Miyakogusa Predicted Gene
- Lj6g3v1916050.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1916050.1 Non Chatacterized Hit- tr|I1MF88|I1MF88_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34159 PE,71.11,0,SBT
domain,Transcription factor, SBP-box; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; SBP,Trans,CUFF.60170.1
(2397 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81234 similar to UniRef100_Q6I576 Cluster: Squamosa p... 1570 0.0
gnl|LJGI|TC66445 weakly similar to UniRef100_A3DHI5 Cluster: Tra... 1166 0.0
gnl|LJGI|TC68961 54 4e-06
>gnl|LJGI|TC81234 similar to UniRef100_Q6I576 Cluster: Squamosa promoter-binding-like
protein 9; n=1; Oryza sativa Japonica Group|Rep:
Squamosa promoter-binding-like protein 9 - Oryza sativa
subsp. japonica (Rice), partial (12%)
Length = 820
Score = 1570 bits (792), Expect = 0.0
Identities = 814/820 (99%), Gaps = 1/820 (0%)
Strand = Plus / Plus
Query: 26 cgcaatcgcaatcgcaactgcaattgcaagcttctcttcctcttccaccacctccacaca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcaatcgcaatcgcaactgcaattgcaagcttctcttcctcttccaccacctccacaca 60
Query: 86 tggatcccgatgacccttcttcctccgtctgggacctcacttacctccttgacttcaacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggatcccgatgacccttcttcctccgtctgggacctcacttacctccttgacttcaacc 120
Query: 146 tcgacgacgacgcaccagttttccccttcgatgacaacaacctctcagaaacccctctca 205
||||| || |||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 tcgacaacaacgcaccagtgtgccccttcgatgacaacaacctctcaaaaacccctctca 180
Query: 206 ccgaccctcaggatcaggaggaggagactcacaaggtccgaaagcgtgacccgatgctca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccgaccctcaggatcaggaggaggagactcacaaggtccgaaagcgtgacccgatgctca 240
Query: 266 catgccccaactttctcgcgggtcgggtcccatgcgcatgcccc-gagatggacgcgcta 324
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 catgccccaactttctcgcgggtcgggtcccatgcgcatgcccccgagatggacgcgcta 300
Query: 325 ctcgaggaacaaggtttacccgccaacaaacgccctaggaccgcaccgtcggcggcgcgc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcgaggaacaaggtttacccgccaacaaacgccctaggaccgcaccgtcggcggcgcgc 360
Query: 385 tgccaggttcctggctgcgaggttgatatctctgagctcaagggctatcaccggaggcac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgccaggttcctggctgcgaggttgatatctctgagctcaagggctatcaccggaggcac 420
Query: 445 agggtttgtctgcgctgtgcaaatgctcctaccgttgtcttcaacggcgaggctaagaga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agggtttgtctgcgctgtgcaaatgctcctaccgttgtcttcaacggcgaggctaagaga 480
Query: 505 tactgtcagcagtgtggaaagtttcatgttttgtcggatttcgacgaaggtaaacggagc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tactgtcagcagtgtggaaagtttcatgttttgtcggatttcgacgaaggtaaacggagc 540
Query: 565 tgtagaaggaagttggagcgccataacaacaggaggcgaaggaaggctccggattctaga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtagaaggaagttggagcgccataacaacaggaggcgaaggaaggctccggattctaga 600
Query: 625 gctgcagctgatcatgaacctcaagctgttactcaaaatgaagagttcagtggtgatctc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctgcagctgatcatgaacctcaagctgttactcaaaatgaagagttcagtggtgatctc 660
Query: 685 gaagcgggaaaagattgttcaaatttgagtagtgagatagttgaaaaagaagcgtcaccg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaagcgggaaaagattgttcaaatttgagtagtgagatagttgaaaaagaagcgtcaccg 720
Query: 745 ccgtcacgggatcatgaagaggaacctgttgctgtttggtcgtcaactcttgatacacct 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccgtcacgggatcatgaagaggaacctgttgctgtttggtcgtcaactcttgatacacct 780
Query: 805 aatattaatggtgatagtgttgtgtcttttgttgcttctg 844
||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aatattaatggtgatagtgttgtgtcttttgttgcttctg 820
>gnl|LJGI|TC66445 weakly similar to UniRef100_A3DHI5 Cluster: Transcriptional
regulator, AraC family; n=1; Clostridium thermocellum
ATCC 27405|Rep: Transcriptional regulator, AraC family -
Clostridium thermocellum (strain ATCC 27405 / DSM 1237),
partial (7%)
Length = 843
Score = 1166 bits (588), Expect = 0.0
Identities = 591/592 (99%)
Strand = Plus / Plus
Query: 1806 tcaaagatattgttatctgttggattttctaatatgcaatgattcaacaatcattttggg 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaagatattgttatctgttggattttctaatatgcaatgattcaacaatcattttggg 60
Query: 1866 aagaatattgccgaatttgataatcttgacagaaagcatgaaatcaaattttgtgattaa 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagaatattgccgaatttgataatcttgacagaaagcatgaaatcaaattttgtgattaa 120
Query: 1926 tagaatcagtgatattgacatgaccgaactactaaaatgcatgcataatgctagagatgc 1985
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagaatcagtgatatcgacatgaccgaactactaaaatgcatgcataatgctagagatgc 180
Query: 1986 catttgtcagaagcatcggaaagatggaggtgtagttgcaccctctgaaatggaagactt 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catttgtcagaagcatcggaaagatggaggtgtagttgcaccctctgaaatggaagactt 240
Query: 2046 tgaagcagctcagagcggctcccaaaataacatgcaatcagttgttgcagttaactatca 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaagcagctcagagcggctcccaaaataacatgcaatcagttgttgcagttaactatca 300
Query: 2106 gggtatcctgcccggaccagattcaaatttgacagttctgagatgtcccactagcaatga 2165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gggtatcctgcccggaccagattcaaatttgacagttctgagatgtcccactagcaatga 360
Query: 2166 caaaaatgaaaagataccacttttgaagcaggagattataatgaatgtggaagagttccc 2225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaaaatgaaaagataccacttttgaagcaggagattataatgaatgtggaagagttccc 420
Query: 2226 taaaagatgcgaccggcgatatcttaccaggggactcttgagctctcgaccagctatttt 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaaagatgcgaccggcgatatcttaccaggggactcttgagctctcgaccagctatttt 480
Query: 2286 tatggctgtttcagttgctgtttgccttggtgtatgtgtatccgtccttcatcatcatgg 2345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatggctgtttcagttgctgtttgccttggtgtatgtgtatccgtccttcatcatcatgg 540
Query: 2346 gagggttagtgagttggcattatccattagaaggtgcttgtttaactactag 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gagggttagtgagttggcattatccattagaaggtgcttgtttaactactag 592
>gnl|LJGI|TC68961
Length = 1185
Score = 54.0 bits (27), Expect = 4e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 aatcacaatcgcaatcgcaatcgcaatcgca 41
|||| ||||||||||||||||||||||||||
Sbjct: 37 aatcgcaatcgcaatcgcaatcgcaatcgca 67