Miyakogusa Predicted Gene
- Lj6g3v1887770.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1887770.1 tr|I1M167|I1M167_SOYBN Elongation factor Tu
(Fragment) OS=Glycine max PE=3 SV=1,89.75,0,GTPBP2 PROTEIN,NULL;
TRANSLATION FACTOR,NULL; GTP_EFTU_D3,Translation elongation factor
EFTu/EF1A, C,CUFF.60092.1
(744 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59806 homologue to UniRef100_Q9ZT91 Cluster: Elongati... 287 5e-77
gnl|LJGI|TC76340 homologue to UniRef100_Q9ZT91 Cluster: Elongati... 184 5e-46
>gnl|LJGI|TC59806 homologue to UniRef100_Q9ZT91 Cluster: Elongation factor Tu,
mitochondrial precursor; n=2; Arabidopsis thaliana|Rep:
Elongation factor Tu, mitochondrial precursor -
Arabidopsis thaliana (Mouse-ear cress), partial (55%)
Length = 1004
Score = 287 bits (145), Expect = 5e-77
Identities = 490/605 (80%)
Strand = Plus / Plus
Query: 112 aaggctatcttaaaactaatggatgctgtggatggatacatttctgatcctgtgcggcag 171
|||||||| ||||| ||||||||||||| |||| ||||||| |||| |||||||| |||
Sbjct: 130 aaggctattctaaaattaatggatgctgtagatgaatacattcctgaccctgtgcgccag 189
Query: 172 cttgataagcctttcctaatgccaatagaagatgttttctccattcaagggcgtggaact 231
|| || | ||||| ||||||||||| |||||||| ||||||||||| || || |||||
Sbjct: 190 ctcgacagaccttttctaatgccaattgaagatgtattctccattcagggacgaggaaca 249
Query: 232 gttgtgactggtcgtgttgaacaaggcaccgtcaaagttggtgaggaggttgaaatattg 291
|| | ||||| |||||||||||||| ||||||||||||| || ||||| | |||
Sbjct: 250 gtagctactggccgtgttgaacaaggggtaatcaaagttggtgatgaagttgaggttttg 309
Query: 292 ggactgacacagggtggacctttgaagactactgtaactggtgtggaaatgtttaagaaa 351
|| || | |||||||| ||| | || || || |||||||| ||||| ||||| |||||
Sbjct: 310 ggtctcatgcagggtggtcctctaaaaacaacagtaactggagtggagatgttcaagaag 369
Query: 352 attttggatcggggggaagctggtgataatgtgggacttcttctacgaggtctgaagcgt 411
|||||||||| || |||| ||||||||||| || |||||||| || |||||||| |||
Sbjct: 370 attttggatcaaggacaagccggtgataatgttggtcttcttctccgtggtctgaaacgt 429
Query: 412 gacgatgtacaaaggggaatggttgtctccaagcctggtgcactgaaagcgtataagaag 471
|| ||| | ||| | || ||| | | ||||||||| | | ||| | || ||||||
Sbjct: 430 gaagatattcaacgtggtcaggtcattgctaagcctggttctgtaaaaacatacaagaag 489
Query: 472 tttgaagccgagatttatgtcctctcgaaagatgaaggtggccgtcatactgcttttttc 531
||||| || ||||||||||| ||| | || || || || || || || ||||||||||||
Sbjct: 490 tttgaggcagagatttatgtgctcacaaaggacgagggagggcgacacactgcttttttc 549
Query: 532 tctaactataagcctcagttttacttgaggactgcagatattacaggaacagtgcaatta 591
||||||||||||||||||||||||||||||||||| ||||| || ||| |||| | ||
Sbjct: 550 tctaactataagcctcagttttacttgaggactgctgatatcactggatcagtagagttg 609
Query: 592 cctgacaatgttaagatggttatgcctggtgataacgtgtctgcaacttttgagctgatt 651
||||| |||||||| |||||||||||||| || ||||| |||| || ||||| |||||
Sbjct: 610 cctgaaaatgttaaaatggttatgcctggagacaacgttactgccacatttgatttgatt 669
Query: 652 tcacctgttcctcttgaaacaggacaaagatttgctttgagagagggaggcaggacagtt 711
||||| ||||| |||||| |||||||| ||||||| ||||||||||| || || ||||||
Sbjct: 670 tcaccagttccacttgaaccaggacaacgatttgccttgagagagggtgggagaacagtt 729
Query: 712 ggtgc 716
|||||
Sbjct: 730 ggtgc 734
>gnl|LJGI|TC76340 homologue to UniRef100_Q9ZT91 Cluster: Elongation factor Tu,
mitochondrial precursor; n=2; Arabidopsis thaliana|Rep:
Elongation factor Tu, mitochondrial precursor -
Arabidopsis thaliana (Mouse-ear cress), partial (19%)
Length = 605
Score = 184 bits (93), Expect = 5e-46
Identities = 171/197 (86%)
Strand = Plus / Plus
Query: 520 actgcttttttctctaactataagcctcagttttacttgaggactgcagatattacagga 579
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 42 actgcttttttctctaactataagcctcagttttacttgaggactgctgatatcactgga 101
Query: 580 acagtgcaattacctgacaatgttaagatggttatgcctggtgataacgtgtctgcaact 639
|||| | || ||||| |||||||| |||||||||||||| || ||||| |||| ||
Sbjct: 102 tcagtagagttgcctgaaaatgttaaaatggttatgcctggagacaacgttactgccaca 161
Query: 640 tttgagctgatttcacctgttcctcttgaaacaggacaaagatttgctttgagagaggga 699
||||| |||||||||| ||||| |||||| |||||||| ||||||| |||||||||||
Sbjct: 162 tttgatttgatttcaccagttccacttgaaccaggacaacgatttgccttgagagagggt 221
Query: 700 ggcaggacagttggtgc 716
|| || |||||||||||
Sbjct: 222 gggagaacagttggtgc 238