Miyakogusa Predicted Gene
- Lj6g3v1946380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1946380.1 Non Chatacterized Hit- tr|D8QXH8|D8QXH8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.81,3e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
LSM,Ribonucleoprotein LSM domain; no description,NUL,CUFF.60256.1
(337 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS318316 similar to UniRef100_A7P4Z8 Cluster: Chromosom... 668 0.0
gnl|LJGI|BP050346 similar to UniRef100_A7P4Z8 Cluster: Chromosom... 668 0.0
gnl|LJGI|TC58670 similar to UniRef100_A7P4Z8 Cluster: Chromosome... 668 0.0
gnl|LJGI|TC80588 weakly similar to UniRef100_Q653U6 Cluster: Sma... 355 1e-97
>gnl|LJGI|FS318316 similar to UniRef100_A7P4Z8 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (58%)
Length = 703
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Plus
Query: 1 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 220
Query: 61 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 280
Query: 121 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 340
Query: 181 gctgtggagtatcgtagcactcgacgatcatcaccttctccaatggagcagcggtgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gctgtggagtatcgtagcactcgacgatcatcaccttctccaatggagcagcggtgcctt 400
Query: 241 ggtctcattctgattccttcttcttgtcgggcgacgtgtcatgtggattgctctatcgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggtctcattctgattccttcttcttgtcgggcgacgtgtcatgtggattgctctatcgat 460
Query: 301 gaacagttgtccctgctatcacttcgtgaaacatgag 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaacagttgtccctgctatcacttcgtgaaacatgag 497
>gnl|LJGI|BP050346 similar to UniRef100_A7P4Z8 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (58%)
Length = 561
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Minus
Query: 1 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 404
Query: 61 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 344
Query: 121 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 284
Query: 181 gctgtggagtatcgtagcactcgacgatcatcaccttctccaatggagcagcggtgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gctgtggagtatcgtagcactcgacgatcatcaccttctccaatggagcagcggtgcctt 224
Query: 241 ggtctcattctgattccttcttcttgtcgggcgacgtgtcatgtggattgctctatcgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggtctcattctgattccttcttcttgtcgggcgacgtgtcatgtggattgctctatcgat 164
Query: 301 gaacagttgtccctgctatcacttcgtgaaacatgag 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaacagttgtccctgctatcacttcgtgaaacatgag 127
>gnl|LJGI|TC58670 similar to UniRef100_A7P4Z8 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (58%)
Length = 803
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Plus
Query: 1 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 284
Query: 61 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 344
Query: 121 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 404
Query: 181 gctgtggagtatcgtagcactcgacgatcatcaccttctccaatggagcagcggtgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gctgtggagtatcgtagcactcgacgatcatcaccttctccaatggagcagcggtgcctt 464
Query: 241 ggtctcattctgattccttcttcttgtcgggcgacgtgtcatgtggattgctctatcgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggtctcattctgattccttcttcttgtcgggcgacgtgtcatgtggattgctctatcgat 524
Query: 301 gaacagttgtccctgctatcacttcgtgaaacatgag 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaacagttgtccctgctatcacttcgtgaaacatgag 561
>gnl|LJGI|TC80588 weakly similar to UniRef100_Q653U6 Cluster: Small nuclear
ribonucleoprotein-like; n=2; Oryza sativa|Rep: Small
nuclear ribonucleoprotein-like - Oryza sativa subsp.
japonica (Rice), partial (41%)
Length = 393
Score = 355 bits (179), Expect = 1e-97
Identities = 191/195 (97%)
Strand = Plus / Plus
Query: 1 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atggaacaagaagcagaacaaccgattcccgttcaagtagggacctcagatagttcaagt 258
Query: 61 cgtgtgagtcgggtaaggaagctgctgtttcgccggatgctggtggggattaaagatgga 120
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 259 cgtgtgagtcgggtaaggaagctgctgtggcgccggatgcgggtggggattaaagatgga 318
Query: 121 agattcttcttgggtggcttctactgcattgacaagcaggggaacattattctccaggat 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 agattcttcttgggtggcttctactgcattgacaaacaggggaacattattctccaggat 378
Query: 181 gctgtggagtatcgt 195
|||||||||||||||
Sbjct: 379 gctgtggagtatcgt 393