Miyakogusa Predicted Gene
- Lj6g3v1839440.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1839440.1 tr|Q6K5M2|Q6K5M2_ORYSJ F-box family protein-like
OS=Oryza sativa subsp. japonica GN=P0677G01.25
PE=4,34.36,7e-18,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL,gene.g66766.t1.1
(1285 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS358917 weakly similar to UniRef100_A7P0M8 Cluster: Ch... 622 e-177
gnl|LJGI|FS344365 similar to UniRef100_A7R3T5 Cluster: Chromosom... 436 e-121
gnl|LJGI|TC74679 similar to UniRef100_A7R3T5 Cluster: Chromosome... 198 6e-50
gnl|LJGI|GO007466 similar to UniRef100_A7R3T5 Cluster: Chromosom... 176 2e-43
gnl|LJGI|TC74566 similar to UniRef100_A7R3T5 Cluster: Chromosome... 137 2e-31
gnl|LJGI|GO015790 similar to UniRef100_A7R3T6 Cluster: Chromosom... 111 1e-23
gnl|LJGI|TC68684 weakly similar to UniRef100_A7P0M5 Cluster: Chr... 74 2e-12
gnl|LJGI|BP071456 similar to UniRef100_A7R3T5 Cluster: Chromosom... 72 9e-12
>gnl|LJGI|FS358917 weakly similar to UniRef100_A7P0M8 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (37%)
Length = 689
Score = 622 bits (314), Expect = e-177
Identities = 415/448 (92%), Gaps = 3/448 (0%)
Strand = Plus / Minus
Query: 838 aagagaaaggacattgaagattatgacaggcttggaaacattgccttgaagattcacaag 897
|||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 624 aagagaaaagacattgaggattatgacagacttggaaacattgcattgaagattcacaag 565
Query: 898 aatttggccattgctgggcctttactcacaggcattgctgcagcagggtctgcatttgtt 957
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 564 aatttggccattgctgggcctttactcacaggcattgcagcagcagggtttgcatttgtg 505
Query: 958 ggcaatggttcttgggcagctttggttccactcatggctggctcattggctgctgcaatt 1017
|| ||||| || | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 ggaaatgggtcatatgcagctttggttccactcatggctggctcattggctgcagcaatt 445
Query: 1018 aacacttttgagcatggagggcaagtaggcatggtgtttgaaatgtacagaacatctgca 1077
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 aacactttggagcatggagggcaagtaggcatggtgtttgaaatgtacagaacatttgca 385
Query: 1078 ggcttcttcaacatggtagaaacctcaattgaatcaacattagaagagaaagatttggaa 1137
||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctttttcaacatgttggaaacctcaattgaatcaacattagaagagaaagatttggag 325
Query: 1138 agaagagaaaatggggaactctttgaaatgaatatggctttgcaattgggaagaagtgta 1197
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 agaagagagaatggggagctctttgaaatgaagatggctttgcaattgggaagaagtgta 265
Query: 1198 tcacagctgagggaacttgcctcaaaatcagcttcctatcgtatggaaggagttgttgac 1257
|||||||| |||||||||||||||||||||||||||||| | ||||||||| | |||
Sbjct: 264 tcacagctaagggaacttgcctcaaaatcagcttcctatagcatggaagga---atggac 208
Query: 1258 atagacgaatttgccagcaagctatttt 1285
|| || ||||||||||||||||| ||||
Sbjct: 207 attgatgaatttgccagcaagctttttt 180
>gnl|LJGI|FS344365 similar to UniRef100_A7R3T5 Cluster: Chromosome undetermined
scaffold_567, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_567,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 775
Score = 436 bits (220), Expect = e-121
Identities = 364/412 (88%)
Strand = Plus / Plus
Query: 245 aactctatgcaatcttggaggatgtagctgacagaattgaaatgcataataacattggcg 304
|||||||||||||||| |||| |||||| ||||||||||||||||| || ||||||||||
Sbjct: 354 aactctatgcaatcttagaggctgtagcagacagaattgaaatgcacaaaaacattggcg 413
Query: 305 agcaacgtgacaattggaacaccctccttttgaactccatcaacatgatcactctaactg 364
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 414 agcagcgtgacaattggaacacccttcttttgaactccatcaacatgatgactctcaccg 473
Query: 365 ccacaaccttggctggtgttgccgccaccactggagccggtgcgccgcttttagctttga 424
|||||||| ||||||||||||||||||||| ||| | |||||| || ||||||||| |||
Sbjct: 474 ccacaaccatggctggtgttgccgccaccattggcgacggtgcaccacttttagctctga 533
Query: 425 aactttcctctgctctgttgttttcagcagccacagggctgttgcttgtcatgaacaaga 484
|| | || |||||||| || ||||| || || ||||| |||||||| ||||||||||||
Sbjct: 534 aaatatcttctgctcttttattttctgcggctgcagggatgttgcttatcatgaacaaga 593
Query: 485 tccagccttctcaactcacagaggagcaaagaaatgccacaagattgtttaaacagctca 544
||||||| ||||||||||| ||||||||| | ||||| || |||||||||||||||||||
Sbjct: 594 tccagccctctcaactcacggaggagcaacgcaatgcaactagattgtttaaacagctca 653
Query: 545 agtcccacatcgaaaccacaattgcaattggaaatccttcagaggagtatataaagggtg 604
|||||||||| |||||||||||||| |||| ||||| | ||||| || | |||||||
Sbjct: 654 agtcccacattgaaaccacaattgcccttggcaatcccactgaggaagatgtgaagggtg 713
Query: 605 caatggaaaaggttctggctcttgacaaagcttacccacttcccttgttggg 656
||||||| |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 714 caatggagaaggttttggcccttgacaaagcttacccacttcccttgttggg 765
>gnl|LJGI|TC74679 similar to UniRef100_A7R3T5 Cluster: Chromosome undetermined
scaffold_567, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_567,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (10%)
Length = 568
Score = 198 bits (100), Expect = 6e-50
Identities = 139/152 (91%)
Strand = Plus / Plus
Query: 247 ctctatgcaatcttggaggatgtagctgacagaattgaaatgcataataacattggcgag 306
||||||||||||||||| | |||||||||||||||||||||||| | ||||||||||||
Sbjct: 383 ctctatgcaatcttggaagctgtagctgacagaattgaaatgcaccaaaacattggcgag 442
Query: 307 caacgtgacaattggaacaccctccttttgaactccatcaacatgatcactctaactgcc 366
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct: 443 cagcgtgacaattggaacacccttcttttgaactccatcaacatgattactctcacagcc 502
Query: 367 acaaccttggctggtgttgccgccaccactgg 398
|||||| |||||||||||||||| |||||||
Sbjct: 503 acaaccatggctggtgttgccgctgccactgg 534
>gnl|LJGI|GO007466 similar to UniRef100_A7R3T5 Cluster: Chromosome undetermined
scaffold_567, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_567,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (24%)
Length = 649
Score = 176 bits (89), Expect = 2e-43
Identities = 276/337 (81%), Gaps = 6/337 (1%)
Strand = Plus / Plus
Query: 245 aactctatgcaatcttggaggatgtagctgacagaattgaaatgcataataacattggcg 304
|||| |||||||| || || | |||||| ||||||||||||||||| || ||| |||
Sbjct: 303 aactttatgcaattttagaagctgtagcagacagaattgaaatgcacaacaacgttgctc 362
Query: 305 agcaacgtgacaattggaacaccctccttttgaactccatcaacatgatcactctaactg 364
||||||||||||||||||||||| || || ||||||||||||||||||||||| || |
Sbjct: 363 tacaacgtgacaattggaacacccttctgttaaactccatcaacatgatcactctcacgg 422
Query: 365 ccacaaccttggctggtgttgccgccaccactggagccggtgcgccgcttttagctttga 424
| ||||| ||||||||||||||| | |||| ||| || |||| ||| |||
Sbjct: 423 cttcaaccatggctggtgttgccggcgt---tggaa---gtgaaccaattttggctctga 476
Query: 425 aactttcctctgctctgttgttttcagcagccacagggctgttgcttgtcatgaacaaga 484
||||||| |||||||||||||| || || ||||||||| |||| ||||| |||||||| |
Sbjct: 477 aactttcatctgctctgttgttctctgcggccacagggatgttacttgtgatgaacaaaa 536
Query: 485 tccagccttctcaactcacagaggagcaaagaaatgccacaagattgtttaaacagctca 544
|||| || || ||||| |||| ||| || || ||||| ||||| ||||| || ||||||
Sbjct: 537 tccaaccgtcgcaacttacaggggaacagaggaatgctacaaggttgttcaagaagctca 596
Query: 545 agtcccacatcgaaaccacaattgcaattggaaatcc 581
||||| |||||||||||||||| ||||||||||||||
Sbjct: 597 agtcctacatcgaaaccacaatcgcaattggaaatcc 633
>gnl|LJGI|TC74566 similar to UniRef100_A7R3T5 Cluster: Chromosome undetermined
scaffold_567, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_567,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (8%)
Length = 511
Score = 137 bits (69), Expect = 2e-31
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 245 aactctatgcaatcttggaggatgtagctgacagaattgaaatgcataataacattggcg 304
||||||||||||||||||| | ||| |||||||||||||||||||| | ||||||||||
Sbjct: 402 aactctatgcaatcttggaagctgttgctgacagaattgaaatgcaccaaaacattggcg 461
Query: 305 agcaacgtgacaattggaacaccctccttttgaactccatcaacatgat 353
|||| |||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 462 agcagcgtgacaactggaacactcttcttttgaactccatcaacatgat 510
>gnl|LJGI|GO015790 similar to UniRef100_A7R3T6 Cluster: Chromosome undetermined
scaffold_567, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_567, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(26%)
Length = 744
Score = 111 bits (56), Expect = 1e-23
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1120 gaagagaaagatttggaaagaagagaaaatggggaactctttgaaatgaatatggctttg 1179
||||||||||| || || | |||||||||||||| || ||||||||||| |||||||||
Sbjct: 354 gaagagaaagacttagagaagagagaaaatggggagctatttgaaatgaagatggctttg 295
Query: 1180 caattgggaagaagtgtatcacagctgagggaacttgcctcaaaatcagcttcctatcgt 1239
|| ||||||||||||| || ||||| || ||||||||||||||||| ||||||| ||||
Sbjct: 294 cagctgggaagaagtgtgtctcagctaagagaacttgcctcaaaatctgcttcctgtcgt 235
>gnl|LJGI|TC68684 weakly similar to UniRef100_A7P0M5 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (7%)
Length = 1097
Score = 73.8 bits (37), Expect = 2e-12
Identities = 91/108 (84%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 832 gtggtgaagagaaaggacattgaagattatgacaggcttggaaacattgccttgaagatt 891
|||||||||||||| |||||||| ||||||| || ||||||||||| | ||||||||
Sbjct: 842 gtggtgaagagaaaagacattgaggattatg--agacttggaaacatggtgttgaagatc 899
Query: 892 cacaagaatttggccattgctgggcctttactcacaggcattgctgca 939
||| || || || ||||| ||||||||||||||| || |||||||||
Sbjct: 900 aacatgacttcggacattgttgggcctttactcactggaattgctgca 947
>gnl|LJGI|BP071456 similar to UniRef100_A7R3T5 Cluster: Chromosome undetermined
scaffold_567, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_567, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(15%)
Length = 399
Score = 71.9 bits (36), Expect = 9e-12
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1018 aacacttttgagcatggagggcaagtaggcatggtgtttgaaatgtacagaa 1069
||||||||||||||||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 381 aacacttttgagcatggtgggcaagtagggatggtatctgaaatgtacagaa 330
Score = 52.0 bits (26), Expect = 9e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 1140 aagagaaaatggggaactctttgaaatgaatatggctttgcaattgggaagaag 1193
||||||||||||||| | ||||||||||| | |||||| |||||||||||||
Sbjct: 262 aagagaaaatggggagttgtttgaaatgaagctagctttgaaattgggaagaag 209