||||
Sbjct: 631 cacatagagagtgatga 647
>gnl|LJGI|TC80165
Length = 410
Score = 174 bits (88), Expect = 6e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 861 tgatgacgattatgactattatggattctcaggtgggagtgaactttctgattatgatta 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgacgattatgactattatggattctcaggtgggagtgaactttctgattatgatta 60
Query: 921 tgattatgatgagtattatgccttttga 948
||||||||||||||||||||||||||||
Sbjct: 61 tgattatgatgagtattatgccttttga 88
>gnl|LJGI|TC80874 weakly similar to UniRef100_O82023 Cluster: N7 protein; n=1;
Medicago truncatula|Rep: N7 protein - Medicago
truncatula (Barrel medic), partial (34%)
Length = 1017
Score = 93.7 bits (47), Expect = 2e-18
Identities = 107/127 (84%)
Strand = Plus / Plus
Query: 551 gtgatgaggaggcatttgctgttgcagaaaccatgcctgagttacgccatctccagcttt 610
||||||| |||||||||||| ||||| ||||||||||| || | | ||||| |||||||
Sbjct: 652 gtgatgatgaggcatttgctattgcaaaaaccatgcctcagctgtgtcatcttcagcttt 711
Query: 611 tcggaaacaagctgactaatgatggcttgcttgccattcttgatggctgtcctcaccttg 670
| ||||||| ||| |||||| | |||||| |||| ||||||||||| || ||||| ||||
Sbjct: 712 tgggaaacaggctcactaataacggcttgattgctattcttgatgggtgccctcatcttg 771
Query: 671 aaactct 677
|| ||||
Sbjct: 772 aatctct 778
>gnl|LJGI|TC63939 similar to UniRef100_Q2HSK3 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (37%)
Length = 840
Score = 54.0 bits (27), Expect = 2e-06
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 574 gcagaaaccatgcctgagttacgccatctccagcttttcggaaacaagctgactaatgat 633
|||||||| ||||||||| | || || || ||| || | ||||||| || | |||||||
Sbjct: 336 gcagaaacaatgcctgagctgcgtcacctacagattatgggaaacagtctcagtaatgat 395
Query: 634 ggcttgcttgccattcttgatgg 656
||||||||||| |||||||||||
Sbjct: 396 ggcttgcttgctattcttgatgg 418