Miyakogusa Predicted Gene
- Lj6g3v1880080.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1880080.2 tr|C7J964|C7J964_ORYSJ Os11g0572500 protein
OS=Oryza sativa subsp. japonica GN=Os11g0572500 PE=4
SV=,57.89,8e-18,seg,NULL; Ring finger,Zinc finger, RING-type;
OS04G0579200 PROTEIN,NULL; RING FINGER PROTEIN 11 (SID,CUFF.60042.2
(792 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78100 similar to UniRef100_A7NWH6 Cluster: Chromosome... 1475 0.0
gnl|LJGI|DC598165 52 5e-06
>gnl|LJGI|TC78100 similar to UniRef100_A7NWH6 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 1489
Score = 1475 bits (744), Expect = 0.0
Identities = 788/803 (98%), Gaps = 11/803 (1%)
Strand = Plus / Plus
Query: 1 atggctaatctcacctccttctcttcatctttcgtcgacgacgactcttccgaggactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atggctaatctcacctccttctcttcatctttcgtcgacgacgactcttccgaggactcc 193
Query: 61 tgcagtatctgtctagagtccttcaacgtccatgatccatccactgttacctgttgcaaa 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgcagtatctgtctagagtccctcaacgtccatgatccatccactgttacctgttgcaaa 253
Query: 121 catgaatatcatctgcattgcattcttgaatggtctcaaagaagcaaggaatgtccaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 catgaatatcatctgcattgcattcttgaatggtctcaaagaagcaaggaatgtccaata 313
Query: 181 tgttggcaatcacttgctttgaaagaccctgccagccaagagcttctagctgcagtggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgttggcaatcacttgctttgaaagaccctgccagccaagagcttctagctgcagtggag 373
Query: 241 gctgaaaaacgcttaagatcaagaaatgtaaattcatcttcattcgctaattctcgactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gctgaaaaacgcttaagatcaagaaatgtaaattcatcttcattcgctaattctcgactt 433
Query: 301 aatgatggtcatgatggttcttactcagaagaatgtgattttgatgaacaaattatgcag 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aatgatggtcatgacggttcttactcagaagaatgtgattttgatgaacaaattatgcaa 493
Query: 361 cacctagttgctgctgcaagtagggctcgttttgttcacagacaggaaaggcggggatcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cacctagttgctgctgcaagtagggctcgttttgttcacagacaggaaaggcggggatcg 553
Query: 421 gcgggagcaggtccgtctgcgaactcttctgtgcatgttcgtcgagagcaaccgacccct 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcaggagcaggtccgtctgcgaactcttctgtgcatgttcgtcgagagcaaccgacccct 613
Query: 481 acaacaacttcgctatctcagggtagttcaccaacttctggtgtaccatcaaatgtgaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 acaacaacttcgctatctcagggtagttcaccaacttctggtgtaccatcaaatgtgaac 673
Query: 541 aatcaacctccaacacctgttgttgatgaggttgctagaaatactagtcctcaaactgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aatcaacctccaacacctgttgttgatgaggttgctagaaatactagtcctcaaactgat 733
Query: 601 gttcctttcagagccagagttatctatagccagacaccacctgagagtgcgaggagacta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gttcctttcagagccagagttatctatagccagacaccacctgagagtgcgaggagacta 793
Query: 661 aacact-ccggagatgttctccttccctgaatccatcaaatccaaattttctgctgcttc 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aacactcccggagatgttctccttccctgaatccatcaaatccaaattttctgctgcttc 853
Query: 720 agccaa----------atacaaggaatcaatttcaaaaggtacccgtggcctcaaagaga 769
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 agccaattttgaacagatacaaggaatcaatttcaaaaggtacccgtggcctcaaagaga 913
Query: 770 agttacttgcccgtaatgcatca 792
|||||||||||||||||||||||
Sbjct: 914 agttacttgcccgtaatgcatca 936
>gnl|LJGI|DC598165
Length = 387
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 177 aatatgttggcaatcacttgctttgaaaga 206
||||||||||| ||||||||||||||||||
Sbjct: 315 aatatgttggccatcacttgctttgaaaga 344